Wall clock time and date at job start Tue Mar 31 2020 07:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00001 * 2 1 4 4 H 1.48500 * 109.47451 * 270.00109 * 3 2 1 5 5 H 1.48505 * 109.47080 * 29.99918 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99700 * 3 2 1 7 7 C 1.37881 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99572 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.52989 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00025 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99885 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99688 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47085 * 180.02562 * 14 13 11 16 16 C 1.34499 * 125.78117 * 90.00029 * 15 14 13 17 17 C 1.41397 * 106.85261 * 180.02562 * 16 15 14 18 18 C 1.34618 * 106.82857 * 0.26822 * 17 16 15 19 19 Br 1.89105 * 125.79490 * 179.70204 * 18 17 16 20 20 O 1.34301 * 108.40595 * 359.56808 * 18 17 16 21 21 H 0.96995 * 120.00050 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46665 * 60.00041 * 9 7 2 23 23 H 1.09003 * 109.46654 * 300.00246 * 9 7 2 24 24 H 1.09005 * 109.47428 * 60.00332 * 10 9 7 25 25 H 1.09007 * 109.47295 * 300.00111 * 10 9 7 26 26 H 0.96999 * 120.00360 * 0.02562 * 13 11 10 27 27 H 1.09005 * 109.46783 * 60.00360 * 14 13 11 28 28 H 1.08999 * 109.47432 * 300.00586 * 14 13 11 29 29 H 1.08002 * 126.57318 * 0.02562 * 16 15 14 30 30 H 1.08002 * 126.58158 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4918 -4.9672 0.0045 12 8 0.2790 -4.9673 0.0045 13 7 2.1658 -6.1344 0.0052 14 6 1.4333 -7.4031 0.0064 15 6 2.4125 -8.5485 0.0075 16 6 2.9235 -9.1452 1.0992 17 6 3.7931 -10.1619 0.6416 18 6 3.7660 -10.1215 -0.7037 19 35 4.7447 -11.2493 -1.8641 20 8 2.9236 -9.1463 -1.0818 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8720 -3.6051 -0.8873 26 1 3.1358 -6.1344 0.0048 27 1 0.8063 -7.4615 -0.8835 28 1 0.8068 -7.4602 0.8965 29 1 2.7104 -8.8957 2.1282 30 1 4.3720 -10.8375 1.2538 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347459970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:03 Heat of formation + Delta-G solvation = -48.928902 kcal Electronic energy + Delta-G solvation = -15728.646346 eV Core-core repulsion = 12763.927282 eV Total energy + Delta-G solvation = -2964.719063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.010 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.81594 -40.67372 -36.25668 -35.52340 -34.32844 -33.29985 -32.87221 -30.81511 -27.97990 -26.28398 -23.51657 -23.06345 -21.70738 -21.23601 -18.96795 -18.42029 -17.69111 -17.27674 -16.73816 -16.69075 -16.35211 -15.49154 -14.98426 -14.62415 -14.17293 -14.07903 -13.97854 -13.83092 -13.24543 -13.18159 -12.79919 -12.46933 -12.39795 -11.90295 -11.71489 -11.63094 -11.29877 -11.12763 -10.83250 -10.55806 -10.21294 -9.60615 -8.16888 -6.30589 -0.21541 0.21955 1.31661 1.43498 1.45868 1.56814 1.67223 2.00475 2.38057 2.49427 3.16317 3.52707 3.84796 4.01507 4.20991 4.37173 4.46121 4.56662 4.57797 4.68498 4.79399 5.08450 5.26271 5.30918 5.52079 5.65500 5.77798 5.87204 6.19135 6.49934 6.87968 7.26328 7.39612 8.95740 Molecular weight = 301.01amu Principal moments of inertia in cm(-1) A = 0.037565 B = 0.002421 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.187980 B =11564.783157 C =11958.087201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.582 6.582 13 N -0.719 5.719 14 C 0.201 3.799 15 C -0.018 4.018 16 C -0.173 4.173 17 C -0.149 4.149 18 C -0.045 4.045 19 Br 0.062 6.938 20 O -0.176 6.176 21 H 0.263 0.737 22 H -0.017 1.017 23 H -0.014 1.014 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.416 0.584 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.183 0.817 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.902 -27.368 -0.023 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.306 3.694 12 O -0.461 6.461 13 N -0.374 5.374 14 C 0.078 3.922 15 C -0.070 4.070 16 C -0.194 4.194 17 C -0.170 4.170 18 C -0.173 4.173 19 Br 0.146 6.854 20 O -0.074 6.074 21 H 0.071 0.929 22 H 0.001 0.999 23 H 0.004 0.996 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.253 0.747 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.200 0.800 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.183 -27.618 -0.763 30.613 hybrid contribution 0.036 1.027 0.112 1.034 sum 13.220 -26.591 -0.650 29.703 Atomic orbital electron populations 1.70171 1.08268 1.27793 1.51525 1.26126 0.95722 1.03905 0.94698 0.85333 0.78708 0.77813 0.78463 1.19833 1.21201 1.17882 1.21727 0.94014 0.91660 1.50694 0.90628 1.18704 0.93738 0.92340 0.94900 1.21648 0.99369 0.89843 1.05017 1.21312 0.87799 0.86326 0.73949 1.90675 1.16432 1.88209 1.50825 1.45976 1.11077 1.04042 1.76272 1.19613 0.90437 0.77534 1.04647 1.22439 1.01340 0.98779 0.84414 1.22077 0.99313 0.97319 1.00645 1.22139 1.01842 1.01335 0.91732 1.24335 1.01087 0.96921 0.94956 1.96878 1.67112 1.57085 1.64362 1.84080 1.47757 1.39626 1.35887 0.92864 0.99879 0.99583 0.87418 0.87857 0.74695 0.90736 0.87158 0.79961 0.79535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.31 13.29 21.45 0.28 -59.02 16 2 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.04 2.24 4.26 29.85 0.13 2.37 16 10 C -0.12 -4.65 5.64 29.85 0.17 -4.48 16 11 C 0.52 19.18 7.83 87.66 0.69 19.87 16 12 O -0.58 -27.45 15.98 -3.03 -0.05 -27.49 16 13 N -0.72 -18.58 5.55 -466.78 -2.59 -21.17 16 14 C 0.20 4.61 6.20 85.63 0.53 5.14 16 15 C -0.02 -0.35 6.69 24.83 0.17 -0.19 16 16 C -0.17 -2.67 10.81 22.19 0.24 -2.43 16 17 C -0.15 -2.17 10.86 22.22 0.24 -1.93 16 18 C -0.04 -0.82 7.80 66.99 0.52 -0.30 16 19 Br 0.06 0.92 34.09 -20.37 -0.69 0.22 16 20 O -0.18 -3.92 10.65 -2.97 -0.03 -3.95 16 21 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 22 H -0.02 -1.08 8.10 -2.38 -0.02 -1.09 16 23 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 24 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 25 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 26 H 0.42 8.36 8.46 -92.71 -0.78 7.57 16 27 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 30 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -74.53 294.48 2.70 -71.83 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.38 Total: 5.78 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 3.38 Total: -12.35 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.30 Total: -80.19 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.08 Total: -31.44 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 35 Polarization: 0.92 SS G_CDS: -0.69 Total: 0.22 kcal Total: -74.53 2.70 -71.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347459970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.897 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds