Wall clock time and date at job start Tue Mar 31 2020 07:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86808 * 119.99814 * 2 1 4 4 H 1.48496 * 109.46695 * 269.99599 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99208 * 3 2 1 6 6 H 1.48496 * 109.47231 * 149.99396 * 3 2 1 7 7 C 1.37876 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99765 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49759 * 300.05935 * 9 7 2 11 11 C 1.53035 * 109.49891 * 60.16533 * 9 7 2 12 12 C 1.53042 * 109.54021 * 181.31389 * 11 9 7 13 13 C 1.53191 * 109.31021 * 298.63480 * 12 11 9 14 14 N 1.46924 * 108.77817 * 54.63576 * 13 12 11 15 15 S 1.65593 * 120.63369 * 126.39408 * 14 13 12 16 16 O 1.42101 * 106.40177 * 23.53075 * 15 14 13 17 17 O 1.42095 * 106.40463 * 156.46029 * 15 14 13 18 18 C 1.76206 * 107.21644 * 269.99671 * 15 14 13 19 19 C 1.33395 * 125.20419 * 89.99774 * 18 15 14 20 20 C 1.38420 * 114.92164 * 179.97438 * 19 18 15 21 21 C 1.33394 * 114.92121 * 359.97438 * 20 19 18 22 22 S 1.75881 * 125.20404 * 269.69341 * 18 15 14 23 23 C 1.46929 * 118.73409 * 306.38734 * 14 13 12 24 24 H 0.96996 * 119.99687 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.45792 * 301.33617 * 11 9 7 26 26 H 1.08999 * 109.46561 * 61.29171 * 11 9 7 27 27 H 1.09006 * 109.49541 * 58.58370 * 12 11 9 28 28 H 1.09001 * 109.49602 * 178.67727 * 12 11 9 29 29 H 1.08999 * 109.58565 * 174.42221 * 13 12 11 30 30 H 1.08999 * 109.58540 * 294.84388 * 13 12 11 31 31 H 1.07997 * 122.53504 * 359.95921 * 19 18 15 32 32 H 1.08003 * 122.53939 * 179.97438 * 20 19 18 33 33 H 1.07997 * 125.19994 * 180.02562 * 21 20 19 34 34 H 1.08998 * 109.59209 * 293.82131 * 23 14 13 35 35 H 1.09003 * 109.58217 * 173.39412 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6232 -2.5566 0.8896 11 6 0.3747 -2.5829 -1.2512 12 6 -0.4157 -3.8933 -1.2358 13 6 0.5604 -5.0739 -1.2491 14 7 1.5004 -4.9230 -0.1300 15 16 1.7153 -6.1487 0.9625 16 8 1.3336 -7.3472 0.3012 17 8 3.0001 -5.9534 1.5372 18 6 0.5477 -5.9024 2.2590 19 6 -0.6886 -6.4027 2.2858 20 6 -1.4261 -6.0750 3.4104 21 6 -0.7886 -5.3090 4.2971 22 16 0.8366 -4.9656 3.7192 23 6 2.2462 -3.6639 0.0012 24 1 -0.4849 0.8400 -0.0004 25 1 -0.3178 -1.7412 -1.2666 26 1 1.0057 -2.5499 -2.1393 27 1 -1.0285 -3.9380 -0.3354 28 1 -1.0572 -3.9416 -2.1157 29 1 0.0073 -6.0066 -1.1385 30 1 1.1107 -5.0824 -2.1900 31 1 -1.0841 -7.0167 1.4903 32 1 -2.4408 -6.4138 3.5587 33 1 -1.2055 -4.9570 5.2291 34 1 2.9340 -3.5574 -0.8377 35 1 2.8053 -3.6663 0.9368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397666509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:54 Heat of formation + Delta-G solvation = -44.711240 kcal Electronic energy + Delta-G solvation = -21009.928664 eV Core-core repulsion = 17840.449850 eV Total energy + Delta-G solvation = -3169.478814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.059 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -37.79697 -37.72345 -36.93421 -35.61536 -33.34129 -31.13545 -30.13334 -29.81349 -25.14610 -24.37614 -23.61587 -21.71341 -20.24893 -19.39003 -18.74087 -18.05784 -17.10093 -16.20433 -15.94664 -15.41608 -14.71628 -14.62911 -13.97761 -13.59490 -13.24297 -13.14436 -12.92918 -12.81519 -12.70048 -12.49216 -12.19524 -11.85236 -11.78102 -11.36090 -11.30328 -11.00173 -10.87694 -10.76229 -10.73521 -10.26947 -9.96790 -9.87527 -9.49972 -9.19881 -8.87986 -8.47946 -8.47353 -8.19929 -6.04488 -4.11691 0.46993 0.76588 1.54521 1.88951 2.51480 3.27460 3.28851 3.34877 3.38911 3.97748 4.39378 4.70020 4.88432 5.18755 5.26612 5.27834 5.36166 5.65831 5.75700 5.83289 5.98278 6.00260 6.22880 6.28284 6.30885 6.44840 6.57969 6.62088 6.84194 6.98570 7.17819 7.40797 7.67858 7.90297 8.05878 8.36215 8.91940 9.53461 11.00762 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.005938 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.841970 B = 4713.999576 C = 5246.902049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.125 3.875 14 N -0.987 5.987 15 S 2.711 3.289 16 O -0.962 6.962 17 O -0.956 6.956 18 C -0.785 4.785 19 C -0.003 4.003 20 C -0.164 4.164 21 C -0.184 4.184 22 S 0.231 5.769 23 C 0.124 3.876 24 H 0.260 0.740 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.066 0.934 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 -10.692 4.320 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.174 4.174 13 C 0.000 4.000 14 N -0.827 5.827 15 S 2.798 3.202 16 O -0.953 6.953 17 O -0.946 6.946 18 C -0.985 4.985 19 C -0.038 4.038 20 C -0.195 4.195 21 C -0.322 4.322 22 S 0.497 5.503 23 C 0.000 4.000 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.188 0.812 34 H 0.084 0.916 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.740 -10.398 4.887 11.621 hybrid contribution -1.574 0.610 -0.116 1.692 sum -3.314 -9.789 4.771 11.382 Atomic orbital electron populations 1.69878 1.05874 1.26435 1.50481 1.24927 0.94827 0.99019 0.94940 0.86612 0.79948 0.83435 0.78118 1.20696 1.21323 1.19823 1.21107 0.93071 0.90296 1.50979 0.92347 1.18983 0.92940 0.91055 0.95060 0.95112 1.21577 0.99380 0.95282 0.98540 1.22013 0.97637 0.96909 1.00843 1.21446 0.90905 0.98854 0.88830 1.57643 1.54560 1.31994 1.38457 1.01432 0.73203 0.73061 0.72503 1.93538 1.84362 1.43901 1.73453 1.93571 1.36453 1.86034 1.78559 1.36138 1.19233 1.19946 1.23232 1.19951 0.90719 0.95160 0.97978 1.20350 1.02043 1.02349 0.94786 1.26228 0.99017 1.02719 1.04205 1.84334 1.10500 1.46249 1.09185 1.21893 0.94662 0.81909 1.01496 0.93013 0.88766 0.94498 0.92505 0.92527 0.90630 0.91253 0.83195 0.83669 0.81225 0.91602 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.39 8.56 -34.44 -0.29 -13.68 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.92 2.25 -91.65 -0.21 0.71 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.39 4.96 -26.69 -0.13 -2.53 16 12 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 13 C 0.12 2.01 6.38 -3.71 -0.02 1.99 16 14 N -0.99 -17.64 3.29 -113.52 -0.37 -18.01 16 15 S 2.71 47.27 5.83 -107.50 -0.63 46.65 16 16 O -0.96 -17.39 16.51 -57.17 -0.94 -18.34 16 17 O -0.96 -18.71 16.62 -57.17 -0.95 -19.66 16 18 C -0.79 -12.43 6.57 29.04 0.19 -12.24 16 19 C 0.00 -0.04 9.84 -41.21 -0.41 -0.44 16 20 C -0.16 -1.95 10.18 -41.21 -0.42 -2.37 16 21 C -0.18 -2.19 11.23 29.04 0.33 -1.87 16 22 S 0.23 3.44 23.21 -107.50 -2.50 0.94 16 23 C 0.12 2.51 5.60 -3.71 -0.02 2.49 16 24 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.09 2.33 6.05 -51.93 -0.31 2.02 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.15 1.76 8.05 -52.49 -0.42 1.34 16 32 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.53 7.13 -51.93 -0.37 1.16 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -30.02 313.99 -10.69 -40.72 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.40 Total: -0.17 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -1.24 Total: -28.87 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.25 Total: -41.54 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.89 Total: -37.99 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -3.12 Total: 47.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.02 -10.69 -40.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.996 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds