Wall clock time and date at job start Tue Mar 31 2020 08:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86805 * 120.00494 * 2 1 4 4 H 1.48496 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46666 * 299.99785 * 3 2 1 6 6 H 1.48503 * 109.47166 * 59.99481 * 3 2 1 7 7 C 1.38802 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00254 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99757 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00094 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00264 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00487 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47394 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47170 * 179.97438 * 15 14 13 17 17 C 1.38425 * 120.02136 * 90.00332 * 16 15 14 18 18 F 1.35101 * 120.01402 * 359.70506 * 17 16 15 19 19 C 1.38476 * 119.97328 * 179.97438 * 17 16 15 20 20 C 1.38207 * 120.02410 * 0.02562 * 19 17 16 21 21 C 1.38207 * 120.05360 * 359.97438 * 20 19 17 22 22 C 1.38412 * 120.02814 * 269.97965 * 16 15 14 23 23 F 1.35096 * 120.01191 * 0.02562 * 22 16 15 24 24 H 0.96998 * 119.99179 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47453 * 60.00322 * 10 9 7 26 26 H 1.09006 * 109.47484 * 300.00090 * 10 9 7 27 27 H 0.97004 * 119.99419 * 0.02562 * 13 11 10 28 28 H 1.09008 * 109.46641 * 60.00358 * 14 13 11 29 29 H 1.08994 * 109.47113 * 300.01099 * 14 13 11 30 30 H 1.09008 * 109.46866 * 60.00579 * 15 14 13 31 31 H 1.09006 * 109.47655 * 300.00440 * 15 14 13 32 32 H 1.08001 * 119.98752 * 179.97438 * 19 17 16 33 33 H 1.08000 * 119.97200 * 180.02562 * 20 19 17 34 34 H 1.07995 * 119.99247 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8918 2.3963 -1.2126 6 1 1.8917 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8438 -6.3432 0.0008 14 6 2.3301 -7.7152 0.0008 15 6 3.5021 -8.6987 -0.0004 16 6 2.9735 -10.1099 0.0003 17 6 2.7294 -10.7587 -1.1979 18 9 2.9592 -10.1248 -2.3686 19 6 2.2443 -12.0556 -1.1961 20 6 2.0033 -12.7022 0.0014 21 6 2.2467 -12.0555 1.1984 22 6 2.7323 -10.7586 1.1990 23 9 2.9701 -10.1267 2.3691 24 1 -0.4849 0.8401 -0.0004 25 1 3.1243 -3.7315 0.8905 26 1 3.1244 -3.7314 -0.8895 27 1 3.8006 -6.1836 0.0004 28 1 1.7212 -7.8751 -0.8891 29 1 1.7217 -7.8753 0.8908 30 1 4.1113 -8.5389 0.8893 31 1 4.1101 -8.5384 -0.8907 32 1 2.0533 -12.5619 -2.1308 33 1 1.6253 -13.7139 0.0018 34 1 2.0576 -12.5615 2.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046731402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:59 Heat of formation + Delta-G solvation = -111.778545 kcal Electronic energy + Delta-G solvation = -20671.118135 eV Core-core repulsion = 16944.890678 eV Total energy + Delta-G solvation = -3726.227457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.069 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -49.36004 -49.35840 -39.49415 -38.98330 -35.52860 -32.94504 -32.41308 -30.72532 -29.92672 -27.97217 -25.48440 -23.98906 -23.29864 -21.76872 -20.37460 -18.53221 -17.83271 -17.76997 -16.66879 -16.45590 -15.99163 -15.97099 -15.70082 -15.63711 -15.38329 -14.79325 -14.78016 -14.15183 -14.05988 -13.69544 -13.20076 -13.17041 -12.64113 -12.55627 -12.51225 -12.07988 -12.01372 -11.72186 -11.38664 -11.05762 -11.00442 -10.74657 -9.79706 -9.46251 -9.26458 -9.19002 -9.06500 -8.89154 -8.21360 -6.48340 -6.20383 -3.90704 0.50291 0.52555 2.86672 3.05822 3.11849 3.22718 3.29194 3.33903 3.46090 3.68644 3.97135 4.15404 4.19863 4.21664 4.39798 4.68663 4.74221 4.88116 5.14837 5.16016 5.20154 5.38409 5.41138 5.49632 5.51701 5.63511 5.69615 5.79713 5.90298 5.92170 6.15837 6.31155 6.59533 7.61327 7.71032 8.36949 8.62556 9.25040 10.87158 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.035841 B = 0.002460 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.039706 B =11380.095677 C =11592.083913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.129 3.871 15 C -0.092 4.092 16 C -0.151 4.151 17 C 0.135 3.865 18 F -0.126 7.126 19 C -0.163 4.163 20 C -0.064 4.064 21 C -0.163 4.163 22 C 0.135 3.865 23 F -0.126 7.126 24 H 0.268 0.732 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.399 0.601 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 -27.025 -0.001 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.394 5.394 14 C 0.005 3.995 15 C -0.130 4.130 16 C -0.154 4.154 17 C 0.116 3.884 18 F -0.104 7.104 19 C -0.182 4.182 20 C -0.082 4.082 21 C -0.182 4.182 22 C 0.116 3.884 23 F -0.104 7.104 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.233 0.767 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.892 -27.193 0.000 28.052 hybrid contribution 2.505 1.508 0.000 2.924 sum 9.397 -25.684 0.000 27.349 Atomic orbital electron populations 1.70034 1.05954 1.27325 1.46988 1.25005 0.95039 0.99055 0.94571 0.86108 0.79575 0.81862 0.77888 1.19621 1.20567 1.20572 1.22911 0.94943 0.91623 1.58770 0.90864 1.85412 1.04979 0.96352 1.96709 1.23528 1.06563 0.95255 1.04984 1.20323 0.86512 0.86265 0.75117 1.90703 1.15380 1.85599 1.47392 1.45955 1.10017 1.05261 1.78129 1.21158 0.95155 0.80460 1.02751 1.20669 0.98427 0.89049 1.04852 1.19706 1.06214 0.98089 0.91364 1.17232 0.99463 0.91115 0.80627 1.91553 1.91880 1.81892 1.45079 1.21243 1.02943 0.93613 1.00422 1.20871 0.96685 1.00124 0.90495 1.21243 1.02957 0.93593 1.00427 1.17228 0.99434 0.91137 0.80635 1.91552 1.91733 1.81991 1.45131 0.92247 0.89159 0.89149 0.76745 0.91388 0.91382 0.89247 0.89239 0.83861 0.83821 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.29 7.85 -10.99 -0.09 10.20 16 12 O -0.52 -12.18 15.86 5.56 0.09 -12.09 16 13 N -0.74 -10.34 5.56 -60.30 -0.33 -10.68 16 14 C 0.13 1.64 5.66 -4.05 -0.02 1.62 16 15 C -0.09 -0.87 5.10 -27.89 -0.14 -1.01 16 16 C -0.15 -1.41 5.15 -104.49 -0.54 -1.95 16 17 C 0.14 1.20 7.24 -39.42 -0.29 0.92 16 18 F -0.13 -1.28 16.48 2.25 0.04 -1.24 16 19 C -0.16 -1.07 10.03 -39.50 -0.40 -1.47 16 20 C -0.06 -0.34 10.04 -39.60 -0.40 -0.74 16 21 C -0.16 -1.07 10.03 -39.50 -0.40 -1.47 16 22 C 0.14 1.20 7.24 -39.43 -0.29 0.92 16 23 F -0.13 -1.28 16.48 2.25 0.04 -1.24 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 25 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 26 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 27 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 28 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 0.76 7.64 -51.92 -0.40 0.37 16 31 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -35.27 325.13 -7.55 -42.82 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -3.64 Total: -0.46 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.13 Total: -8.99 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.40 Total: -36.37 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.07 Total: -2.49 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.27 -7.55 -42.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046731402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.957 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds