Wall clock time and date at job start Tue Mar 31 2020 08:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48499 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99947 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99671 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00123 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21533 * 119.99911 * 359.97438 * 14 13 12 16 16 C 1.48003 * 119.99586 * 180.27108 * 14 13 12 17 17 N 1.32832 * 119.74932 * 359.45496 * 16 14 13 18 18 C 1.31455 * 121.69801 * 179.70884 * 17 16 14 19 19 C 1.38630 * 120.98912 * 0.56360 * 18 17 16 20 20 C 1.38573 * 119.38460 * 359.72126 * 19 18 17 21 21 Cl 1.73600 * 120.78269 * 179.97438 * 20 19 18 22 22 C 1.39121 * 118.44159 * 0.02562 * 20 19 18 23 23 F 1.35098 * 120.51404 * 180.02562 * 22 20 19 24 24 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 27 27 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 28 28 H 0.97001 * 120.00074 * 359.97438 * 13 12 10 29 29 H 1.07997 * 119.50500 * 180.28828 * 18 17 16 30 30 H 1.08000 * 120.30856 * 179.70219 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0004 14 6 1.7469 -7.2471 -0.0013 15 8 0.5520 -7.4692 -0.0022 16 6 2.7088 -8.3719 0.0056 17 7 4.0136 -8.1233 0.0015 18 6 4.9015 -9.0927 0.0130 19 6 4.5072 -10.4217 0.0181 20 6 3.1562 -10.7301 0.0170 21 17 2.6220 -12.3819 0.0226 22 6 2.2380 -9.6850 0.0100 23 9 0.9109 -9.9379 0.0092 24 1 -0.4851 0.8399 -0.0004 25 1 0.3535 -2.3907 -0.0005 26 1 0.6177 -4.9205 -0.8913 27 1 0.6171 -4.9209 0.8886 28 1 3.1497 -5.7991 0.0000 29 1 5.9539 -8.8501 0.0140 30 1 5.2460 -11.2094 0.0227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322790319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:02 Heat of formation + Delta-G solvation = -82.128186 kcal Electronic energy + Delta-G solvation = -20842.754353 eV Core-core repulsion = 16999.855792 eV Total energy + Delta-G solvation = -3842.898561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.042 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.27058 -40.81968 -39.26528 -38.08432 -37.29392 -34.55694 -33.78385 -32.74681 -31.60782 -31.36227 -27.97841 -25.36724 -24.35248 -23.84089 -20.91905 -19.68665 -18.62882 -18.12898 -18.01245 -17.64371 -16.46168 -16.27371 -15.67511 -15.26546 -15.23662 -14.76994 -14.54889 -14.17504 -14.12146 -13.84186 -13.65873 -13.52510 -13.16871 -12.72906 -12.22268 -11.98288 -11.66038 -11.63891 -11.14628 -10.59956 -10.40786 -10.32632 -10.06938 -9.95586 -9.65169 -9.51053 -8.88722 -8.64469 -8.10651 -6.51876 -3.93840 -0.00673 0.31921 1.25664 2.44438 2.90138 3.10196 3.22727 3.29466 3.34851 3.46686 3.72914 3.75451 4.04468 4.09660 4.20071 4.73936 4.83599 4.88812 5.07654 5.15124 5.16378 5.80436 5.89208 5.90295 6.03823 6.53329 7.09400 7.46163 7.67796 7.91081 8.22986 8.44585 9.04291 9.38349 9.86159 10.65091 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.042836 B = 0.002688 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.492636 B =10415.107734 C =11053.431261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.593 6.593 12 C 0.106 3.894 13 N -0.679 5.679 14 C 0.564 3.436 15 O -0.525 6.525 16 C 0.070 3.930 17 N -0.421 5.421 18 C 0.105 3.895 19 C -0.116 4.116 20 C -0.045 4.045 21 Cl -0.025 7.025 22 C 0.118 3.882 23 F -0.091 7.091 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.423 0.577 29 H 0.183 0.817 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -21.541 0.047 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.479 6.479 12 C -0.021 4.021 13 N -0.333 5.333 14 C 0.346 3.654 15 O -0.402 6.402 16 C -0.069 4.069 17 N -0.131 5.131 18 C -0.055 4.055 19 C -0.137 4.137 20 C -0.080 4.080 21 Cl 0.004 6.996 22 C 0.094 3.906 23 F -0.069 7.069 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.263 0.737 29 H 0.200 0.800 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.913 -20.733 0.038 21.855 hybrid contribution -0.312 -0.217 0.005 0.380 sum 6.601 -20.950 0.043 21.966 Atomic orbital electron populations 1.69619 1.06019 1.28449 1.49396 1.25331 0.95668 0.99951 0.96802 0.85754 0.79699 0.80799 0.77821 1.19102 1.20613 1.20621 1.19784 0.93510 0.81929 1.48098 0.87566 1.41791 1.09493 1.04431 1.62652 1.19667 0.88309 0.84888 0.85794 1.90517 1.13585 1.86710 1.57116 1.21078 0.91762 0.85592 1.03700 1.45509 1.12671 1.03750 1.71377 1.17464 0.86858 0.82456 0.78599 1.90866 1.14715 1.84389 1.50207 1.21502 0.91708 0.91468 1.02270 1.67747 1.00233 1.36978 1.08190 1.23027 1.00344 0.86934 0.95220 1.22353 0.93597 0.99578 0.98169 1.21449 0.94161 0.87075 1.05343 1.98428 1.90314 1.14325 1.96519 1.18394 0.79342 0.92240 1.00625 1.91671 1.28513 1.94318 1.92379 0.91626 0.77013 0.89331 0.89336 0.73719 0.79994 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 13.05 55.50 0.72 -23.08 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.53 5.29 -10.97 -0.06 -13.59 16 10 C 0.43 9.80 7.85 -10.99 -0.09 9.71 16 11 O -0.59 -15.22 15.24 5.55 0.08 -15.13 16 12 C 0.11 1.96 6.15 -5.19 -0.03 1.93 16 13 N -0.68 -11.89 5.52 -62.38 -0.34 -12.23 16 14 C 0.56 9.51 7.81 -12.26 -0.10 9.42 16 15 O -0.53 -10.06 15.32 5.34 0.08 -9.98 16 16 C 0.07 0.98 6.75 -82.96 -0.56 0.42 16 17 N -0.42 -5.07 9.54 -9.78 -0.09 -5.16 16 18 C 0.11 0.82 11.18 -17.57 -0.20 0.62 16 19 C -0.12 -0.78 9.93 -39.31 -0.39 -1.17 16 20 C -0.04 -0.42 6.37 -39.13 -0.25 -0.67 16 21 Cl -0.03 -0.21 28.75 -51.86 -1.49 -1.71 16 22 C 0.12 1.50 7.29 -38.78 -0.28 1.21 16 23 F -0.09 -1.33 15.20 2.25 0.03 -1.29 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 26 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.42 7.52 6.76 -40.82 -0.28 7.24 16 29 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.16 0.51 8.06 -52.49 -0.42 0.08 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -31.73 299.82 -5.50 -37.23 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -1.80 Total: 11.32 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -2.13 Total: 13.67 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.23 Total: -54.07 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.17 Total: -25.11 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.03 Total: -1.29 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.49 Total: -1.71 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.73 -5.50 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322790319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.894 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds