Wall clock time and date at job start Tue Mar 31 2020 07:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86807 * 119.99797 * 2 1 4 4 H 1.48501 * 109.47095 * 239.99975 * 3 2 1 5 5 H 1.48505 * 109.46679 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47074 * 119.99630 * 3 2 1 7 7 C 1.39050 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99679 * 192.55241 * 7 2 1 9 9 N 1.36868 * 119.99875 * 12.54487 * 7 2 1 10 10 C 1.46498 * 119.99981 * 11.36417 * 9 7 2 11 11 C 1.50701 * 109.47299 * 272.63150 * 10 9 7 12 12 O 1.20832 * 120.00044 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00538 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99951 * 191.36364 * 9 7 2 15 15 O 1.21593 * 119.99972 * 4.50580 * 14 9 7 16 16 C 1.47726 * 120.00136 * 184.50286 * 14 9 7 17 17 C 1.39648 * 120.13324 * 308.66155 * 16 14 9 18 18 C 1.38155 * 119.84497 * 180.02562 * 17 16 14 19 19 F 1.35106 * 119.94253 * 180.02562 * 18 17 16 20 20 C 1.38585 * 120.11681 * 359.97438 * 18 17 16 21 21 C 1.38429 * 120.26764 * 0.02562 * 20 18 17 22 22 Cl 1.73601 * 119.92418 * 180.02562 * 21 20 18 23 23 C 1.38086 * 120.15337 * 359.97438 * 21 20 18 24 24 H 0.97004 * 120.00500 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47368 * 32.63185 * 10 9 7 26 26 H 1.08996 * 109.47236 * 152.63550 * 10 9 7 27 27 H 0.96693 * 117.00040 * 180.02562 * 13 11 10 28 28 H 1.07993 * 120.07245 * 0.04156 * 17 16 14 29 29 H 1.08000 * 119.87200 * 180.02562 * 20 18 17 30 30 H 1.08005 * 120.06346 * 179.72254 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1013 1.6965 -1.2125 5 1 1.2824 2.7465 -0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0695 -1.2153 0.2027 9 7 1.3491 -2.3752 -0.2585 10 6 -0.0213 -2.3454 -0.7754 11 6 -0.9912 -2.2801 0.3762 12 8 -0.5799 -2.2601 1.5121 13 8 -2.3121 -2.2432 0.1400 14 6 1.9603 -3.5559 -0.0370 15 8 3.0659 -3.5829 0.4683 16 6 1.2869 -4.8173 -0.4082 17 6 -0.0188 -5.0671 0.0195 18 6 -0.6427 -6.2490 -0.3307 19 9 -1.9061 -6.4925 0.0816 20 6 0.0247 -7.1848 -1.1049 21 6 1.3190 -6.9420 -1.5315 22 17 2.1464 -8.1201 -2.5017 23 6 1.9532 -5.7645 -1.1880 24 1 -0.4851 0.8400 -0.0004 25 1 -0.1513 -1.4687 -1.4100 26 1 -0.2095 -3.2470 -1.3582 27 1 -2.8948 -2.2014 0.9105 28 1 -0.5397 -4.3380 0.6223 29 1 -0.4670 -8.1072 -1.3767 30 1 2.9647 -5.5785 -1.5179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:36 Heat of formation + Delta-G solvation = -147.629849 kcal Electronic energy + Delta-G solvation = -22582.194258 eV Core-core repulsion = 18704.162581 eV Total energy + Delta-G solvation = -3878.031677 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.035 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.09343 -41.76342 -40.42733 -39.35003 -37.53462 -37.15100 -36.41434 -33.98938 -32.26508 -31.66833 -29.62458 -27.33868 -24.86752 -23.95872 -22.91344 -21.47164 -19.26664 -19.02304 -18.65639 -18.15556 -17.67760 -17.49729 -17.19700 -16.79806 -16.46784 -16.36192 -15.98515 -15.68784 -15.14535 -14.72722 -14.48155 -14.29190 -13.75496 -13.64723 -13.39521 -13.21280 -12.85113 -12.74931 -12.60025 -12.30194 -12.16203 -12.15500 -12.12985 -11.60378 -11.05700 -10.79121 -10.12336 -10.09220 -9.92349 -8.51931 -6.06438 -0.41206 -0.20995 0.82214 1.32176 1.41106 1.52295 1.59294 1.76656 2.14884 2.22309 2.45957 2.74493 2.93205 3.16914 3.45561 3.63986 3.80545 3.88201 4.10627 4.16932 4.51219 4.69722 4.74535 4.81682 4.87862 5.00901 5.35078 5.42757 5.83264 5.91199 6.24487 6.94290 7.13926 7.38063 7.70941 8.51680 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.005563 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.117199 B = 5031.614673 C = 6140.613429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.001 3.999 3 Si 1.004 2.996 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.334 4.334 8 H 0.089 0.911 9 N -0.424 5.424 10 C 0.140 3.860 11 C 0.508 3.492 12 O -0.554 6.554 13 O -0.517 6.517 14 C 0.475 3.525 15 O -0.612 6.612 16 C -0.071 4.071 17 C -0.144 4.144 18 C 0.118 3.882 19 F -0.127 7.127 20 C -0.117 4.117 21 C -0.003 4.003 22 Cl -0.033 7.033 23 C -0.079 4.079 24 H 0.281 0.719 25 H 0.131 0.869 26 H 0.105 0.895 27 H 0.414 0.586 28 H 0.123 0.877 29 H 0.185 0.815 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -10.756 -7.168 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.200 4.200 3 Si 0.827 3.173 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.461 4.461 8 H 0.107 0.893 9 N -0.141 5.141 10 C 0.015 3.985 11 C 0.351 3.649 12 O -0.445 6.445 13 O -0.329 6.329 14 C 0.265 3.735 15 O -0.499 6.499 16 C -0.075 4.075 17 C -0.164 4.164 18 C 0.098 3.902 19 F -0.105 7.105 20 C -0.136 4.136 21 C -0.030 4.030 22 Cl -0.004 7.004 23 C -0.099 4.099 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.123 0.877 27 H 0.273 0.727 28 H 0.141 0.859 29 H 0.202 0.798 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.776 -10.701 -7.043 13.672 hybrid contribution -0.197 1.091 1.113 1.571 sum -4.973 -9.610 -5.931 12.339 Atomic orbital electron populations 1.69556 1.06819 1.29196 1.47986 1.26079 0.96470 1.02620 0.94795 0.84827 0.77732 0.75726 0.79054 1.18436 1.19391 1.20664 1.19795 0.94440 0.83485 1.48348 0.89336 1.43509 1.11327 1.05101 1.54117 1.21043 0.79494 1.05286 0.92721 1.23401 0.81740 0.69044 0.90686 1.90621 1.79433 1.48307 1.26094 1.84445 1.18136 1.86065 1.44211 1.18337 0.87261 0.83689 0.84216 1.90610 1.23052 1.87020 1.49243 1.19606 0.93552 0.95329 0.99009 1.21506 0.94822 0.98093 1.01983 1.17138 0.80504 0.94039 0.98521 1.91543 1.36185 1.94257 1.88543 1.21282 0.93337 1.00967 0.98028 1.20384 0.93250 0.91418 0.97912 1.98392 1.77810 1.55669 1.68480 1.21145 1.00854 0.91362 0.96544 0.90858 0.85097 0.87701 0.72691 0.85903 0.79788 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.49 8.21 21.68 0.18 -44.31 16 2 C 0.00 0.06 5.18 84.96 0.44 0.50 16 3 Si 1.00 40.91 29.57 68.60 2.03 42.94 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.33 -18.35 9.43 84.10 0.79 -17.56 16 8 H 0.09 5.17 7.28 -2.91 -0.02 5.15 16 9 N -0.42 -21.58 2.12 -643.01 -1.36 -22.94 16 10 C 0.14 6.06 4.80 85.63 0.41 6.47 16 11 C 0.51 22.18 3.82 71.24 0.27 22.45 16 12 O -0.55 -28.84 16.20 21.94 0.36 -28.49 16 13 O -0.52 -17.74 13.42 -51.41 -0.69 -18.43 16 14 C 0.47 23.71 7.16 86.75 0.62 24.33 16 15 O -0.61 -35.06 16.68 -4.01 -0.07 -35.13 16 16 C -0.07 -2.75 4.81 -20.10 -0.10 -2.85 16 17 C -0.14 -5.06 7.64 22.59 0.17 -4.89 16 18 C 0.12 3.26 7.29 22.33 0.16 3.42 16 19 F -0.13 -3.39 17.26 44.97 0.78 -2.62 16 20 C -0.12 -2.60 9.80 22.40 0.22 -2.38 16 21 C 0.00 -0.06 6.31 22.28 0.14 0.08 16 22 Cl -0.03 -0.66 28.95 -2.72 -0.08 -0.74 16 23 C -0.08 -2.50 9.52 22.57 0.21 -2.28 16 24 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 25 H 0.13 5.84 6.28 -2.38 -0.01 5.82 16 26 H 0.11 3.84 5.79 -2.39 -0.01 3.82 16 27 H 0.41 10.68 9.10 -74.06 -0.67 10.00 16 28 H 0.12 4.85 4.40 -2.91 -0.01 4.84 16 29 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -68.33 286.76 5.06 -63.27 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.57 Total: 19.14 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 3.35 Total: 27.29 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -1.18 Total: -67.25 kcal Atomic # 8 Polarization: -81.65 SS G_CDS: -0.40 Total: -82.05 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -68.33 5.06 -63.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.356 kcal (2) G-P(sol) polarization free energy of solvation -68.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds