Wall clock time and date at job start Tue Mar 31 2020 08:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48499 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99947 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99671 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00123 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21533 * 119.99911 * 359.97438 * 14 13 12 16 16 C 1.48003 * 119.99586 * 180.27108 * 14 13 12 17 17 N 1.32832 * 119.74932 * 359.45496 * 16 14 13 18 18 C 1.31455 * 121.69801 * 179.70884 * 17 16 14 19 19 C 1.38630 * 120.98912 * 0.56360 * 18 17 16 20 20 C 1.38573 * 119.38460 * 359.72126 * 19 18 17 21 21 Cl 1.73600 * 120.78269 * 179.97438 * 20 19 18 22 22 C 1.39121 * 118.44159 * 0.02562 * 20 19 18 23 23 F 1.35098 * 120.51404 * 180.02562 * 22 20 19 24 24 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 27 27 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 28 28 H 0.97001 * 120.00074 * 359.97438 * 13 12 10 29 29 H 1.07997 * 119.50500 * 180.28828 * 18 17 16 30 30 H 1.08000 * 120.30856 * 179.70219 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0004 14 6 1.7469 -7.2471 -0.0013 15 8 0.5520 -7.4692 -0.0022 16 6 2.7088 -8.3719 0.0056 17 7 4.0136 -8.1233 0.0015 18 6 4.9015 -9.0927 0.0130 19 6 4.5072 -10.4217 0.0181 20 6 3.1562 -10.7301 0.0170 21 17 2.6220 -12.3819 0.0226 22 6 2.2380 -9.6850 0.0100 23 9 0.9109 -9.9379 0.0092 24 1 -0.4851 0.8399 -0.0004 25 1 0.3535 -2.3907 -0.0005 26 1 0.6177 -4.9205 -0.8913 27 1 0.6171 -4.9209 0.8886 28 1 3.1497 -5.7991 0.0000 29 1 5.9539 -8.8501 0.0140 30 1 5.2460 -11.2094 0.0227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322790319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:02 Heat of formation + Delta-G solvation = -106.255750 kcal Electronic energy + Delta-G solvation = -20843.800602 eV Core-core repulsion = 16999.855792 eV Total energy + Delta-G solvation = -3843.944810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.042 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.25773 -41.77672 -40.63857 -39.76550 -38.00821 -36.30119 -35.45081 -33.60058 -33.34767 -32.44145 -29.50964 -26.84537 -25.67424 -24.70558 -22.14702 -21.42050 -20.18371 -19.63382 -18.96430 -18.63405 -17.59737 -17.47438 -17.03470 -16.78234 -16.68874 -16.30707 -15.74790 -15.58048 -15.42622 -15.02989 -14.72450 -14.69705 -14.10811 -13.92906 -13.71222 -13.55200 -13.41531 -12.91439 -12.44400 -12.37703 -12.10456 -11.66981 -11.58119 -10.97814 -10.78144 -10.57441 -10.46925 -10.22046 -10.09038 -8.51066 -6.01257 -0.85116 -0.43522 0.53513 1.35146 1.40700 1.43502 1.57338 1.73253 1.89346 2.29171 2.39567 2.56055 2.86386 3.08676 3.15995 3.24982 3.43880 3.91805 4.10233 4.19805 4.36058 4.37335 4.42480 4.52623 5.09774 5.18372 5.38900 5.91081 6.17654 6.45578 6.49172 6.88716 7.03521 7.43055 7.93524 8.66108 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.042836 B = 0.002688 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.492636 B =10415.107734 C =11053.431261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.621 6.621 12 C 0.118 3.882 13 N -0.683 5.683 14 C 0.564 3.436 15 O -0.556 6.556 16 C 0.044 3.956 17 N -0.445 5.445 18 C 0.115 3.885 19 C -0.082 4.082 20 C -0.048 4.048 21 Cl -0.016 7.016 22 C 0.100 3.900 23 F -0.111 7.111 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.422 0.578 29 H 0.226 0.774 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -22.743 0.057 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.509 6.509 12 C -0.010 4.010 13 N -0.336 5.336 14 C 0.349 3.651 15 O -0.435 6.435 16 C -0.094 4.094 17 N -0.156 5.156 18 C -0.046 4.046 19 C -0.102 4.102 20 C -0.084 4.084 21 Cl 0.013 6.987 22 C 0.076 3.924 23 F -0.089 7.089 24 H 0.089 0.911 25 H 0.234 0.766 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.261 0.739 29 H 0.242 0.758 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.802 -21.952 0.047 23.651 hybrid contribution -0.786 -0.004 0.002 0.786 sum 8.016 -21.956 0.050 23.373 Atomic orbital electron populations 1.69684 1.07028 1.29606 1.49347 1.26142 0.96539 1.02711 0.95774 0.84802 0.78171 0.76662 0.78293 1.19345 1.19638 1.19651 1.19781 0.92992 0.83451 1.50252 0.89502 1.41833 1.09612 1.04540 1.63384 1.20310 0.88111 0.85799 0.83782 1.90488 1.15086 1.87433 1.57858 1.20920 0.91528 0.83649 1.04879 1.45493 1.12257 1.03872 1.72024 1.17919 0.87181 0.82762 0.77274 1.90831 1.16223 1.84881 1.51553 1.20940 0.92118 0.90579 1.05770 1.67713 0.99775 1.38943 1.09161 1.23835 1.01373 0.86654 0.92780 1.22908 0.93003 1.00384 0.93910 1.21601 0.94689 0.86827 1.05235 1.98436 1.90496 1.13269 1.96459 1.18607 0.79060 0.92863 1.01901 1.91611 1.30077 1.94424 1.92792 0.91057 0.76644 0.88105 0.88110 0.73857 0.75780 0.77400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.34 -18.50 9.68 84.04 0.81 -17.69 16 8 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.56 -28.14 5.29 -306.99 -1.62 -29.76 16 10 C 0.43 20.24 7.85 87.66 0.69 20.93 16 11 O -0.62 -32.55 15.24 -3.05 -0.05 -32.59 16 12 C 0.12 4.41 6.15 85.63 0.53 4.94 16 13 N -0.68 -24.36 5.52 -469.56 -2.59 -26.95 16 14 C 0.56 19.51 7.81 86.83 0.68 20.19 16 15 O -0.56 -22.01 15.32 -3.82 -0.06 -22.07 16 16 C 0.04 1.21 6.75 41.89 0.28 1.49 16 17 N -0.44 -10.08 9.54 -184.84 -1.76 -11.85 16 18 C 0.11 1.36 11.18 84.84 0.95 2.31 16 19 C -0.08 -0.75 9.93 22.44 0.22 -0.52 16 20 C -0.05 -0.80 6.37 22.56 0.14 -0.66 16 21 Cl -0.02 -0.24 28.75 -2.72 -0.08 -0.32 16 22 C 0.10 2.50 7.29 22.79 0.17 2.67 16 23 F -0.11 -3.33 15.20 44.97 0.68 -2.64 16 24 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 26 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 27 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 28 H 0.42 15.27 6.76 -92.71 -0.63 14.65 16 29 H 0.23 0.67 8.06 -2.91 -0.02 0.64 16 30 H 0.21 -0.02 8.06 -2.91 -0.02 -0.05 16 Total: -1.00 -70.97 299.82 1.66 -69.31 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.12 Total: 28.06 kcal Atomic # 6 Polarization: 28.59 SS G_CDS: 4.94 Total: 33.53 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -5.69 Total: -117.03 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.11 Total: -54.66 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.68 Total: -2.64 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -70.97 1.66 -69.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322790319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.944 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds