Wall clock time and date at job start Tue Mar 31 2020 07:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47064 * 2 1 4 4 C 1.36881 * 119.99705 * 96.67531 * 3 2 1 5 5 H 1.08005 * 120.00284 * 160.39945 * 4 3 2 6 6 C 1.39038 * 120.00129 * 340.40104 * 4 3 2 7 7 N 1.31362 * 120.00205 * 357.58173 * 6 4 3 8 8 Si 1.86810 * 120.00033 * 177.58025 * 6 4 3 9 9 H 1.48493 * 109.46998 * 60.00147 * 8 6 4 10 10 H 1.48494 * 109.47008 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46835 * 299.99947 * 8 6 4 12 12 C 1.34774 * 120.00414 * 276.67865 * 3 2 1 13 13 O 1.21599 * 120.00031 * 184.31398 * 12 3 2 14 14 C 1.47663 * 119.99811 * 4.32067 * 12 3 2 15 15 C 1.39700 * 120.15027 * 304.94904 * 14 12 3 16 16 C 1.37886 * 119.88164 * 179.74687 * 15 14 12 17 17 C 1.38423 * 120.19777 * 0.25269 * 16 15 14 18 18 C 1.50705 * 119.83845 * 180.02562 * 17 16 15 19 19 C 1.38386 * 120.32142 * 359.97438 * 17 16 15 20 20 Cl 1.73593 * 119.94623 * 180.02562 * 19 17 16 21 21 C 1.38255 * 120.10822 * 0.02562 * 19 17 16 22 22 Cl 1.73600 * 120.09992 * 180.02562 * 21 19 17 23 23 H 1.09011 * 109.47113 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47240 * 299.99295 * 1 2 3 25 25 H 1.08999 * 109.47316 * 59.99748 * 1 2 3 26 26 H 1.09003 * 109.46820 * 240.00453 * 2 1 3 27 27 H 1.08999 * 109.47316 * 120.00252 * 2 1 3 28 28 H 0.97005 * 120.00218 * 179.97438 * 7 6 4 29 29 H 1.08003 * 120.06177 * 0.02562 * 15 14 12 30 30 H 1.07994 * 119.89539 * 180.23033 * 16 15 14 31 31 H 1.08995 * 109.46987 * 89.99709 * 18 17 16 32 32 H 1.08998 * 109.46968 * 210.00247 * 18 17 16 33 33 H 1.08999 * 109.46678 * 329.99306 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3763 1.9805 1.1774 5 1 3.0175 2.8496 1.1680 6 6 1.9147 1.4704 2.3857 7 7 1.0968 0.4425 2.3951 8 14 2.4575 2.2468 3.9957 9 1 2.0388 3.6712 4.0243 10 1 1.8301 1.5231 5.1305 11 1 3.9355 2.1628 4.1122 12 6 2.1150 2.0619 -1.1592 13 8 2.5935 3.1797 -1.1698 14 6 1.6397 1.4502 -2.4164 15 6 2.1269 0.2042 -2.8185 16 6 1.6754 -0.3643 -3.9907 17 6 0.7450 0.2984 -4.7726 18 6 0.2566 -0.3307 -6.0521 19 6 0.2603 1.5351 -4.3846 20 17 -0.9068 2.3572 -5.3723 21 6 0.7041 2.1171 -3.2117 22 17 0.0955 3.6683 -2.7248 23 1 -0.3634 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.7750 0.0863 3.2380 29 1 2.8526 -0.3151 -2.2099 30 1 2.0491 -1.3292 -4.2999 31 1 -0.6219 -0.9415 -5.8444 32 1 -0.0049 0.4515 -6.7648 33 1 1.0435 -0.9568 -6.4725 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336244737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:36 Heat of formation + Delta-G solvation = -21.722599 kcal Electronic energy + Delta-G solvation = -20445.686436 eV Core-core repulsion = 17137.283977 eV Total energy + Delta-G solvation = -3308.402459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29831 -39.60756 -37.57663 -37.51451 -37.00782 -34.22603 -33.25961 -31.73467 -31.22127 -28.74423 -26.63549 -24.38390 -23.82653 -23.06170 -21.27790 -19.02630 -18.36163 -17.32969 -17.22978 -16.74432 -16.06723 -15.79414 -15.42481 -15.29280 -15.07207 -14.58550 -14.39420 -13.76771 -13.62265 -13.38980 -13.14552 -13.12646 -12.89211 -12.77949 -12.68516 -12.48823 -12.27954 -12.09993 -12.09178 -11.98504 -11.76508 -11.64141 -10.83088 -10.45056 -9.80108 -9.71080 -9.55504 -8.23905 -5.94160 -0.16944 -0.06425 0.79898 1.19312 1.40088 1.42672 1.51767 1.93189 2.24197 2.45332 2.95198 3.15510 3.61978 3.76846 3.94343 4.09602 4.20085 4.45195 4.50559 4.65325 4.85111 4.86197 4.90006 4.95838 5.12839 5.16711 5.21788 5.27952 5.39134 5.55941 5.62998 5.89356 6.09959 6.53676 7.14564 7.43411 7.99186 8.66135 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.023914 B = 0.005219 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.573411 B = 5363.238999 C = 5881.559137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.112 3.888 3 N -0.436 5.436 4 C -0.336 4.336 5 H 0.072 0.928 6 C 0.002 3.998 7 N -0.875 5.875 8 Si 0.989 3.011 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.269 1.269 12 C 0.471 3.529 13 O -0.620 6.620 14 C -0.101 4.101 15 C -0.085 4.085 16 C -0.090 4.090 17 C -0.055 4.055 18 C -0.115 4.115 19 C -0.047 4.047 20 Cl -0.044 7.044 21 C -0.018 4.018 22 Cl -0.060 7.060 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.015 0.985 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.274 0.726 29 H 0.152 0.848 30 H 0.188 0.812 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -8.358 -13.754 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.009 4.009 3 N -0.153 5.153 4 C -0.464 4.464 5 H 0.090 0.910 6 C -0.200 4.200 7 N -0.513 5.513 8 Si 0.813 3.187 9 H -0.209 1.209 10 H -0.191 1.191 11 H -0.194 1.194 12 C 0.260 3.740 13 O -0.508 6.508 14 C -0.105 4.105 15 C -0.104 4.104 16 C -0.108 4.108 17 C -0.057 4.057 18 C -0.171 4.171 19 C -0.075 4.075 20 Cl -0.015 7.015 21 C -0.047 4.047 22 Cl -0.031 7.031 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.034 0.966 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.169 0.831 30 H 0.205 0.795 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.258 -7.757 -13.595 15.988 hybrid contribution -0.040 1.219 1.195 1.708 sum -3.299 -6.538 -12.400 14.401 Atomic orbital electron populations 1.21930 0.96252 1.00785 0.99745 1.21906 0.95054 0.81988 1.01998 1.43866 1.54222 1.12389 1.04828 1.19623 1.29456 1.13450 0.83896 0.90961 1.25987 0.95386 0.96935 1.01732 1.70092 1.30356 1.23058 1.27829 0.85063 0.78690 0.77886 0.77069 1.20888 1.19112 1.19406 1.18279 0.85448 0.85738 0.84560 1.90594 1.51463 1.21706 1.87010 1.19884 0.98284 0.96712 0.95621 1.21635 0.99288 0.92025 0.97457 1.21450 0.95660 1.01401 0.92265 1.20274 0.95613 0.90914 0.98874 1.21000 1.03282 1.01445 0.91361 1.20649 0.98162 0.95953 0.92698 1.98345 1.56455 1.78480 1.68211 1.20860 0.98978 0.89277 0.95586 1.98372 1.86201 1.27004 1.91539 0.91730 0.92390 0.96585 0.91202 0.88480 0.91600 0.83066 0.79513 0.88851 0.90838 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 9.55 71.98 0.69 -4.74 16 2 C 0.11 4.89 5.01 86.38 0.43 5.32 16 3 N -0.44 -22.60 2.64 -639.01 -1.68 -24.29 16 4 C -0.34 -18.95 9.40 84.10 0.79 -18.16 16 5 H 0.07 4.39 7.30 -2.91 -0.02 4.37 16 6 C 0.00 0.09 5.29 84.96 0.45 0.54 16 7 N -0.87 -43.38 7.85 21.68 0.17 -43.21 16 8 Si 0.99 41.92 29.55 68.60 2.03 43.95 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 12 C 0.47 24.17 6.47 86.73 0.56 24.74 16 13 O -0.62 -36.75 15.86 -4.03 -0.06 -36.82 16 14 C -0.10 -4.09 4.25 -20.07 -0.09 -4.17 16 15 C -0.09 -2.58 7.83 22.54 0.18 -2.41 16 16 C -0.09 -1.93 9.68 22.23 0.22 -1.71 16 17 C -0.06 -1.25 5.89 -19.78 -0.12 -1.37 16 18 C -0.11 -1.60 9.60 71.24 0.68 -0.92 16 19 C -0.05 -1.41 6.31 22.31 0.14 -1.27 16 20 Cl -0.04 -1.17 26.27 -2.72 -0.07 -1.24 16 21 C -0.02 -0.70 6.35 22.64 0.14 -0.56 16 22 Cl -0.06 -2.53 26.40 -2.72 -0.07 -2.60 16 23 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 24 H 0.06 2.81 6.22 -2.39 -0.01 2.80 16 25 H 0.02 0.65 7.32 -2.39 -0.02 0.63 16 26 H 0.07 2.53 4.15 -2.39 -0.01 2.52 16 27 H 0.10 4.54 5.88 -2.39 -0.01 4.53 16 28 H 0.27 12.75 8.31 -92.70 -0.77 11.98 16 29 H 0.15 4.24 6.64 -2.91 -0.02 4.22 16 30 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.08 6.88 -2.39 -0.02 1.06 16 33 H 0.10 0.89 8.08 -2.39 -0.02 0.87 16 Total: -1.00 -67.94 300.63 5.54 -62.40 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.16 Total: 6.52 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.08 Total: -4.72 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -1.51 Total: -67.50 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.06 Total: -36.82 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 17 Polarization: -3.70 SS G_CDS: -0.14 Total: -3.84 kcal Total: -67.94 5.54 -62.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336244737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.680 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds