Wall clock time and date at job start Tue Mar 31 2020 07:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47252 * 2 1 4 4 C 1.50701 * 109.47237 * 239.99583 * 2 1 3 5 5 H 1.08001 * 119.99548 * 240.00292 * 4 2 1 6 6 C 1.37878 * 120.00093 * 60.00094 * 4 2 1 7 7 N 1.31512 * 119.99574 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47198 * 60.00226 * 8 6 4 10 10 H 1.48498 * 109.46761 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47143 * 300.00144 * 8 6 4 12 12 N 1.46507 * 109.46651 * 119.99616 * 2 1 3 13 13 C 1.46495 * 119.99862 * 60.00300 * 12 2 1 14 14 C 1.34771 * 119.99660 * 239.99816 * 12 2 1 15 15 O 1.21558 * 120.00319 * 4.47203 * 14 12 2 16 16 C 1.47776 * 119.99705 * 184.47186 * 14 12 2 17 17 C 1.39627 * 120.15184 * 310.23142 * 16 14 12 18 18 C 1.37898 * 119.89385 * 180.02562 * 17 16 14 19 19 C 1.38413 * 120.19473 * 359.97438 * 18 17 16 20 20 C 1.38371 * 120.30423 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.94729 * 180.02562 * 20 19 18 22 22 C 1.38281 * 120.10297 * 0.02562 * 20 19 18 23 23 Cl 1.73603 * 120.09481 * 179.70536 * 22 20 19 24 24 H 1.08997 * 109.46969 * 300.00293 * 1 2 3 25 25 H 1.09002 * 109.46686 * 60.00430 * 1 2 3 26 26 H 1.09003 * 109.47062 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99658 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.47128 * 272.97247 * 13 12 2 29 29 H 1.08998 * 109.47423 * 32.97414 * 13 12 2 30 30 H 1.09004 * 109.47088 * 152.97647 * 13 12 2 31 31 H 1.08006 * 120.05318 * 0.04059 * 17 16 14 32 32 H 1.07995 * 119.90259 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.84397 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.8282 -2.5201 -4.0080 10 1 1.8271 -0.4203 -5.2203 11 1 3.8077 -1.1193 -4.0075 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0200 1.1493 1.9338 16 6 3.3668 -0.7577 3.2380 17 6 2.5498 -1.5520 4.0448 18 6 3.0906 -2.2231 5.1212 19 6 4.4411 -2.1120 5.4037 20 6 5.2583 -1.3272 4.6095 21 17 6.9509 -1.1950 4.9718 22 6 4.7288 -0.6479 3.5276 23 17 5.7528 0.3429 2.5358 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.7097 1.1616 -3.4845 28 1 0.7106 -2.1451 1.9533 29 1 1.5813 -2.6097 0.4720 30 1 2.4378 -2.5680 2.0317 31 1 1.4958 -1.6408 3.8261 32 1 2.4587 -2.8371 5.7457 33 1 4.8588 -2.6404 6.2478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:50 Heat of formation + Delta-G solvation = -34.388026 kcal Electronic energy + Delta-G solvation = -20042.783779 eV Core-core repulsion = 16733.832106 eV Total energy + Delta-G solvation = -3308.951673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41429 -39.61005 -37.60165 -37.55408 -37.12938 -34.87043 -32.67346 -31.76907 -30.80609 -27.72260 -27.30391 -25.33924 -23.81506 -22.77587 -20.55056 -18.69382 -18.33612 -17.79142 -17.32394 -17.05909 -16.50876 -15.90576 -15.68489 -15.21577 -15.04135 -14.75680 -14.33702 -13.94497 -13.58283 -13.27179 -13.11186 -12.96892 -12.93992 -12.84227 -12.71860 -12.60093 -12.32403 -12.26168 -12.15514 -12.12074 -11.87599 -11.21683 -10.79599 -10.51269 -10.02680 -9.81394 -9.36964 -8.15163 -6.31378 -0.29675 -0.12487 0.74080 1.14381 1.40753 1.43418 1.50391 1.72099 2.18684 2.42720 2.49773 3.13202 3.40523 3.78642 3.85577 4.10999 4.21445 4.36484 4.43725 4.69847 4.77403 4.85909 4.91347 5.00826 5.03675 5.06459 5.14979 5.47404 5.51863 5.59022 5.65724 6.03012 6.15341 6.72548 6.75112 7.23976 7.42416 8.89093 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.021070 B = 0.004632 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.586966 B = 6042.857260 C = 6580.501520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.281 1.281 12 N -0.588 5.588 13 C 0.074 3.926 14 C 0.538 3.462 15 O -0.580 6.580 16 C -0.121 4.121 17 C -0.072 4.072 18 C -0.085 4.085 19 C -0.071 4.071 20 C -0.047 4.047 21 Cl -0.048 7.048 22 C -0.018 4.018 23 Cl -0.059 7.059 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.265 0.735 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.195 0.805 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -11.826 18.250 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.787 3.213 9 H -0.184 1.184 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.318 5.318 13 C -0.068 4.068 14 C 0.325 3.675 15 O -0.462 6.462 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.103 4.103 19 C -0.090 4.090 20 C -0.074 4.074 21 Cl -0.019 7.019 22 C -0.047 4.047 23 Cl -0.030 7.030 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.212 0.788 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.296 -11.007 17.932 21.475 hybrid contribution 0.704 0.495 -1.485 1.717 sum 5.000 -10.511 16.447 20.149 Atomic orbital electron populations 1.21854 0.96633 1.00343 1.00068 1.18572 0.91942 0.92109 0.81152 0.97347 1.21509 1.31998 1.13134 0.91107 0.92252 1.25685 0.95031 0.95611 1.01865 1.70012 1.37188 1.23723 1.24490 0.85558 0.78256 0.79192 0.78321 1.18446 1.20825 1.20644 1.48145 1.48251 1.13432 1.21966 1.22065 1.01270 0.80453 1.02989 1.18656 0.79131 0.86632 0.83041 1.90745 1.61761 1.17218 1.76433 1.19833 0.92511 1.01680 0.98468 1.21812 1.00977 0.92698 0.93576 1.21681 0.94474 0.98186 0.95910 1.21692 0.93317 0.95384 0.98595 1.20868 0.87575 1.02222 0.96758 1.98386 1.12492 1.97165 1.93833 1.20985 0.91274 0.97621 0.94777 1.98414 1.67056 1.68490 1.69063 0.95922 0.91400 0.93102 0.92611 0.90268 0.91225 0.89775 0.82029 0.78827 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.97 71.98 0.65 -5.55 16 2 C 0.26 13.78 2.63 44.25 0.12 13.90 16 3 H 0.01 0.54 6.91 -2.39 -0.02 0.52 16 4 C -0.54 -29.41 8.01 25.60 0.21 -29.21 16 5 H 0.06 3.16 7.28 -2.91 -0.02 3.14 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.92 -52.88 11.32 21.45 0.24 -52.64 16 8 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 9 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.59 -25.01 2.75 -830.29 -2.29 -27.30 16 13 C 0.07 2.26 8.13 127.77 1.04 3.30 16 14 C 0.54 23.16 6.74 86.77 0.58 23.74 16 15 O -0.58 -30.58 15.22 -3.90 -0.06 -30.64 16 16 C -0.12 -3.85 4.87 -20.07 -0.10 -3.94 16 17 C -0.07 -1.47 7.63 22.52 0.17 -1.30 16 18 C -0.08 -1.04 10.03 22.23 0.22 -0.82 16 19 C -0.07 -1.03 9.82 22.34 0.22 -0.81 16 20 C -0.05 -1.09 6.32 22.31 0.14 -0.94 16 21 Cl -0.05 -1.06 27.95 -2.72 -0.08 -1.14 16 22 C -0.02 -0.57 6.34 22.63 0.14 -0.42 16 23 Cl -0.06 -2.21 26.19 -2.72 -0.07 -2.29 16 24 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 26 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 27 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 28 H 0.08 1.89 7.58 -2.38 -0.02 1.87 16 29 H 0.07 2.31 6.98 -2.39 -0.02 2.29 16 30 H 0.08 2.10 5.70 -2.39 -0.01 2.09 16 31 H 0.16 2.71 6.64 -2.91 -0.02 2.69 16 32 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -73.33 306.49 4.76 -68.57 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.15 Total: 0.74 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 3.84 Total: -0.62 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.04 Total: -79.94 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.06 Total: -30.64 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.15 Total: -3.42 kcal Total: -73.33 4.76 -68.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.184 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds