Wall clock time and date at job start Tue Mar 31 2020 07:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.38266 * 119.97806 * 269.71974 * 15 14 12 17 17 C 1.38206 * 120.03765 * 179.77096 * 16 15 14 18 18 C 1.38347 * 119.99606 * 0.50738 * 17 16 15 19 19 Cl 1.73602 * 120.01713 * 179.72717 * 18 17 16 20 20 C 1.38447 * 119.96347 * 359.74726 * 18 17 16 21 21 Cl 1.73599 * 120.01568 * 180.02562 * 20 18 17 22 22 C 1.38204 * 119.97954 * 90.00188 * 15 14 12 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 31 31 H 1.08002 * 119.98400 * 0.02562 * 16 15 14 32 32 H 1.07997 * 120.00293 * 180.25702 * 17 16 15 33 33 H 1.07999 * 120.00293 * 359.94871 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.8096 -4.1412 -1.2103 17 6 3.7114 -5.1885 -1.2163 18 6 4.1617 -5.7204 -0.0212 19 17 5.2890 -7.0406 -0.0281 20 6 3.7124 -5.1996 1.1804 21 17 4.2770 -5.8655 2.6808 22 6 2.8136 -4.1478 1.1845 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8505 29 1 0.7588 -2.5340 0.8844 30 1 0.7590 -2.5261 -0.8955 31 1 2.4551 -3.7289 -2.1434 32 1 4.0615 -5.5943 -2.1539 33 1 2.4631 -3.7408 2.1215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057722991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:13 Heat of formation + Delta-G solvation = -28.617902 kcal Electronic energy + Delta-G solvation = -19274.607443 eV Core-core repulsion = 15965.905981 eV Total energy + Delta-G solvation = -3308.701462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93512 -38.63108 -36.64529 -36.59977 -34.85643 -32.90254 -32.35116 -30.98568 -28.54856 -27.07125 -25.64991 -23.12600 -23.03088 -21.56803 -18.58143 -17.31892 -16.61871 -16.38252 -16.15324 -15.81446 -15.17352 -14.61630 -14.29143 -14.06170 -13.97883 -13.54959 -12.84208 -12.73029 -12.25422 -12.05122 -11.97514 -11.91909 -11.89459 -11.49856 -11.29916 -11.23686 -11.06735 -10.94104 -10.88639 -10.61277 -10.19246 -9.64978 -9.14310 -8.97075 -8.59235 -8.46850 -7.70160 -6.07562 -4.12573 0.88304 1.04601 1.75282 2.12018 3.27349 3.30051 3.34130 3.36073 3.39813 3.98412 4.41884 4.51123 4.60199 4.99979 5.04283 5.11683 5.19073 5.28093 5.39846 5.52027 5.59103 5.72171 5.83364 5.87440 5.96184 6.15551 6.34603 6.51439 7.00203 7.40191 7.48368 7.88491 8.19407 8.34439 8.85868 9.02604 9.52738 11.00611 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.003448 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.311185 B = 8119.623447 C = 8563.172482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.602 5.602 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.533 6.533 14 C -0.107 4.107 15 C -0.036 4.036 16 C -0.088 4.088 17 C -0.097 4.097 18 C -0.036 4.036 19 Cl -0.059 7.059 20 C -0.028 4.028 21 Cl -0.056 7.056 22 C -0.086 4.086 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 -18.822 2.458 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.410 6.410 14 C -0.147 4.147 15 C -0.037 4.037 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.063 4.063 19 Cl -0.030 7.030 20 C -0.055 4.055 21 Cl -0.027 7.027 22 C -0.105 4.105 23 H 0.064 0.936 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.810 -18.797 2.644 19.583 hybrid contribution 0.304 0.350 -0.842 0.961 sum -4.506 -18.447 1.803 19.075 Atomic orbital electron populations 1.21669 0.81390 1.02681 1.00511 1.48167 1.06199 1.07759 1.71354 1.19305 0.92574 0.77976 0.97562 1.21456 1.36534 1.06302 0.92266 0.92423 1.24944 0.95327 0.96405 0.97445 1.69939 1.38328 1.14349 1.30686 0.86446 0.78130 0.78319 0.84539 1.19813 1.20939 1.20851 1.20081 0.88114 0.84650 0.78137 1.90716 1.13670 1.87032 1.49539 1.20823 0.97368 0.91436 1.05091 1.19437 0.96826 0.94908 0.92488 1.21104 0.96185 0.94927 0.98405 1.20971 0.97407 0.96772 0.96405 1.20710 0.97511 0.94501 0.93597 1.98371 1.59879 1.45834 1.98893 1.20653 1.00236 0.98287 0.86332 1.98375 1.88263 1.84732 1.31347 1.20857 0.96194 0.94232 0.99208 0.93639 0.90669 0.92402 0.94967 0.93814 0.92730 0.88137 0.87860 0.84410 0.84085 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.25 59.85 0.61 1.79 16 2 N -0.60 -12.10 2.86 -182.95 -0.52 -12.62 16 3 C 0.24 6.27 5.16 -5.20 -0.03 6.24 16 4 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.50 9.78 7.67 -10.98 -0.08 9.70 16 13 O -0.53 -12.93 15.61 5.55 0.09 -12.84 16 14 C -0.11 -1.38 4.38 -29.03 -0.13 -1.51 16 15 C -0.04 -0.48 4.37 -104.62 -0.46 -0.93 16 16 C -0.09 -1.10 9.70 -39.58 -0.38 -1.48 16 17 C -0.10 -1.15 9.83 -39.55 -0.39 -1.54 16 18 C -0.04 -0.46 6.32 -39.46 -0.25 -0.71 16 19 Cl -0.06 -0.69 27.96 -51.86 -1.45 -2.14 16 20 C -0.03 -0.36 6.32 -39.46 -0.25 -0.61 16 21 Cl -0.06 -0.69 27.96 -51.86 -1.45 -2.14 16 22 C -0.09 -1.13 9.48 -39.55 -0.38 -1.51 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 25 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.10 1.09 7.34 -51.93 -0.38 0.71 16 31 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -32.95 320.70 -8.53 -41.48 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -3.59 Total: -3.56 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.15 Total: -3.94 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.21 Total: -38.26 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -2.90 Total: -4.28 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.95 -8.53 -41.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057722991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.862 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds