Wall clock time and date at job start Tue Mar 31 2020 08:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46649 * 2 1 4 4 H 1.09000 * 109.46813 * 177.76707 * 3 2 1 5 5 C 1.50698 * 109.47547 * 57.77099 * 3 2 1 6 6 H 1.07997 * 120.00012 * 240.00300 * 5 3 2 7 7 C 1.37883 * 120.00028 * 59.99165 * 5 3 2 8 8 N 1.31515 * 119.99842 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00094 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46952 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47173 * 120.00674 * 9 7 5 12 12 H 1.48506 * 109.47054 * 240.00781 * 9 7 5 13 13 N 1.46899 * 109.47043 * 297.76898 * 3 2 1 14 14 C 1.46896 * 111.00013 * 273.70699 * 13 3 2 15 15 C 1.50695 * 109.47293 * 175.74555 * 14 13 3 16 16 C 1.35310 * 126.12222 * 95.03922 * 15 14 13 17 17 C 1.39947 * 107.91321 * 179.97438 * 16 15 14 18 18 Br 1.89101 * 125.90909 * 180.02562 * 17 16 15 19 19 N 1.30888 * 108.18361 * 0.02562 * 17 16 15 20 20 N 1.34957 * 126.11953 * 274.99899 * 15 14 13 21 21 C 1.46496 * 126.02289 * 0.07350 * 20 15 14 22 22 H 1.09004 * 109.46726 * 174.19162 * 1 2 3 23 23 H 1.08999 * 109.47527 * 294.18915 * 1 2 3 24 24 H 1.08994 * 109.47360 * 54.19399 * 1 2 3 25 25 H 1.08994 * 109.47127 * 239.99820 * 2 1 3 26 26 H 1.08997 * 109.47065 * 119.99222 * 2 1 3 27 27 H 0.97001 * 119.99956 * 179.97438 * 8 7 5 28 28 H 1.00898 * 110.99898 * 149.75544 * 13 3 2 29 29 H 1.09000 * 109.47559 * 55.73971 * 14 13 3 30 30 H 1.09001 * 109.47258 * 295.74604 * 14 13 3 31 31 H 1.07996 * 126.04176 * 359.95067 * 16 15 14 32 32 H 1.09006 * 109.46748 * 269.97489 * 21 20 15 33 33 H 1.08994 * 109.48085 * 29.97790 * 21 20 15 34 34 H 1.09001 * 109.46933 * 149.98212 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1292 1.4428 0.0400 5 6 1.4930 2.1688 1.2019 6 1 0.8762 3.0453 1.0686 7 6 1.7797 1.7140 2.4716 8 7 2.5309 0.6468 2.6338 9 14 1.1011 2.6138 3.9613 10 1 0.2910 3.7744 3.5120 11 1 0.2471 1.6904 4.7507 12 1 2.2256 3.0917 4.8055 13 7 1.5947 2.1192 -1.2255 14 6 2.5360 1.8840 -2.3284 15 6 1.9953 2.5037 -3.5911 16 6 2.2981 3.7326 -4.0696 17 6 1.5859 3.9186 -5.2598 18 35 1.6341 5.4619 -6.3516 19 7 0.8806 2.8396 -5.4867 20 7 1.1230 1.9320 -4.4476 21 6 0.5324 0.5981 -4.3132 22 1 -0.3633 -1.0224 -0.1040 23 1 -0.3634 0.4211 0.9374 24 1 -0.3634 0.6012 -0.8334 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.7330 0.3271 3.5270 28 1 1.4641 3.1070 -1.0661 29 1 2.6628 0.8114 -2.4754 30 1 3.4990 2.3337 -2.0864 31 1 2.9702 4.4443 -3.6134 32 1 1.1693 -0.1331 -4.8111 33 1 0.4447 0.3441 -3.2569 34 1 -0.4564 0.5907 -4.7719 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309199424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:45 Heat of formation + Delta-G solvation = 57.205560 kcal Electronic energy + Delta-G solvation = -17021.627661 eV Core-core repulsion = 14229.636779 eV Total energy + Delta-G solvation = -2791.990882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 301.049 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -42.34818 -38.14684 -35.04516 -34.32991 -32.93912 -31.93446 -31.07107 -28.40581 -27.32148 -25.89173 -24.91267 -21.94011 -21.13860 -20.70298 -18.57505 -17.56423 -16.89990 -16.60949 -15.97134 -15.51021 -15.15099 -14.94612 -14.84090 -14.23406 -13.93461 -13.88143 -13.69113 -13.24218 -12.97965 -12.81327 -12.55672 -12.39167 -12.15307 -11.99858 -11.90200 -11.61114 -11.31062 -11.28584 -10.77588 -10.52675 -10.18408 -9.63664 -9.07102 -8.08290 -6.18690 0.12383 0.63889 1.41661 1.44616 1.46690 1.55225 1.75811 2.44646 3.22055 3.42601 3.74475 3.84037 4.24483 4.41569 4.51760 4.53763 4.61194 4.67812 4.72947 4.84901 4.93090 4.99221 5.27554 5.32768 5.39604 5.59286 5.73833 5.85016 5.90220 5.92612 6.30880 6.40577 6.45055 6.74881 7.01286 7.49909 8.96688 Molecular weight = 301.05amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.003631 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.712753 B = 7708.678787 C = 8420.936974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.024 1.024 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.674 5.674 14 C 0.123 3.877 15 C 0.114 3.886 16 C -0.255 4.255 17 C 0.058 3.942 18 Br 0.042 6.958 19 N -0.293 5.293 20 N -0.347 5.347 21 C 0.091 3.909 22 H 0.035 0.965 23 H 0.026 0.974 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.260 0.740 28 H 0.336 0.664 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.166 0.834 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 4.505 -16.462 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C 0.115 3.885 4 H -0.007 1.007 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.553 5.553 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.306 5.306 14 C -0.008 4.008 15 C -0.016 4.016 16 C -0.287 4.287 17 C -0.185 4.185 18 Br 0.123 6.877 19 N -0.119 5.119 20 N -0.131 5.131 21 C -0.049 4.049 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.153 0.847 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.179 3.700 -17.670 18.184 hybrid contribution 1.063 0.928 2.051 2.490 sum -1.116 4.628 -15.619 16.328 Atomic orbital electron populations 1.21315 0.96225 0.98477 1.00530 1.21316 0.96059 0.97399 0.98872 1.18940 0.91698 0.92241 0.85579 1.00689 1.21446 1.31303 1.11910 0.91324 0.92705 1.25498 0.95389 0.95638 1.01194 1.70001 1.38426 1.24221 1.22641 0.85670 0.78113 0.78804 0.80011 1.19392 1.21028 1.20996 1.60623 1.46910 1.16700 1.06335 1.20475 0.93983 1.00432 0.85881 1.21213 0.93023 0.93728 0.93657 1.21302 1.10328 0.98790 0.98255 1.23946 1.01384 0.95218 0.97958 1.96689 1.98160 1.27189 1.65698 1.77342 1.23395 1.00088 1.11094 1.48692 1.33579 1.14543 1.16279 1.22245 1.00299 0.77165 1.05158 0.94560 0.95471 0.92716 0.95160 0.92542 0.93075 0.84701 0.89579 0.92584 0.81691 0.88713 0.88164 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 9.45 71.98 0.68 -3.64 16 2 C -0.10 -4.25 5.58 30.60 0.17 -4.08 16 3 C 0.22 10.10 2.30 44.17 0.10 10.20 16 4 H -0.02 -1.23 7.83 -2.39 -0.02 -1.25 16 5 C -0.52 -26.32 7.33 25.60 0.19 -26.14 16 6 H 0.05 2.78 7.60 -2.91 -0.02 2.76 16 7 C 0.02 1.16 5.30 84.66 0.45 1.61 16 8 N -0.91 -49.66 11.34 21.45 0.24 -49.42 16 9 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 N -0.67 -24.89 5.51 -499.48 -2.75 -27.64 16 14 C 0.12 3.79 5.38 85.56 0.46 4.25 16 15 C 0.11 3.35 6.48 41.40 0.27 3.62 16 16 C -0.26 -7.34 10.70 22.01 0.24 -7.10 16 17 C 0.06 1.68 7.71 85.25 0.66 2.34 16 18 Br 0.04 0.97 34.11 -20.37 -0.69 0.27 16 19 N -0.29 -9.10 12.58 -52.94 -0.67 -9.77 16 20 N -0.35 -9.95 4.01 -356.04 -1.43 -11.38 16 21 C 0.09 1.98 11.16 127.77 1.43 3.40 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.03 1.20 7.38 -2.39 -0.02 1.18 16 24 H 0.05 2.06 7.50 -2.39 -0.02 2.04 16 25 H 0.03 1.16 7.44 -2.39 -0.02 1.14 16 26 H 0.06 2.84 6.13 -2.39 -0.01 2.82 16 27 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 28 H 0.34 12.74 8.23 -89.70 -0.74 12.00 16 29 H 0.09 2.54 7.25 -2.39 -0.02 2.53 16 30 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 31 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.10 2.30 7.78 -2.39 -0.02 2.29 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -56.87 305.88 1.73 -55.13 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.37 Total: 14.43 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.64 Total: -15.54 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.60 Total: -98.20 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 35 Polarization: 0.97 SS G_CDS: -0.69 Total: 0.27 kcal Total: -56.87 1.73 -55.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309199424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.338 kcal (2) G-P(sol) polarization free energy of solvation -56.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds