Wall clock time and date at job start Tue Mar 31 2020 07:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.38266 * 119.97806 * 269.71974 * 15 14 12 17 17 C 1.38206 * 120.03765 * 179.77096 * 16 15 14 18 18 C 1.38347 * 119.99606 * 0.50738 * 17 16 15 19 19 Cl 1.73602 * 120.01713 * 179.72717 * 18 17 16 20 20 C 1.38447 * 119.96347 * 359.74726 * 18 17 16 21 21 Cl 1.73599 * 120.01568 * 180.02562 * 20 18 17 22 22 C 1.38204 * 119.97954 * 90.00188 * 15 14 12 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 31 31 H 1.08002 * 119.98400 * 0.02562 * 16 15 14 32 32 H 1.07997 * 120.00293 * 180.25702 * 17 16 15 33 33 H 1.07999 * 120.00293 * 359.94871 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.8096 -4.1412 -1.2103 17 6 3.7114 -5.1885 -1.2163 18 6 4.1617 -5.7204 -0.0212 19 17 5.2890 -7.0406 -0.0281 20 6 3.7124 -5.1996 1.1804 21 17 4.2770 -5.8655 2.6808 22 6 2.8136 -4.1478 1.1845 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8505 29 1 0.7588 -2.5340 0.8844 30 1 0.7590 -2.5261 -0.8955 31 1 2.4551 -3.7289 -2.1434 32 1 4.0615 -5.5943 -2.1539 33 1 2.4631 -3.7408 2.1215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057722991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:13 Heat of formation + Delta-G solvation = -47.863769 kcal Electronic energy + Delta-G solvation = -19275.442006 eV Core-core repulsion = 15965.905981 eV Total energy + Delta-G solvation = -3309.536025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09865 -39.93983 -37.61779 -37.55424 -36.52030 -34.75361 -33.62930 -31.92859 -30.19833 -28.37420 -27.14102 -24.87362 -24.01420 -22.74049 -20.02934 -18.67895 -18.30736 -17.81495 -17.20873 -17.11337 -16.60808 -16.15926 -15.86952 -15.06650 -14.92527 -14.64304 -14.40505 -14.21689 -13.75276 -13.42611 -13.21159 -13.15230 -12.92063 -12.82874 -12.79967 -12.50383 -12.46298 -12.28766 -12.17997 -12.00045 -11.88420 -11.65156 -10.64793 -10.63675 -9.95420 -9.61728 -9.37424 -8.21217 -6.36005 -0.09766 0.09937 0.79505 1.16527 1.37425 1.39921 1.51323 1.88598 2.23870 2.39267 2.66820 3.08737 3.55115 3.63820 3.93059 4.07975 4.12813 4.22415 4.45858 4.53810 4.63474 4.76842 4.81054 4.88270 5.01227 5.02483 5.08028 5.26054 5.38661 5.58498 5.59593 5.86550 6.07744 6.72398 6.83453 7.30488 7.52918 8.85925 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.003448 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.311185 B = 8119.623447 C = 8563.172482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.270 1.270 11 H -0.284 1.284 12 C 0.496 3.504 13 O -0.593 6.593 14 C -0.090 4.090 15 C -0.051 4.051 16 C -0.094 4.094 17 C -0.098 4.098 18 C -0.046 4.046 19 Cl -0.053 7.053 20 C -0.042 4.042 21 Cl -0.055 7.055 22 C -0.095 4.095 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.022 0.978 27 H -0.005 1.005 28 H 0.266 0.734 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 -19.973 1.087 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.196 1.196 11 H -0.211 1.211 12 C 0.285 3.715 13 O -0.474 6.474 14 C -0.129 4.129 15 C -0.052 4.052 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.073 4.073 19 Cl -0.024 7.024 20 C -0.069 4.069 21 Cl -0.026 7.026 22 C -0.114 4.114 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.172 0.828 32 H 0.181 0.819 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.513 -19.973 1.278 21.047 hybrid contribution 0.829 0.669 -0.359 1.124 sum -5.684 -19.304 0.919 20.145 Atomic orbital electron populations 1.21997 0.77639 1.04314 1.02743 1.48185 1.08514 1.06219 1.71329 1.18730 0.91037 0.80580 0.95952 1.21760 1.36495 1.06425 0.93137 0.92511 1.25876 0.95010 0.96556 1.01875 1.70062 1.39087 1.14869 1.33029 0.85375 0.77745 0.78467 0.79271 1.18740 1.19553 1.21056 1.21209 0.87808 0.86265 0.76224 1.90683 1.16642 1.88061 1.52050 1.20802 0.96942 0.86799 1.08349 1.19598 0.97518 0.95287 0.92839 1.21399 0.96007 0.94886 0.98888 1.21260 0.96939 0.96457 0.97013 1.20912 0.97690 0.94801 0.93900 1.98369 1.59657 1.45504 1.98893 1.20811 1.00694 0.98724 0.86693 1.98369 1.88263 1.84696 1.31233 1.21046 0.96251 0.94274 0.99780 0.91074 0.91805 0.88022 0.96032 0.98680 0.92503 0.84667 0.84494 0.82799 0.81919 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.94 10.25 127.77 1.31 3.25 16 2 N -0.61 -24.14 2.86 -851.12 -2.43 -26.57 16 3 C 0.26 13.66 5.16 85.63 0.44 14.10 16 4 C -0.54 -30.46 9.39 25.60 0.24 -30.22 16 5 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.31 5.46 84.66 0.46 0.78 16 7 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 8 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.50 18.78 7.67 87.66 0.67 19.45 16 13 O -0.59 -29.41 15.61 -3.04 -0.05 -29.46 16 14 C -0.09 -2.03 4.38 29.10 0.13 -1.90 16 15 C -0.05 -1.27 4.37 -19.87 -0.09 -1.36 16 16 C -0.09 -2.14 9.70 22.27 0.22 -1.93 16 17 C -0.10 -2.16 9.83 22.29 0.22 -1.94 16 18 C -0.05 -1.11 6.32 22.35 0.14 -0.97 16 19 Cl -0.05 -1.19 27.96 -2.72 -0.08 -1.27 16 20 C -0.04 -1.07 6.32 22.35 0.14 -0.93 16 21 Cl -0.05 -1.31 27.96 -2.72 -0.08 -1.39 16 22 C -0.09 -2.38 9.48 22.29 0.21 -2.17 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 25 H 0.10 1.75 6.43 -2.39 -0.02 1.73 16 26 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 27 H 0.00 -0.31 7.42 -2.38 -0.02 -0.32 16 28 H 0.27 15.04 8.31 -92.72 -0.77 14.27 16 29 H 0.14 2.14 8.05 -2.38 -0.02 2.13 16 30 H 0.14 2.20 7.34 -2.39 -0.02 2.18 16 31 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -74.72 320.70 4.90 -69.82 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.13 Total: 2.23 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.10 Total: -3.83 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -2.15 Total: -82.43 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.05 Total: -29.46 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.15 Total: -2.65 kcal Total: -74.72 4.90 -69.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057722991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.953 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds