Wall clock time and date at job start Tue Mar 31 2020 07:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46502 * 109.47009 * 2 1 4 4 N 1.28432 * 125.18487 * 275.16816 * 3 2 1 5 5 C 1.30847 * 110.96742 * 180.26100 * 4 3 2 6 6 C 1.39776 * 107.87251 * 359.75514 * 5 4 3 7 7 Br 1.89095 * 127.33536 * 179.97438 * 6 5 4 8 8 C 1.36709 * 125.18584 * 95.01103 * 3 2 1 9 9 C 1.47065 * 126.90077 * 0.02562 * 8 3 2 10 10 O 1.21640 * 119.99997 * 269.39306 * 9 8 3 11 11 N 1.34774 * 119.99541 * 89.39897 * 9 8 3 12 12 C 1.46504 * 119.99491 * 174.92327 * 11 9 8 13 13 C 1.50704 * 109.47067 * 180.27276 * 12 11 9 14 14 H 1.08003 * 119.99552 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99943 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99773 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99698 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47482 * 90.00270 * 17 15 13 19 19 H 1.48509 * 109.47051 * 210.00227 * 17 15 13 20 20 H 1.48497 * 109.47493 * 329.99677 * 17 15 13 21 21 H 1.08992 * 109.46559 * 59.99919 * 1 2 3 22 22 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46919 * 300.00054 * 1 2 3 24 24 H 1.08995 * 109.46919 * 239.99946 * 2 1 3 25 25 H 1.09001 * 109.46878 * 119.99569 * 2 1 3 26 26 H 1.07998 * 126.06513 * 179.78861 * 5 4 3 27 27 H 0.96999 * 120.00275 * 355.19668 * 11 9 8 28 28 H 1.08998 * 109.47059 * 300.26986 * 12 11 9 29 29 H 1.09002 * 109.47117 * 60.27753 * 12 11 9 30 30 H 0.97006 * 119.99448 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1759 2.1105 -1.0454 5 6 2.6312 3.2948 -0.7259 6 6 2.7778 3.3375 0.6635 7 35 3.3975 4.7874 1.7073 8 6 2.3730 2.0914 1.1130 9 6 2.3380 1.6240 2.5070 10 8 1.3379 1.7900 3.1792 11 7 3.4141 1.0119 3.0396 12 6 3.4211 0.6461 4.4583 13 6 4.7321 -0.0136 4.8004 14 1 5.4846 -0.1475 4.0373 15 6 4.9709 -0.4463 6.0876 16 7 4.0543 -0.2837 7.0166 17 14 6.5962 -1.2635 6.5118 18 1 7.5719 -0.2305 6.9432 19 1 6.3878 -2.2380 7.6128 20 1 7.1210 -1.9717 5.3167 21 1 -0.3632 0.5138 -0.8899 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.8537 4.0973 -1.4136 27 1 4.1854 0.8171 2.4847 28 1 3.2963 1.5428 5.0653 29 1 2.6030 -0.0455 4.6592 30 1 4.2222 -0.5885 7.9221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123763145.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:12 Heat of formation + Delta-G solvation = 35.565950 kcal Electronic energy + Delta-G solvation = -16647.383247 eV Core-core repulsion = 13718.620906 eV Total energy + Delta-G solvation = -2928.762341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.017 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.56639 -38.71305 -34.77323 -34.37977 -32.52091 -31.87603 -30.30736 -29.13866 -27.33228 -24.26994 -23.51848 -21.74455 -21.24700 -19.64224 -18.14606 -16.45299 -16.09500 -15.64108 -15.16038 -14.89729 -14.44941 -14.16040 -13.94602 -13.34512 -12.96497 -12.83146 -12.25722 -12.07786 -11.89113 -11.51321 -11.14276 -11.10368 -11.04054 -10.94411 -10.42087 -9.99416 -9.61265 -9.48190 -9.23382 -8.84315 -8.65472 -8.10302 -6.23875 -4.31428 1.55543 1.62041 2.37617 2.46735 3.04653 3.20794 3.27212 3.29049 3.75312 4.28652 4.39287 4.75555 4.88412 5.02160 5.04273 5.12792 5.26462 5.39872 5.47839 5.62995 5.94269 6.18415 6.62164 7.11991 7.16239 7.37819 7.53913 7.85643 7.92214 8.36876 8.58298 8.82548 9.34987 10.86179 Molecular weight = 301.02amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.005480 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.838344 B = 5107.889453 C = 6212.464891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.265 5.265 4 N -0.283 5.283 5 C 0.035 3.965 6 C -0.179 4.179 7 Br -0.001 7.001 8 C 0.028 3.972 9 C 0.568 3.432 10 O -0.526 6.526 11 N -0.689 5.689 12 C 0.249 3.751 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.192 0.808 27 H 0.394 0.606 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 5.242 -15.277 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.053 5.053 4 N -0.112 5.112 5 C -0.144 4.144 6 C -0.270 4.270 7 Br 0.082 6.918 8 C -0.105 4.105 9 C 0.348 3.652 10 O -0.402 6.402 11 N -0.337 5.337 12 C 0.130 3.870 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.138 4.138 16 N -0.521 5.521 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.197 1.197 21 H 0.086 0.914 22 H 0.102 0.898 23 H 0.089 0.911 24 H 0.124 0.876 25 H 0.122 0.878 26 H 0.208 0.792 27 H 0.227 0.773 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.193 5.000 -15.075 16.200 hybrid contribution 1.330 -0.263 0.474 1.436 sum -1.863 4.737 -14.601 15.463 Atomic orbital electron populations 1.22170 0.93053 1.03776 1.03843 1.22128 0.96588 0.76207 1.05641 1.45900 1.45140 1.12266 1.01952 1.73153 1.19910 1.04451 1.13710 1.23454 1.02809 0.95489 0.92691 1.22306 1.14906 0.94617 0.95163 1.96670 1.87063 1.38847 1.69207 1.21950 1.05029 0.92990 0.90510 1.16960 0.84923 0.79774 0.83534 1.90837 1.32072 1.56234 1.61093 1.46517 1.16329 1.56286 1.14585 1.19265 0.97921 0.96346 0.73514 1.21173 1.00727 1.40696 0.95784 0.91770 1.24928 0.97369 0.95593 0.95929 1.69968 1.33718 1.45707 1.02707 0.86402 0.83003 0.79207 0.78247 1.20341 1.20951 1.19728 0.91410 0.89819 0.91053 0.87599 0.87757 0.79152 0.77262 0.94914 0.94982 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 37.16 0.38 -1.42 16 2 C 0.11 1.31 6.91 -4.04 -0.03 1.28 16 3 N -0.26 -3.87 3.35 -57.11 -0.19 -4.06 16 4 N -0.28 -4.02 11.90 30.61 0.36 -3.65 16 5 C 0.04 0.47 12.03 -17.40 -0.21 0.26 16 6 C -0.18 -2.82 6.76 -38.90 -0.26 -3.09 16 7 Br 0.00 -0.02 33.98 -68.01 -2.31 -2.33 16 8 C 0.03 0.48 6.71 -82.01 -0.55 -0.07 16 9 C 0.57 11.49 6.86 -12.68 -0.09 11.41 16 10 O -0.53 -12.54 17.12 5.24 0.09 -12.45 16 11 N -0.69 -14.24 5.54 -62.68 -0.35 -14.59 16 12 C 0.25 6.33 5.43 -5.19 -0.03 6.30 16 13 C -0.55 -14.29 9.28 -34.44 -0.32 -14.61 16 14 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.88 -25.28 13.29 55.43 0.74 -24.54 16 17 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.10 1.23 7.65 -51.93 -0.40 0.84 16 26 H 0.19 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.39 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 294.49 15.07 4.44 4.44 Total: -1.00 -31.02 294.49 -6.67 -37.70 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.23 Total: 2.40 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.20 Total: 1.75 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.56 Total: -46.84 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.31 Total: -2.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.02 -6.67 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123763145.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.261 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds