Wall clock time and date at job start Tue Mar 31 2020 07:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47064 * 2 1 4 4 C 1.36881 * 119.99705 * 96.67531 * 3 2 1 5 5 H 1.08005 * 120.00284 * 160.39945 * 4 3 2 6 6 C 1.39038 * 120.00129 * 340.40104 * 4 3 2 7 7 N 1.31362 * 120.00205 * 357.58173 * 6 4 3 8 8 Si 1.86810 * 120.00033 * 177.58025 * 6 4 3 9 9 H 1.48493 * 109.46998 * 60.00147 * 8 6 4 10 10 H 1.48494 * 109.47008 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46835 * 299.99947 * 8 6 4 12 12 C 1.34774 * 120.00414 * 276.67865 * 3 2 1 13 13 O 1.21599 * 120.00031 * 184.31398 * 12 3 2 14 14 C 1.47663 * 119.99811 * 4.32067 * 12 3 2 15 15 C 1.39700 * 120.15027 * 304.94904 * 14 12 3 16 16 C 1.37886 * 119.88164 * 179.74687 * 15 14 12 17 17 C 1.38423 * 120.19777 * 0.25269 * 16 15 14 18 18 C 1.50705 * 119.83845 * 180.02562 * 17 16 15 19 19 C 1.38386 * 120.32142 * 359.97438 * 17 16 15 20 20 Cl 1.73593 * 119.94623 * 180.02562 * 19 17 16 21 21 C 1.38255 * 120.10822 * 0.02562 * 19 17 16 22 22 Cl 1.73600 * 120.09992 * 180.02562 * 21 19 17 23 23 H 1.09011 * 109.47113 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47240 * 299.99295 * 1 2 3 25 25 H 1.08999 * 109.47316 * 59.99748 * 1 2 3 26 26 H 1.09003 * 109.46820 * 240.00453 * 2 1 3 27 27 H 1.08999 * 109.47316 * 120.00252 * 2 1 3 28 28 H 0.97005 * 120.00218 * 179.97438 * 7 6 4 29 29 H 1.08003 * 120.06177 * 0.02562 * 15 14 12 30 30 H 1.07994 * 119.89539 * 180.23033 * 16 15 14 31 31 H 1.08995 * 109.46987 * 89.99709 * 18 17 16 32 32 H 1.08998 * 109.46968 * 210.00247 * 18 17 16 33 33 H 1.08999 * 109.46678 * 329.99306 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3763 1.9805 1.1774 5 1 3.0175 2.8496 1.1680 6 6 1.9147 1.4704 2.3857 7 7 1.0968 0.4425 2.3951 8 14 2.4575 2.2468 3.9957 9 1 2.0388 3.6712 4.0243 10 1 1.8301 1.5231 5.1305 11 1 3.9355 2.1628 4.1122 12 6 2.1150 2.0619 -1.1592 13 8 2.5935 3.1797 -1.1698 14 6 1.6397 1.4502 -2.4164 15 6 2.1269 0.2042 -2.8185 16 6 1.6754 -0.3643 -3.9907 17 6 0.7450 0.2984 -4.7726 18 6 0.2566 -0.3307 -6.0521 19 6 0.2603 1.5351 -4.3846 20 17 -0.9068 2.3572 -5.3723 21 6 0.7041 2.1171 -3.2117 22 17 0.0955 3.6683 -2.7248 23 1 -0.3634 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.7750 0.0863 3.2380 29 1 2.8526 -0.3151 -2.2099 30 1 2.0491 -1.3292 -4.2999 31 1 -0.6219 -0.9415 -5.8444 32 1 -0.0049 0.4515 -6.7648 33 1 1.0435 -0.9568 -6.4725 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336244737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:36 Heat of formation + Delta-G solvation = -6.163014 kcal Electronic energy + Delta-G solvation = -20445.011722 eV Core-core repulsion = 17137.283977 eV Total energy + Delta-G solvation = -3307.727745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81551 -38.03410 -36.31974 -36.10898 -35.10638 -32.79631 -31.59223 -30.45223 -29.44327 -27.50484 -24.87156 -22.90705 -22.43583 -21.60465 -19.66853 -17.22269 -16.65908 -15.96525 -15.82349 -15.15103 -14.44259 -14.26890 -14.07627 -13.95135 -13.44026 -12.88090 -12.82748 -12.66809 -12.44565 -11.93933 -11.69832 -11.67384 -11.47027 -11.23332 -11.09438 -10.91056 -10.86235 -10.72843 -10.41234 -10.37309 -10.20079 -9.91201 -8.95540 -8.62231 -8.47351 -8.33416 -7.72366 -6.33149 -3.93492 1.10959 1.19610 2.06288 2.54567 3.13676 3.20725 3.24590 3.43643 3.92004 4.10763 4.59809 4.82772 4.92757 5.05555 5.21598 5.34264 5.41471 5.53299 5.60775 5.72108 6.00774 6.07619 6.21587 6.31954 6.44105 6.60045 6.68101 6.74338 6.80917 7.29870 7.45876 7.71290 8.03008 8.44531 9.08408 9.31795 9.87865 10.59531 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.023914 B = 0.005219 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.573411 B = 5363.238999 C = 5881.559137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.109 3.891 3 N -0.425 5.425 4 C -0.292 4.292 5 H 0.103 0.897 6 C 0.027 3.973 7 N -0.873 5.873 8 Si 0.933 3.067 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.476 3.524 13 O -0.571 6.571 14 C -0.068 4.068 15 C -0.083 4.083 16 C -0.111 4.111 17 C -0.073 4.073 18 C -0.114 4.114 19 C -0.038 4.038 20 Cl -0.058 7.058 21 C 0.002 3.998 22 Cl -0.034 7.034 23 H 0.036 0.964 24 H 0.089 0.911 25 H 0.019 0.981 26 H 0.037 0.963 27 H 0.114 0.886 28 H 0.268 0.732 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -5.396 -11.917 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 N -0.142 5.142 4 C -0.420 4.420 5 H 0.121 0.879 6 C -0.176 4.176 7 N -0.513 5.513 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.263 3.737 13 O -0.456 6.456 14 C -0.072 4.072 15 C -0.102 4.102 16 C -0.130 4.130 17 C -0.074 4.074 18 C -0.171 4.171 19 C -0.065 4.065 20 Cl -0.029 7.029 21 C -0.027 4.027 22 Cl -0.004 7.004 23 H 0.055 0.945 24 H 0.108 0.892 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.793 -4.749 -11.748 12.975 hybrid contribution -0.135 0.368 0.787 0.879 sum -2.928 -4.381 -10.960 12.161 Atomic orbital electron populations 1.22106 0.96681 0.99664 1.01560 1.21863 0.94820 0.83422 1.01250 1.43693 1.54109 1.11238 1.05159 1.19751 1.27369 1.12858 0.82026 0.87935 1.25382 0.95707 0.96673 0.99803 1.70001 1.31058 1.23253 1.27002 0.85885 0.78833 0.79249 0.80117 1.19777 1.20849 1.19848 1.17614 0.86676 0.86173 0.83210 1.90656 1.49551 1.19472 1.85879 1.20189 0.95827 0.94490 0.96723 1.21467 0.99302 0.93518 0.95930 1.20938 0.97386 1.00183 0.94445 1.19678 0.97320 0.92488 0.97928 1.20841 1.01632 1.01004 0.93615 1.20442 0.97710 0.94948 0.93444 1.98341 1.57090 1.78459 1.69010 1.20678 0.97949 0.89921 0.94136 1.98393 1.85851 1.25071 1.91106 0.94512 0.89220 0.96237 0.94509 0.86810 0.92088 0.83935 0.84576 0.90610 0.90892 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.55 37.16 0.35 -2.67 16 2 C 0.11 2.38 5.01 -4.04 -0.02 2.36 16 3 N -0.42 -10.63 2.64 -115.95 -0.31 -10.94 16 4 C -0.29 -7.84 9.40 -15.00 -0.14 -7.98 16 5 H 0.10 2.89 7.30 -52.48 -0.38 2.51 16 6 C 0.03 0.67 5.29 -17.46 -0.09 0.58 16 7 N -0.87 -21.51 7.85 55.50 0.44 -21.08 16 8 Si 0.93 20.09 29.55 -169.99 -5.02 15.07 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 12 C 0.48 11.74 6.47 -12.41 -0.08 11.66 16 13 O -0.57 -15.93 15.86 5.28 0.08 -15.85 16 14 C -0.07 -1.37 4.25 -104.94 -0.45 -1.82 16 15 C -0.08 -1.36 7.83 -39.16 -0.31 -1.67 16 16 C -0.11 -1.46 9.68 -39.64 -0.38 -1.85 16 17 C -0.07 -0.98 5.89 -104.50 -0.62 -1.59 16 18 C -0.11 -1.12 9.60 36.01 0.35 -0.77 16 19 C -0.04 -0.61 6.31 -39.52 -0.25 -0.86 16 20 Cl -0.06 -0.82 26.27 -51.86 -1.36 -2.18 16 21 C 0.00 0.04 6.35 -39.02 -0.25 -0.21 16 22 Cl -0.03 -0.68 26.40 -51.86 -1.37 -2.05 16 23 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.09 2.16 6.22 -51.93 -0.32 1.84 16 25 H 0.02 0.40 7.32 -51.93 -0.38 0.02 16 26 H 0.04 0.70 4.15 -51.93 -0.22 0.48 16 27 H 0.11 2.66 5.88 -51.93 -0.31 2.36 16 28 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 29 H 0.14 2.18 6.64 -52.48 -0.35 1.83 16 30 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.71 6.88 -51.93 -0.36 0.35 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -28.97 300.63 -8.03 -37.00 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.14 Total: 0.32 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.88 Total: -4.82 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.13 Total: -32.01 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.08 Total: -15.85 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -2.73 Total: -4.23 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.97 -8.03 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336244737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.833 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds