Wall clock time and date at job start Tue Mar 31 2020 08:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47268 * 240.00326 * 3 2 1 5 5 H 1.48503 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47269 * 120.00225 * 3 2 1 7 7 C 1.37881 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.16850 * 180.02562 * 9 7 2 11 11 N 1.47483 * 87.93179 * 220.14197 * 10 9 7 12 12 C 1.46902 * 110.99990 * 138.70712 * 11 10 9 13 13 C 1.50698 * 109.47194 * 170.00083 * 12 11 10 14 14 C 1.38258 * 119.94012 * 89.99434 * 13 12 11 15 15 C 1.38267 * 120.06482 * 180.02562 * 14 13 12 16 16 Cl 1.73598 * 120.03174 * 179.97438 * 15 14 13 17 17 C 1.38789 * 119.93352 * 359.97438 * 15 14 13 18 18 O 1.35950 * 120.05988 * 180.02562 * 17 15 14 19 19 C 1.38791 * 119.87517 * 0.28298 * 17 15 14 20 20 Cl 1.73603 * 120.03204 * 179.71877 * 19 17 15 21 21 C 1.38261 * 119.93297 * 269.97624 * 13 12 11 22 22 C 1.47477 * 87.83847 * 27.00906 * 11 10 9 23 23 H 0.97001 * 120.00294 * 359.97438 * 1 2 3 24 24 H 1.08995 * 113.25985 * 312.95110 * 9 7 2 25 25 H 1.09002 * 113.47865 * 105.37507 * 10 9 7 26 26 H 1.09003 * 113.47731 * 334.90467 * 10 9 7 27 27 H 1.08997 * 109.47236 * 49.99538 * 12 11 10 28 28 H 1.09005 * 109.46507 * 289.99509 * 12 11 10 29 29 H 1.07999 * 119.96558 * 359.97438 * 14 13 12 30 30 H 0.96700 * 114.00052 * 90.00499 * 18 17 15 31 31 H 1.08001 * 119.97092 * 0.02562 * 21 13 12 32 32 H 1.09005 * 113.47564 * 87.75271 * 22 11 10 33 33 H 1.08990 * 113.47751 * 218.22635 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1496 -3.7438 -0.0005 11 7 1.2050 -4.3601 -0.9507 12 6 1.9206 -5.0902 -2.0057 13 6 0.9384 -5.9037 -2.8084 14 6 0.3322 -5.3517 -3.9217 15 6 -0.5697 -6.0957 -4.6598 16 17 -1.3308 -5.4015 -6.0571 17 6 -0.8660 -7.3980 -4.2824 18 8 -1.7520 -8.1320 -5.0065 19 6 -0.2600 -7.9477 -3.1613 20 17 -0.6331 -9.5739 -2.6813 21 6 0.6455 -7.2010 -2.4304 22 6 0.8517 -2.9993 -1.3959 23 1 -0.4851 0.8400 0.0004 24 1 0.4452 -2.5308 0.7327 25 1 2.1889 -4.2510 0.9635 26 1 3.1379 -3.5658 -0.4246 27 1 2.6575 -5.7535 -1.5528 28 1 2.4251 -4.3798 -2.6608 29 1 0.5629 -4.3381 -4.2146 30 1 -1.3484 -8.6414 -5.7226 31 1 1.1203 -7.6297 -1.5602 32 1 1.4937 -2.6226 -2.1923 33 1 -0.2089 -2.8756 -1.6145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140828932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:12 Heat of formation + Delta-G solvation = -15.888239 kcal Electronic energy + Delta-G solvation = -19288.779044 eV Core-core repulsion = 15980.629581 eV Total energy + Delta-G solvation = -3308.149462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29696 -40.40413 -38.00409 -37.79777 -37.35765 -34.77521 -32.83110 -31.80587 -29.75280 -27.22035 -26.51526 -24.51891 -24.11485 -22.36721 -20.45793 -19.70666 -18.68603 -17.61554 -17.48027 -16.75121 -16.67428 -16.25211 -15.76642 -15.57517 -15.32782 -14.82966 -14.19272 -13.91663 -13.72715 -13.40176 -13.38544 -13.25286 -13.01366 -12.79561 -12.46008 -12.31066 -12.16359 -12.08667 -11.92768 -11.68705 -11.56030 -11.16063 -10.84622 -10.48055 -9.85116 -9.77298 -9.58162 -8.13147 -6.24627 -0.16336 -0.13413 0.72863 1.19860 1.45129 1.45898 1.53747 2.20386 2.44340 2.88858 3.16494 3.36155 3.63153 3.86660 3.95725 4.05797 4.26524 4.30034 4.45672 4.52205 4.63184 4.73611 4.81167 4.83948 4.89443 5.00676 5.22544 5.27653 5.36707 5.53788 5.64978 5.87220 6.30621 6.38138 6.56841 6.85564 7.44361 8.96252 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.003583 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.638026 B = 7811.882745 C = 8796.136698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.017 3.983 10 C 0.013 3.987 11 N -0.479 5.479 12 C 0.056 3.944 13 C -0.053 4.053 14 C -0.089 4.089 15 C -0.060 4.060 16 Cl -0.048 7.048 17 C 0.122 3.878 18 O -0.482 6.482 19 C -0.058 4.058 20 Cl -0.042 7.042 21 C -0.073 4.073 22 C 0.019 3.981 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.411 0.589 31 H 0.157 0.843 32 H 0.057 0.943 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -17.236 -10.798 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.081 0.919 9 C -0.002 4.002 10 C -0.116 4.116 11 N -0.201 5.201 12 C -0.072 4.072 13 C -0.054 4.054 14 C -0.109 4.109 15 C -0.088 4.088 16 Cl -0.019 7.019 17 C 0.075 3.925 18 O -0.295 6.295 19 C -0.086 4.086 20 Cl -0.013 7.013 21 C -0.092 4.092 22 C -0.110 4.110 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.271 0.729 31 H 0.175 0.825 32 H 0.075 0.925 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.167 -17.482 -10.304 20.326 hybrid contribution 0.796 1.320 -0.763 1.720 sum 1.963 -16.162 -11.067 19.686 Atomic orbital electron populations 1.70093 1.07598 1.27576 1.50873 1.25815 0.95512 1.02668 0.94389 0.85657 0.78360 0.78849 0.79079 1.19283 1.21405 1.19371 1.21364 0.93111 0.91334 1.50970 0.91923 1.20050 0.94646 0.92311 0.93188 1.23851 0.95531 0.95270 0.96927 1.68846 1.27767 1.12803 1.10683 1.21694 0.94113 0.97624 0.93741 1.19672 0.97972 0.93670 0.94127 1.21113 0.95064 1.00197 0.94515 1.21188 0.99717 0.94208 0.93656 1.98375 1.80545 1.83803 1.39153 1.17760 0.92277 0.89549 0.92938 1.84844 1.32881 1.62814 1.48936 1.21183 1.00456 0.88897 0.98039 1.98375 1.93718 1.18219 1.90951 1.21111 0.95959 0.93017 0.99160 1.23847 0.98880 0.88320 0.99985 0.92955 0.95506 0.90520 0.91220 0.87789 0.92162 0.84372 0.72906 0.82535 0.92528 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 13.26 21.45 0.28 -53.30 16 2 C 0.02 0.84 5.46 84.66 0.46 1.31 16 3 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.53 -27.95 8.83 25.60 0.23 -27.72 16 8 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.02 0.84 3.76 -11.19 -0.04 0.80 16 10 C 0.01 0.48 7.25 83.58 0.61 1.08 16 11 N -0.48 -17.42 6.32 -932.40 -5.89 -23.31 16 12 C 0.06 1.55 4.94 85.56 0.42 1.98 16 13 C -0.05 -1.38 5.47 -19.86 -0.11 -1.49 16 14 C -0.09 -2.37 9.48 22.28 0.21 -2.16 16 15 C -0.06 -1.50 6.33 22.41 0.14 -1.36 16 16 Cl -0.05 -1.13 28.50 -2.72 -0.08 -1.21 16 17 C 0.12 2.82 6.69 22.53 0.15 2.97 16 18 O -0.48 -9.47 12.42 -92.99 -1.16 -10.62 16 19 C -0.06 -1.33 6.33 22.41 0.14 -1.18 16 20 Cl -0.04 -0.84 28.50 -2.72 -0.08 -0.92 16 21 C -0.07 -1.70 9.48 22.28 0.21 -1.49 16 22 C 0.02 0.83 7.28 83.58 0.61 1.44 16 23 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 24 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 25 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 26 H 0.07 2.46 7.87 -2.39 -0.02 2.44 16 27 H 0.10 2.37 8.02 -2.39 -0.02 2.35 16 28 H 0.06 1.65 7.24 -2.38 -0.02 1.64 16 29 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 30 H 0.41 4.23 9.06 -74.06 -0.67 3.56 16 31 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.06 2.42 7.38 -2.38 -0.02 2.40 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.87 317.37 -1.38 -62.25 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.48 Total: 8.69 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 3.03 Total: -25.83 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -5.60 Total: -76.61 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.16 Total: -10.62 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.16 Total: -2.13 kcal Total: -60.87 -1.38 -62.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140828932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.361 kcal (2) G-P(sol) polarization free energy of solvation -60.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds