Wall clock time and date at job start Tue Mar 31 2020 07:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47252 * 2 1 4 4 C 1.50701 * 109.47237 * 239.99583 * 2 1 3 5 5 H 1.08001 * 119.99548 * 240.00292 * 4 2 1 6 6 C 1.37878 * 120.00093 * 60.00094 * 4 2 1 7 7 N 1.31512 * 119.99574 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47198 * 60.00226 * 8 6 4 10 10 H 1.48498 * 109.46761 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47143 * 300.00144 * 8 6 4 12 12 N 1.46507 * 109.46651 * 119.99616 * 2 1 3 13 13 C 1.46495 * 119.99862 * 60.00300 * 12 2 1 14 14 C 1.34771 * 119.99660 * 239.99816 * 12 2 1 15 15 O 1.21558 * 120.00319 * 4.47203 * 14 12 2 16 16 C 1.47776 * 119.99705 * 184.47186 * 14 12 2 17 17 C 1.39627 * 120.15184 * 310.23142 * 16 14 12 18 18 C 1.37898 * 119.89385 * 180.02562 * 17 16 14 19 19 C 1.38413 * 120.19473 * 359.97438 * 18 17 16 20 20 C 1.38371 * 120.30423 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.94729 * 180.02562 * 20 19 18 22 22 C 1.38281 * 120.10297 * 0.02562 * 20 19 18 23 23 Cl 1.73603 * 120.09481 * 179.70536 * 22 20 19 24 24 H 1.08997 * 109.46969 * 300.00293 * 1 2 3 25 25 H 1.09002 * 109.46686 * 60.00430 * 1 2 3 26 26 H 1.09003 * 109.47062 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99658 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.47128 * 272.97247 * 13 12 2 29 29 H 1.08998 * 109.47423 * 32.97414 * 13 12 2 30 30 H 1.09004 * 109.47088 * 152.97647 * 13 12 2 31 31 H 1.08006 * 120.05318 * 0.04059 * 17 16 14 32 32 H 1.07995 * 119.90259 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.84397 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.8282 -2.5201 -4.0080 10 1 1.8271 -0.4203 -5.2203 11 1 3.8077 -1.1193 -4.0075 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0200 1.1493 1.9338 16 6 3.3668 -0.7577 3.2380 17 6 2.5498 -1.5520 4.0448 18 6 3.0906 -2.2231 5.1212 19 6 4.4411 -2.1120 5.4037 20 6 5.2583 -1.3272 4.6095 21 17 6.9509 -1.1950 4.9718 22 6 4.7288 -0.6479 3.5276 23 17 5.7528 0.3429 2.5358 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.7097 1.1616 -3.4845 28 1 0.7106 -2.1451 1.9533 29 1 1.5813 -2.6097 0.4720 30 1 2.4378 -2.5680 2.0317 31 1 1.4958 -1.6408 3.8261 32 1 2.4587 -2.8371 5.7457 33 1 4.8588 -2.6404 6.2478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:50 Heat of formation + Delta-G solvation = -16.202670 kcal Electronic energy + Delta-G solvation = -20041.995203 eV Core-core repulsion = 16733.832106 eV Total energy + Delta-G solvation = -3308.163097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12933 -38.30447 -36.59674 -36.37702 -35.38025 -33.01548 -31.35487 -30.79330 -29.12783 -26.30076 -25.25417 -24.07548 -22.85037 -21.20234 -19.03651 -17.29443 -16.74067 -16.31469 -16.06500 -15.60529 -15.04416 -14.42708 -14.40605 -14.08519 -13.85379 -13.13883 -12.61248 -12.55020 -12.25347 -11.93869 -11.84519 -11.71352 -11.54513 -11.24867 -11.22458 -11.06108 -10.86935 -10.74580 -10.69689 -10.28530 -10.18699 -9.28332 -9.16913 -8.94252 -8.81909 -8.44657 -7.67220 -6.09369 -4.17545 0.71638 0.82463 1.76424 2.21639 3.02262 3.27247 3.32592 3.33732 3.48819 3.83094 4.37023 4.54482 4.66457 4.88860 4.95044 5.14322 5.22075 5.37316 5.66430 5.72559 5.88357 5.92345 6.02882 6.30912 6.34581 6.71799 6.79036 7.01603 7.33877 7.47647 7.67868 7.97570 8.14945 8.42123 8.75890 8.93410 9.48741 10.95983 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.021070 B = 0.004632 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.586966 B = 6042.857260 C = 6580.501520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.581 5.581 13 C 0.077 3.923 14 C 0.544 3.456 15 O -0.526 6.526 16 C -0.093 4.093 17 C -0.077 4.077 18 C -0.111 4.111 19 C -0.090 4.090 20 C -0.039 4.039 21 Cl -0.051 7.051 22 C 0.006 3.994 23 Cl -0.022 7.022 24 H 0.012 0.988 25 H 0.094 0.906 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -8.383 15.867 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.067 4.067 14 C 0.329 3.671 15 O -0.403 6.403 16 C -0.098 4.098 17 C -0.096 4.096 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.067 4.067 21 Cl -0.022 7.022 22 C -0.023 4.023 23 Cl 0.007 6.993 24 H 0.031 0.969 25 H 0.113 0.887 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.812 -7.514 15.524 17.905 hybrid contribution 0.539 -0.533 -0.887 1.168 sum 5.351 -8.047 14.636 17.539 Atomic orbital electron populations 1.22083 0.97969 0.99456 1.00931 1.19001 0.91004 0.94543 0.79464 0.91707 1.21254 1.32030 1.13146 0.90198 0.92233 1.24872 0.94874 0.94953 0.98924 1.69867 1.36194 1.22469 1.23928 0.86553 0.79308 0.79564 0.81970 1.20207 1.21137 1.20207 1.48185 1.48116 1.11663 1.23168 1.21811 0.98741 0.83393 1.02748 1.17941 0.80076 0.86982 0.82121 1.90791 1.60165 1.14599 1.74750 1.20169 0.91811 0.99159 0.98638 1.21538 1.00630 0.93790 0.93612 1.21129 0.94430 0.99958 0.97464 1.21123 0.93339 0.97493 0.98984 1.20664 0.86869 1.01985 0.97173 1.98383 1.12667 1.97132 1.94038 1.20812 0.91524 0.96407 0.93565 1.98436 1.66065 1.67091 1.67702 0.96933 0.88715 0.95097 0.92577 0.93512 0.89929 0.92449 0.83744 0.84004 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.52 2.63 -69.08 -0.18 6.34 16 3 H 0.07 1.90 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -14.06 8.01 -34.44 -0.28 -14.33 16 5 H 0.06 1.56 7.28 -52.49 -0.38 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.58 -12.21 2.75 -176.40 -0.49 -12.70 16 13 C 0.08 1.25 8.13 59.84 0.49 1.73 16 14 C 0.54 11.39 6.74 -12.36 -0.08 11.30 16 15 O -0.53 -12.98 15.22 5.31 0.08 -12.90 16 16 C -0.09 -1.53 4.87 -104.94 -0.51 -2.04 16 17 C -0.08 -0.93 7.63 -39.19 -0.30 -1.23 16 18 C -0.11 -1.03 10.03 -39.64 -0.40 -1.43 16 19 C -0.09 -0.89 9.82 -39.47 -0.39 -1.28 16 20 C -0.04 -0.50 6.32 -39.52 -0.25 -0.75 16 21 Cl -0.05 -0.61 27.95 -51.86 -1.45 -2.06 16 22 C 0.01 0.09 6.34 -39.03 -0.25 -0.16 16 23 Cl -0.02 -0.40 26.19 -51.86 -1.36 -1.76 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.05 0.64 7.58 -51.93 -0.39 0.25 16 29 H 0.08 1.43 6.98 -51.93 -0.36 1.07 16 30 H 0.06 0.80 5.70 -51.93 -0.30 0.50 16 31 H 0.14 1.54 6.64 -52.48 -0.35 1.20 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -30.68 306.49 -8.15 -38.83 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -3.26 Total: -2.52 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.91 Total: -3.22 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.14 Total: -36.88 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -2.81 Total: -3.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.68 -8.15 -38.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.628 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds