Wall clock time and date at job start Tue Mar 31 2020 07:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46827 * 2 1 4 4 C 1.53003 * 109.46940 * 240.00352 * 2 1 3 5 5 C 1.50698 * 109.47125 * 65.70194 * 4 2 1 6 6 C 1.38250 * 119.99258 * 261.47523 * 5 4 2 7 7 C 1.38200 * 120.02139 * 180.25634 * 6 5 4 8 8 C 1.38379 * 120.01604 * 359.44989 * 7 6 5 9 9 Cl 1.73607 * 120.00510 * 180.25592 * 8 7 6 10 10 C 1.38306 * 119.98619 * 0.27255 * 8 7 6 11 11 C 1.38334 * 119.99339 * 81.18139 * 5 4 2 12 12 Cl 1.73597 * 120.00721 * 0.03800 * 11 5 4 13 13 N 1.46492 * 109.47419 * 120.00217 * 2 1 3 14 14 C 1.34779 * 120.00015 * 273.57421 * 13 2 1 15 15 O 1.21692 * 119.99924 * 359.97438 * 14 13 2 16 16 C 1.46379 * 120.00200 * 180.02562 * 14 13 2 17 17 H 1.07997 * 120.00016 * 359.97438 * 16 14 13 18 18 C 1.40045 * 119.99862 * 180.02562 * 16 14 13 19 19 N 1.30671 * 120.00220 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99936 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47146 * 59.99710 * 20 18 16 22 22 H 1.48499 * 109.47450 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47121 * 299.99980 * 20 18 16 24 24 H 1.08997 * 109.47588 * 59.99647 * 1 2 3 25 25 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46923 * 299.99685 * 1 2 3 27 27 H 1.09003 * 109.46517 * 305.70219 * 4 2 1 28 28 H 1.08997 * 109.46948 * 185.70216 * 4 2 1 29 29 H 1.07998 * 119.98688 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.98616 * 179.72862 * 7 6 5 31 31 H 1.08000 * 120.01139 * 179.97438 * 10 8 7 32 32 H 0.97001 * 120.00620 * 93.57096 * 13 2 1 33 33 H 0.97002 * 120.00161 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6562 0.0661 -2.4757 6 6 0.5414 -0.2962 -3.2086 7 6 0.1920 0.4221 -4.3364 8 6 0.9512 1.5114 -4.7261 9 17 0.5081 2.4176 -6.1390 10 6 2.0633 1.8778 -3.9899 11 6 2.4160 1.1548 -2.8642 12 17 3.8120 1.6137 -1.9400 13 7 2.0184 -0.6906 1.1961 14 6 2.1745 -0.0116 2.3498 15 8 1.9101 1.1753 2.3978 16 6 2.6630 -0.7015 3.5448 17 1 2.8980 -1.7547 3.5021 18 6 2.8246 0.0040 4.7437 19 7 2.5398 1.2783 4.7955 20 14 3.4474 -0.8765 6.2689 21 1 4.7947 -1.4400 5.9997 22 1 3.5301 0.0857 7.3970 23 1 2.5129 -1.9753 6.6224 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5956 -1.7151 -1.3018 28 1 3.1252 -0.8105 -1.1997 29 1 -0.0539 -1.1436 -2.9024 30 1 -0.6765 0.1359 -4.9110 31 1 2.6563 2.7277 -4.2940 32 1 2.2295 -1.6366 1.1578 33 1 2.6521 1.7670 5.6258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153716366.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:23 Heat of formation + Delta-G solvation = -43.052000 kcal Electronic energy + Delta-G solvation = -19383.170776 eV Core-core repulsion = 16073.843405 eV Total energy + Delta-G solvation = -3309.327371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86645 -37.63781 -36.86896 -36.32588 -34.88606 -32.50500 -31.71179 -31.05937 -29.26194 -26.56263 -26.02959 -23.14526 -22.37561 -20.66835 -19.33976 -17.56891 -17.06970 -16.19035 -15.66368 -15.26032 -14.99897 -14.31791 -14.08748 -13.87500 -13.80825 -13.42381 -12.89621 -12.35675 -12.31099 -12.28476 -11.84482 -11.70292 -11.62113 -11.20075 -11.16949 -11.06867 -10.97705 -10.83579 -10.66967 -10.43449 -10.28764 -10.20147 -9.09803 -8.83088 -8.67899 -7.58453 -7.48151 -6.15964 -4.61761 0.82117 0.92561 1.71993 2.23426 3.16658 3.21581 3.23166 3.26858 4.11342 4.47907 4.53257 4.61751 4.72705 4.96244 5.06025 5.23732 5.33960 5.46568 5.49964 5.77788 5.81620 5.86521 5.94642 6.01703 6.11960 6.24808 6.34798 6.42125 6.72362 6.87280 7.45208 7.95920 8.13586 8.35221 9.04760 9.57128 10.63036 10.82234 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.003275 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.875408 B = 8547.932399 C = 8851.538181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.096 4.096 5 C -0.051 4.051 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.033 4.033 9 Cl -0.067 7.067 10 C -0.101 4.101 11 C -0.024 4.024 12 Cl -0.042 7.042 13 N -0.762 5.762 14 C 0.557 3.443 15 O -0.578 6.578 16 C -0.547 4.547 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.379 0.621 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 -3.110 -18.936 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.100 0.900 4 C -0.134 4.134 5 C -0.053 4.053 6 C -0.110 4.110 7 C -0.125 4.125 8 C -0.060 4.060 9 Cl -0.038 7.038 10 C -0.121 4.121 11 C -0.052 4.052 12 Cl -0.013 7.013 13 N -0.416 5.416 14 C 0.361 3.639 15 O -0.461 6.461 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.731 3.269 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.210 0.790 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.639 -1.907 -18.811 19.091 hybrid contribution 0.438 -0.730 0.627 1.057 sum -2.201 -2.638 -18.185 18.506 Atomic orbital electron populations 1.22239 0.97084 1.00923 1.01605 1.20388 0.92844 0.97771 0.83848 0.90002 1.21065 1.02704 0.98358 0.91266 1.19884 0.94111 0.94499 0.96781 1.21030 0.95895 1.00210 0.93880 1.21110 0.99816 0.94207 0.97367 1.20691 0.97509 0.96148 0.91643 1.98374 1.92389 1.74060 1.39022 1.20877 0.96684 1.00568 0.93959 1.20750 0.92688 0.97100 0.94621 1.98430 1.39168 1.91477 1.72220 1.46169 1.73498 1.12006 1.09948 1.18180 0.77668 0.86465 0.81601 1.90602 1.55239 1.15969 1.84249 1.20851 1.47171 0.96511 0.93831 0.91566 1.25691 0.93392 0.94470 0.99617 1.70010 1.35341 1.07791 1.26527 0.86463 0.79862 0.79704 0.80863 1.19331 1.20612 1.19334 0.93350 0.93365 0.91895 0.90325 0.89624 0.84033 0.84461 0.84016 0.79017 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.21 37.16 0.34 -2.40 16 2 C 0.16 2.92 2.61 -67.93 -0.18 2.74 16 3 H 0.08 1.79 6.84 -51.93 -0.35 1.43 16 4 C -0.10 -1.33 4.47 -27.88 -0.12 -1.46 16 5 C -0.05 -0.65 4.48 -104.58 -0.47 -1.12 16 6 C -0.09 -0.95 8.65 -39.59 -0.34 -1.29 16 7 C -0.11 -1.03 9.83 -39.54 -0.39 -1.42 16 8 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 9 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 10 C -0.10 -1.18 9.62 -39.51 -0.38 -1.56 16 11 C -0.02 -0.32 6.31 -39.50 -0.25 -0.57 16 12 Cl -0.04 -0.62 26.77 -51.86 -1.39 -2.01 16 13 N -0.76 -16.49 5.06 -55.21 -0.28 -16.77 16 14 C 0.56 15.59 7.73 -12.98 -0.10 15.49 16 15 O -0.58 -18.50 14.66 5.20 0.08 -18.43 16 16 C -0.55 -15.32 9.54 -35.63 -0.34 -15.66 16 17 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 18 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 19 N -0.77 -23.06 11.83 55.55 0.66 -22.40 16 20 Si 0.91 20.14 29.56 -169.99 -5.02 15.11 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 24 H 0.05 0.72 6.71 -51.93 -0.35 0.37 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 0.91 8.02 -51.93 -0.42 0.50 16 28 H 0.09 1.23 7.30 -51.93 -0.38 0.85 16 29 H 0.14 1.17 8.05 -52.49 -0.42 0.75 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.38 7.14 8.60 -40.82 -0.35 6.79 16 33 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -33.32 316.45 -8.77 -42.10 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.51 Total: 5.27 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.57 Total: -5.48 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.38 Total: -39.17 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.08 Total: -18.43 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.89 Total: -4.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.32 -8.77 -42.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153716366.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.954 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds