Wall clock time and date at job start Tue Mar 31 2020 07:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99697 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99516 * 4 3 2 6 6 C 1.46504 * 120.00381 * 269.99975 * 5 4 3 7 7 C 1.50704 * 109.46773 * 90.00257 * 6 5 4 8 8 H 1.07998 * 119.99721 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99850 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99692 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99728 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47540 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46847 * 120.00345 * 11 9 7 14 14 H 1.48508 * 109.47264 * 239.99931 * 11 9 7 15 15 C 1.37946 * 119.99901 * 90.00668 * 5 4 3 16 16 N 1.30131 * 124.71539 * 0.02562 * 15 5 4 17 17 C 1.31115 * 117.24737 * 180.02562 * 16 15 5 18 18 Cl 1.73595 * 123.02272 * 180.02562 * 17 16 15 19 19 C 1.36836 * 113.95533 * 0.02562 * 17 16 15 20 20 C 1.43198 * 126.11056 * 179.97438 * 19 17 16 21 21 N 7.11620 * 119.23499 * 152.71592 * 2 1 3 22 22 S 1.70907 * 124.71897 * 179.72633 * 15 5 4 23 23 H 1.08998 * 109.47394 * 60.00226 * 1 2 3 24 24 H 1.08995 * 109.46929 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46836 * 299.99784 * 1 2 3 26 26 H 1.08990 * 109.47416 * 60.00374 * 3 2 1 27 27 H 1.09001 * 109.47100 * 300.00056 * 3 2 1 28 28 H 1.09002 * 109.47398 * 54.99843 * 4 3 2 29 29 H 1.09001 * 109.47194 * 175.00023 * 4 3 2 30 30 H 1.08992 * 109.47334 * 209.99920 * 6 5 4 31 31 H 1.08994 * 109.46680 * 330.00544 * 6 5 4 32 32 H 0.96996 * 119.99637 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5642 1.2509 6 6 4.2882 1.4000 2.4131 7 6 3.0440 1.5927 3.2413 8 1 2.1143 1.1377 2.9330 9 6 3.0926 2.3500 4.3925 10 7 4.2247 2.9044 4.7675 11 14 1.5502 2.5894 5.4186 12 1 0.4172 1.8682 4.7851 13 1 1.7763 2.0527 6.7847 14 1 1.2312 4.0374 5.5023 15 6 4.0988 -0.8073 1.3352 16 7 3.8476 -1.6348 0.3628 17 6 4.0126 -2.9129 0.6045 18 17 3.7220 -4.1455 -0.5829 19 6 4.4347 -3.1878 1.8768 20 6 4.6953 -4.4881 2.4170 21 7 4.9045 -5.5189 2.8466 22 16 4.6080 -1.6554 2.7288 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5686 -0.8427 29 1 3.9785 2.1766 -0.0902 30 1 5.0542 0.9127 3.0162 31 1 4.6538 2.3697 2.0755 32 1 4.2588 3.4374 5.5772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310482406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:13 Heat of formation + Delta-G solvation = 29.079175 kcal Electronic energy + Delta-G solvation = -19896.994019 eV Core-core repulsion = 16625.130947 eV Total energy + Delta-G solvation = -3271.863071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.039 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51866 -37.80993 -36.66438 -36.18759 -35.74542 -32.96160 -30.29790 -29.57934 -27.38038 -26.11824 -24.64924 -23.07857 -21.90394 -20.59832 -18.51930 -17.33253 -16.84711 -16.24930 -15.74742 -15.23969 -15.15455 -14.81486 -14.65495 -14.42029 -13.58047 -13.22923 -12.86425 -12.72155 -12.64644 -12.25169 -12.18083 -11.92369 -11.56895 -11.51124 -11.42983 -11.08431 -10.96382 -10.82390 -10.64879 -10.33595 -9.99483 -9.37342 -9.29152 -9.18742 -8.83969 -8.74434 -7.11961 -6.36067 -4.47163 0.80936 1.25740 1.59442 2.31217 2.89935 3.11140 3.21265 3.22853 3.29660 3.51327 3.65132 4.17521 4.18477 4.41401 4.95154 5.12207 5.39708 5.49044 5.50916 5.62432 5.67235 5.77163 5.83377 5.93075 6.27206 6.50837 6.77150 7.14546 7.55628 7.57482 7.59144 7.74470 7.79636 8.08615 8.60789 9.21899 10.68538 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.005934 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.143600 B = 4717.753052 C = 5710.553338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.041 3.959 4 C 0.131 3.869 5 N -0.531 5.531 6 C 0.240 3.760 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.898 3.102 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.282 1.282 15 C 0.365 3.635 16 N -0.549 5.549 17 C 0.258 3.742 18 Cl -0.012 7.012 19 C -0.293 4.293 20 C 0.312 3.688 21 N -0.437 5.437 22 S 0.226 5.774 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 -2.512 -8.856 9.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.286 6.286 3 C -0.037 4.037 4 C 0.006 3.994 5 N -0.242 5.242 6 C 0.121 3.879 7 C -0.582 4.582 8 H 0.087 0.913 9 C -0.135 4.135 10 N -0.524 5.524 11 Si 0.725 3.275 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.207 1.207 15 C -0.004 4.004 16 N -0.275 5.275 17 C 0.084 3.916 18 Cl 0.016 6.984 19 C -0.423 4.423 20 C -0.003 4.003 21 N -0.116 5.116 22 S 0.477 5.523 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.370 -3.341 -7.599 8.413 hybrid contribution -1.499 0.264 -0.345 1.561 sum -2.869 -3.077 -7.944 8.989 Atomic orbital electron populations 1.22633 0.82389 1.01992 0.99237 1.88058 1.18290 1.26987 1.95236 1.23055 0.94339 0.85571 1.00714 1.21574 0.92737 0.98796 0.86333 1.46939 1.63420 0.99104 1.14699 1.19792 0.97274 0.90015 0.80814 1.21457 0.95629 1.33077 1.08047 0.91326 1.24920 0.96558 0.94893 0.97082 1.69907 1.25253 1.32714 1.24552 0.86435 0.82802 0.78025 0.80278 1.19549 1.20533 1.20744 1.23249 0.93963 0.90825 0.92326 1.65621 1.30022 0.99924 1.31922 1.20371 0.95914 0.88274 0.87047 1.98382 1.94242 1.48628 1.57100 1.20736 1.30278 0.93303 0.97947 1.23809 0.92342 0.90953 0.93196 1.81207 1.11956 1.10430 1.08026 1.84526 1.64979 0.91192 1.11631 0.94918 0.90355 0.94456 0.91305 0.93501 0.89433 0.88749 0.94089 0.92877 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.16 9.67 -35.23 -0.34 -6.50 16 3 C 0.04 0.63 6.28 37.16 0.23 0.86 16 4 C 0.13 1.97 5.99 -4.04 -0.02 1.95 16 5 N -0.53 -9.57 2.52 -177.51 -0.45 -10.02 16 6 C 0.24 4.95 5.16 -5.19 -0.03 4.93 16 7 C -0.54 -12.58 8.82 -34.44 -0.30 -12.89 16 8 H 0.07 1.65 7.24 -52.49 -0.38 1.27 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -22.52 13.29 55.43 0.74 -21.78 16 11 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 C 0.37 6.63 7.29 -87.96 -0.64 5.99 16 16 N -0.55 -9.78 9.17 -11.82 -0.11 -9.89 16 17 C 0.26 4.38 7.41 -18.37 -0.14 4.25 16 18 Cl -0.01 -0.18 28.82 -51.86 -1.49 -1.67 16 19 C -0.29 -4.98 6.39 -38.17 -0.24 -5.22 16 20 C 0.31 5.37 15.43 -22.47 -0.35 5.03 16 21 N -0.44 -7.90 18.54 41.84 0.78 -7.13 16 22 S 0.23 3.94 21.60 -107.50 -2.32 1.61 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.17 6.95 -51.93 -0.36 0.81 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.29 7.59 -51.93 -0.39 0.89 16 29 H 0.09 1.22 7.89 -51.93 -0.41 0.81 16 30 H 0.04 0.90 7.01 -51.93 -0.36 0.53 16 31 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -25.93 319.14 -7.03 -32.96 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: -3.14 Total: -4.71 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.47 Total: 8.07 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.96 Total: -48.82 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.34 Total: -6.50 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.32 Total: 1.61 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.49 Total: -1.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.93 -7.03 -32.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310482406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.041 kcal (2) G-P(sol) polarization free energy of solvation -25.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds