Wall clock time and date at job start Tue Mar 31 2020 08:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86798 * 120.00252 * 2 1 4 4 H 1.48505 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47196 * 300.00211 * 3 2 1 6 6 H 1.48501 * 109.46958 * 60.00234 * 3 2 1 7 7 C 1.39929 * 119.99504 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99981 * 196.79515 * 7 2 1 9 9 C 1.41408 * 120.00379 * 16.79193 * 7 2 1 10 10 C 1.40783 * 120.21252 * 205.13916 * 9 7 2 11 11 C 1.37643 * 119.88917 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32276 * 359.72761 * 11 10 9 13 13 C 1.39263 * 120.42829 * 0.54753 * 12 11 10 14 14 N 1.39864 * 119.94764 * 179.72113 * 13 12 11 15 15 C 1.34767 * 120.00416 * 325.54287 * 14 13 12 16 16 O 1.21580 * 119.99717 * 354.89060 * 15 14 13 17 17 C 1.47736 * 120.00526 * 174.61066 * 15 14 13 18 18 C 1.39647 * 120.15435 * 0.27846 * 17 15 14 19 19 C 1.37883 * 119.86651 * 179.97438 * 18 17 15 20 20 C 1.38424 * 120.18591 * 359.97438 * 19 18 17 21 21 C 1.38274 * 120.31842 * 0.02687 * 20 19 18 22 22 C 1.38149 * 120.13000 * 359.69092 * 21 20 19 23 23 Cl 1.73600 * 120.09476 * 180.28253 * 22 21 20 24 24 C 1.38296 * 120.10079 * 359.45378 * 13 12 11 25 25 H 0.97000 * 119.99291 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.05304 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.83521 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.78129 * 180.27740 * 12 11 10 29 29 H 0.97003 * 119.99518 * 145.54244 * 14 13 12 30 30 H 1.08002 * 120.06407 * 359.97438 * 18 17 15 31 31 H 1.08001 * 119.91180 * 179.97438 * 19 18 17 32 32 H 1.08007 * 119.84190 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.93830 * 179.97438 * 21 20 19 34 34 H 1.08003 * 120.16489 * 180.24769 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2697 9 6 1.3460 -2.4102 -0.3549 10 6 1.8186 -3.6480 0.1213 11 6 1.1696 -4.8104 -0.2282 12 6 0.0494 -4.7684 -1.0421 13 6 -0.4262 -3.5519 -1.5253 14 7 -1.5546 -3.5217 -2.3511 15 6 -1.7789 -4.5250 -3.2225 16 8 -0.9548 -5.4086 -3.3575 17 6 -3.0290 -4.5544 -4.0093 18 6 -3.9779 -3.5412 -3.8568 19 6 -5.1423 -3.5743 -4.5945 20 6 -5.3726 -4.6084 -5.4855 21 6 -4.4384 -5.6156 -5.6425 22 6 -3.2646 -5.5923 -4.9144 23 17 -2.0890 -6.8534 -5.1176 24 6 0.2123 -2.3732 -1.1852 25 1 -0.4849 0.8401 0.0004 26 1 2.6894 -3.6854 0.7590 27 1 1.5326 -5.7594 0.1378 28 1 -0.4557 -5.6854 -1.3072 29 1 -2.1757 -2.7786 -2.2966 30 1 -3.8000 -2.7334 -3.1625 31 1 -5.8768 -2.7914 -4.4768 32 1 -6.2869 -4.6290 -6.0602 33 1 -4.6245 -6.4196 -6.3391 34 1 -0.1580 -1.4289 -1.5561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313442901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:22 Heat of formation + Delta-G solvation = 12.266678 kcal Electronic energy + Delta-G solvation = -20748.994792 eV Core-core repulsion = 17444.499068 eV Total energy + Delta-G solvation = -3304.495724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.061 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.22905 -38.63006 -37.04494 -36.32638 -34.30554 -33.34727 -31.54127 -30.85538 -29.52937 -28.26996 -25.25791 -24.13963 -22.81248 -21.38078 -21.02734 -19.64745 -18.13830 -17.40761 -16.41108 -15.95638 -15.46049 -14.94570 -14.84490 -14.71328 -14.47529 -14.16370 -13.65829 -13.36883 -12.91691 -12.75332 -12.34048 -12.06036 -11.70613 -11.61920 -11.51038 -11.26359 -11.13450 -11.03449 -10.73106 -10.56072 -9.95226 -9.72862 -9.37520 -9.27171 -9.15637 -8.89110 -8.87448 -7.37859 -7.01616 -6.69890 -4.37355 0.62218 0.97523 2.17085 2.63064 2.84117 3.06924 3.12431 3.13815 3.24701 3.56742 3.80940 3.93226 4.51255 4.60193 4.65379 4.76650 5.04119 5.12648 5.33447 5.54156 5.68004 5.91891 5.93788 6.10428 6.28494 6.46251 6.64594 6.68414 6.88834 7.04927 7.06730 7.24988 7.60724 7.67990 7.93204 8.02963 8.14672 8.31410 8.54384 8.73477 8.88708 8.95453 10.18414 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003902 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.396725 B = 7174.000895 C = 8237.106319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.226 4.226 11 C -0.086 4.086 12 C -0.224 4.224 13 C 0.146 3.854 14 N -0.658 5.658 15 C 0.541 3.459 16 O -0.498 6.498 17 C -0.121 4.121 18 C -0.076 4.076 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.124 4.124 22 C 0.012 3.988 23 Cl -0.031 7.031 24 C -0.181 4.181 25 H 0.278 0.722 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.400 0.600 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -4.133 -9.426 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.246 4.246 11 C -0.105 4.105 12 C -0.245 4.245 13 C 0.054 3.946 14 N -0.302 5.302 15 C 0.328 3.672 16 O -0.373 6.373 17 C -0.125 4.125 18 C -0.095 4.095 19 C -0.143 4.143 20 C -0.108 4.108 21 C -0.142 4.142 22 C -0.016 4.016 23 Cl -0.001 7.001 24 C -0.202 4.202 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.235 0.765 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.737 -4.743 -9.531 15.846 hybrid contribution -0.008 1.154 0.052 1.155 sum -11.745 -3.589 -9.478 15.514 Atomic orbital electron populations 1.69825 1.07534 1.28841 1.36461 1.25865 0.94735 1.01194 0.92176 0.86291 0.81097 0.81046 0.78462 1.18410 1.19803 1.20044 1.19570 0.97816 0.90986 1.40920 0.90324 1.17359 0.90556 0.92176 0.88198 1.21054 1.03803 0.92895 1.06881 1.20417 0.95600 0.96622 0.97830 1.20307 1.01981 0.95563 1.06672 1.17566 0.88265 0.95145 0.93577 1.43371 1.25761 1.23685 1.37401 1.18080 0.85957 0.83057 0.80149 1.90876 1.45250 1.36310 1.64880 1.19984 0.96715 0.96315 0.99462 1.21409 0.92905 0.96924 0.98262 1.21194 0.97435 0.99075 0.96598 1.21291 0.98764 0.93299 0.97408 1.21070 0.92524 1.00326 1.00317 1.21077 0.92158 0.91541 0.96861 1.98424 1.56792 1.49028 1.95899 1.21071 0.99922 0.95300 1.03951 0.91139 0.88844 0.89009 0.88007 0.76473 0.84538 0.84793 0.84802 0.84475 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.96 10.94 55.55 0.61 -19.35 16 2 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 3 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.20 9.05 -37.74 -0.34 -12.54 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.12 3.20 5.57 -106.85 -0.59 2.60 16 10 C -0.23 -5.66 9.79 -38.84 -0.38 -6.04 16 11 C -0.09 -2.03 10.02 -39.69 -0.40 -2.43 16 12 C -0.22 -5.39 8.66 -39.10 -0.34 -5.73 16 13 C 0.15 3.45 6.25 -83.79 -0.52 2.92 16 14 N -0.66 -12.70 5.28 -10.80 -0.06 -12.75 16 15 C 0.54 10.19 7.49 -12.38 -0.09 10.10 16 16 O -0.50 -10.86 11.71 5.30 0.06 -10.80 16 17 C -0.12 -1.78 5.88 -104.94 -0.62 -2.40 16 18 C -0.08 -0.87 9.54 -39.19 -0.37 -1.24 16 19 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 20 C -0.09 -0.75 10.04 -39.50 -0.40 -1.15 16 21 C -0.12 -1.27 9.82 -39.60 -0.39 -1.66 16 22 C 0.01 0.16 6.35 -39.06 -0.25 -0.09 16 23 Cl -0.03 -0.47 26.02 -51.86 -1.35 -1.82 16 24 C -0.18 -4.61 8.60 -38.68 -0.33 -4.95 16 25 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 26 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 27 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.10 2.43 6.47 -52.49 -0.34 2.09 16 29 H 0.40 6.48 6.87 -40.82 -0.28 6.20 16 30 H 0.14 1.36 6.42 -52.49 -0.34 1.02 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 3.14 6.17 -52.48 -0.32 2.81 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -30.20 309.51 -9.56 -39.76 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -2.94 Total: 9.22 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -5.51 Total: -22.31 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.55 Total: -32.11 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.06 Total: -10.80 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.35 Total: -1.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.20 -9.56 -39.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.022 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds