Wall clock time and date at job start Tue Mar 31 2020 08:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86798 * 120.00252 * 2 1 4 4 H 1.48505 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47196 * 300.00211 * 3 2 1 6 6 H 1.48501 * 109.46958 * 60.00234 * 3 2 1 7 7 C 1.39929 * 119.99504 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99981 * 196.79515 * 7 2 1 9 9 C 1.41408 * 120.00379 * 16.79193 * 7 2 1 10 10 C 1.40783 * 120.21252 * 205.13916 * 9 7 2 11 11 C 1.37643 * 119.88917 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32276 * 359.72761 * 11 10 9 13 13 C 1.39263 * 120.42829 * 0.54753 * 12 11 10 14 14 N 1.39864 * 119.94764 * 179.72113 * 13 12 11 15 15 C 1.34767 * 120.00416 * 325.54287 * 14 13 12 16 16 O 1.21580 * 119.99717 * 354.89060 * 15 14 13 17 17 C 1.47736 * 120.00526 * 174.61066 * 15 14 13 18 18 C 1.39647 * 120.15435 * 0.27846 * 17 15 14 19 19 C 1.37883 * 119.86651 * 179.97438 * 18 17 15 20 20 C 1.38424 * 120.18591 * 359.97438 * 19 18 17 21 21 C 1.38274 * 120.31842 * 0.02687 * 20 19 18 22 22 C 1.38149 * 120.13000 * 359.69092 * 21 20 19 23 23 Cl 1.73600 * 120.09476 * 180.28253 * 22 21 20 24 24 C 1.38296 * 120.10079 * 359.45378 * 13 12 11 25 25 H 0.97000 * 119.99291 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.05304 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.83521 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.78129 * 180.27740 * 12 11 10 29 29 H 0.97003 * 119.99518 * 145.54244 * 14 13 12 30 30 H 1.08002 * 120.06407 * 359.97438 * 18 17 15 31 31 H 1.08001 * 119.91180 * 179.97438 * 19 18 17 32 32 H 1.08007 * 119.84190 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.93830 * 179.97438 * 21 20 19 34 34 H 1.08003 * 120.16489 * 180.24769 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2697 9 6 1.3460 -2.4102 -0.3549 10 6 1.8186 -3.6480 0.1213 11 6 1.1696 -4.8104 -0.2282 12 6 0.0494 -4.7684 -1.0421 13 6 -0.4262 -3.5519 -1.5253 14 7 -1.5546 -3.5217 -2.3511 15 6 -1.7789 -4.5250 -3.2225 16 8 -0.9548 -5.4086 -3.3575 17 6 -3.0290 -4.5544 -4.0093 18 6 -3.9779 -3.5412 -3.8568 19 6 -5.1423 -3.5743 -4.5945 20 6 -5.3726 -4.6084 -5.4855 21 6 -4.4384 -5.6156 -5.6425 22 6 -3.2646 -5.5923 -4.9144 23 17 -2.0890 -6.8534 -5.1176 24 6 0.2123 -2.3732 -1.1852 25 1 -0.4849 0.8401 0.0004 26 1 2.6894 -3.6854 0.7590 27 1 1.5326 -5.7594 0.1378 28 1 -0.4557 -5.6854 -1.3072 29 1 -2.1757 -2.7786 -2.2966 30 1 -3.8000 -2.7334 -3.1625 31 1 -5.8768 -2.7914 -4.4768 32 1 -6.2869 -4.6290 -6.0602 33 1 -4.6245 -6.4196 -6.3391 34 1 -0.1580 -1.4289 -1.5561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313442901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:16 Heat of formation + Delta-G solvation = -3.967387 kcal Electronic energy + Delta-G solvation = -20749.698754 eV Core-core repulsion = 17444.499068 eV Total energy + Delta-G solvation = -3305.199686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.061 amu Computer time = 7.27 seconds Orbital eigenvalues (eV) -41.55773 -39.86938 -38.72821 -37.37816 -36.01867 -35.14430 -32.60742 -31.71554 -31.44158 -29.97500 -27.18837 -25.29822 -23.72786 -23.14803 -22.54821 -21.26017 -19.37803 -19.21644 -17.63869 -17.36476 -16.84421 -16.54350 -16.18742 -16.10984 -15.93727 -15.14540 -15.00502 -14.80362 -14.45890 -14.23512 -14.10049 -13.48338 -13.11669 -12.86572 -12.81740 -12.62899 -12.52770 -12.48963 -12.32990 -12.09179 -11.73110 -11.58253 -11.14805 -10.89421 -10.47191 -10.14651 -9.80163 -9.33705 -8.86198 -8.55041 -6.35661 -0.35310 0.15446 0.88523 1.04212 1.16791 1.40967 1.50794 1.55425 1.88844 2.14520 2.23128 2.67051 2.79153 3.55424 3.67163 3.73700 4.00272 4.26858 4.28810 4.41808 4.50694 4.71557 4.77406 4.83664 5.04692 5.10589 5.14395 5.20185 5.21941 5.33542 5.36148 5.72591 5.77366 5.84325 6.02344 6.08141 6.32546 6.54840 6.70854 6.93625 6.96975 7.21702 8.34755 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003902 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.396725 B = 7174.000895 C = 8237.106319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.093 3.907 10 C -0.248 4.248 11 C -0.084 4.084 12 C -0.239 4.239 13 C 0.153 3.847 14 N -0.656 5.656 15 C 0.538 3.462 16 O -0.536 6.536 17 C -0.151 4.151 18 C -0.079 4.079 19 C -0.115 4.115 20 C -0.068 4.068 21 C -0.122 4.122 22 C -0.008 4.008 23 Cl -0.059 7.059 24 C -0.202 4.202 25 H 0.289 0.711 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.413 0.587 30 H 0.146 0.854 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.160 0.840 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 -2.780 -10.615 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.268 4.268 11 C -0.103 4.103 12 C -0.260 4.260 13 C 0.060 3.940 14 N -0.301 5.301 15 C 0.328 3.672 16 O -0.413 6.413 17 C -0.155 4.155 18 C -0.098 4.098 19 C -0.133 4.133 20 C -0.086 4.086 21 C -0.141 4.141 22 C -0.036 4.036 23 Cl -0.030 7.030 24 C -0.223 4.223 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.251 0.749 30 H 0.163 0.837 31 H 0.189 0.811 32 H 0.196 0.804 33 H 0.178 0.822 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.309 -3.393 -10.727 18.203 hybrid contribution 0.601 0.713 0.362 1.000 sum -13.709 -2.680 -10.365 17.394 Atomic orbital electron populations 1.69850 1.08759 1.30488 1.35611 1.26682 0.95584 1.04190 0.91112 0.85177 0.79338 0.76303 0.78998 1.18584 1.18804 1.18896 1.19815 0.98009 0.92205 1.42752 0.90649 1.17757 0.91343 0.93099 0.88756 1.21221 1.04649 0.93034 1.07848 1.20715 0.95083 0.97425 0.97034 1.20458 1.02549 0.95739 1.07251 1.17628 0.88914 0.94406 0.93067 1.43326 1.24896 1.24729 1.37165 1.18782 0.87012 0.81814 0.79622 1.90841 1.46939 1.37475 1.66033 1.19744 0.95958 0.98852 1.00933 1.21621 0.93187 0.96120 0.98838 1.21658 0.96658 0.99863 0.95097 1.21849 0.99215 0.91412 0.96164 1.21420 0.91296 1.01584 0.99790 1.21344 0.93072 0.91036 0.98119 1.98407 1.58256 1.50231 1.96057 1.21018 1.00646 0.95577 1.05098 0.89998 0.88032 0.86366 0.88091 0.74891 0.83662 0.81065 0.80405 0.82235 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.16 10.94 21.82 0.24 -40.92 16 2 C 0.04 1.95 5.16 85.25 0.44 2.39 16 3 Si 0.98 37.52 29.59 68.60 2.03 39.55 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 7 C -0.50 -26.99 9.05 23.46 0.21 -26.78 16 8 H 0.08 3.97 7.90 -2.91 -0.02 3.95 16 9 C 0.09 5.15 5.57 -21.31 -0.12 5.04 16 10 C -0.25 -12.78 9.79 22.75 0.22 -12.56 16 11 C -0.08 -4.05 10.02 22.20 0.22 -3.83 16 12 C -0.24 -11.83 8.66 22.58 0.20 -11.64 16 13 C 0.15 7.45 6.25 38.12 0.24 7.69 16 14 N -0.66 -25.94 5.28 -306.34 -1.62 -27.55 16 15 C 0.54 20.81 7.49 86.76 0.65 21.46 16 16 O -0.54 -24.29 11.71 -3.97 -0.05 -24.34 16 17 C -0.15 -4.40 5.88 -20.07 -0.12 -4.51 16 18 C -0.08 -1.64 9.54 22.53 0.21 -1.42 16 19 C -0.12 -1.53 10.03 22.23 0.22 -1.31 16 20 C -0.07 -0.81 10.04 22.32 0.22 -0.58 16 21 C -0.12 -2.14 9.82 22.26 0.22 -1.92 16 22 C -0.01 -0.21 6.35 22.60 0.14 -0.07 16 23 Cl -0.06 -1.84 26.02 -2.72 -0.07 -1.91 16 24 C -0.20 -10.65 8.60 22.85 0.20 -10.46 16 25 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 26 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 27 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 28 H 0.10 4.98 6.47 -2.91 -0.02 4.96 16 29 H 0.41 13.58 6.87 -92.71 -0.64 12.94 16 30 H 0.15 2.64 6.42 -2.91 -0.02 2.62 16 31 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 33 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.12 6.10 6.17 -2.91 -0.02 6.09 16 Total: -1.00 -68.89 309.51 4.22 -64.67 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.52 Total: 29.00 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 3.16 Total: -38.51 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.38 Total: -68.47 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -68.89 4.22 -64.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.708 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.27 seconds