Wall clock time and date at job start Tue Mar 31 2020 07:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86808 * 119.99814 * 2 1 4 4 H 1.48496 * 109.46695 * 269.99599 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99208 * 3 2 1 6 6 H 1.48496 * 109.47231 * 149.99396 * 3 2 1 7 7 C 1.37876 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99765 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49759 * 300.05935 * 9 7 2 11 11 C 1.53035 * 109.49891 * 60.16533 * 9 7 2 12 12 C 1.53042 * 109.54021 * 181.31389 * 11 9 7 13 13 C 1.53191 * 109.31021 * 298.63480 * 12 11 9 14 14 N 1.46924 * 108.77817 * 54.63576 * 13 12 11 15 15 S 1.65593 * 120.63369 * 126.39408 * 14 13 12 16 16 O 1.42101 * 106.40177 * 23.53075 * 15 14 13 17 17 O 1.42095 * 106.40463 * 156.46029 * 15 14 13 18 18 C 1.76206 * 107.21644 * 269.99671 * 15 14 13 19 19 C 1.33395 * 125.20419 * 89.99774 * 18 15 14 20 20 C 1.38420 * 114.92164 * 179.97438 * 19 18 15 21 21 C 1.33394 * 114.92121 * 359.97438 * 20 19 18 22 22 S 1.75881 * 125.20404 * 269.69341 * 18 15 14 23 23 C 1.46929 * 118.73409 * 306.38734 * 14 13 12 24 24 H 0.96996 * 119.99687 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.45792 * 301.33617 * 11 9 7 26 26 H 1.08999 * 109.46561 * 61.29171 * 11 9 7 27 27 H 1.09006 * 109.49541 * 58.58370 * 12 11 9 28 28 H 1.09001 * 109.49602 * 178.67727 * 12 11 9 29 29 H 1.08999 * 109.58565 * 174.42221 * 13 12 11 30 30 H 1.08999 * 109.58540 * 294.84388 * 13 12 11 31 31 H 1.07997 * 122.53504 * 359.95921 * 19 18 15 32 32 H 1.08003 * 122.53939 * 179.97438 * 20 19 18 33 33 H 1.07997 * 125.19994 * 180.02562 * 21 20 19 34 34 H 1.08998 * 109.59209 * 293.82131 * 23 14 13 35 35 H 1.09003 * 109.58217 * 173.39412 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6232 -2.5566 0.8896 11 6 0.3747 -2.5829 -1.2512 12 6 -0.4157 -3.8933 -1.2358 13 6 0.5604 -5.0739 -1.2491 14 7 1.5004 -4.9230 -0.1300 15 16 1.7153 -6.1487 0.9625 16 8 1.3336 -7.3472 0.3012 17 8 3.0001 -5.9534 1.5372 18 6 0.5477 -5.9024 2.2590 19 6 -0.6886 -6.4027 2.2858 20 6 -1.4261 -6.0750 3.4104 21 6 -0.7886 -5.3090 4.2971 22 16 0.8366 -4.9656 3.7192 23 6 2.2462 -3.6639 0.0012 24 1 -0.4849 0.8400 -0.0004 25 1 -0.3178 -1.7412 -1.2666 26 1 1.0057 -2.5499 -2.1393 27 1 -1.0285 -3.9380 -0.3354 28 1 -1.0572 -3.9416 -2.1157 29 1 0.0073 -6.0066 -1.1385 30 1 1.1107 -5.0824 -2.1900 31 1 -1.0841 -7.0167 1.4903 32 1 -2.4408 -6.4138 3.5587 33 1 -1.2055 -4.9570 5.2291 34 1 2.9340 -3.5574 -0.8377 35 1 2.8053 -3.6663 0.9368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397666509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:50 Heat of formation + Delta-G solvation = -63.839651 kcal Electronic energy + Delta-G solvation = -21010.758135 eV Core-core repulsion = 17840.449850 eV Total energy + Delta-G solvation = -3170.308284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.059 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -39.31946 -38.83760 -38.29935 -37.04424 -35.19466 -32.71986 -31.86789 -30.86356 -27.02259 -25.46323 -25.13662 -23.33292 -21.52391 -20.76831 -19.97256 -19.45488 -18.59597 -18.05348 -17.16458 -16.83266 -16.49157 -15.75279 -15.43245 -15.20190 -14.83018 -14.43734 -14.35573 -14.19613 -13.87623 -13.82748 -13.54232 -13.30987 -13.23730 -12.89611 -12.79240 -12.67929 -12.58220 -12.51303 -11.86861 -11.82926 -11.78193 -11.57019 -11.10197 -10.75240 -10.39435 -10.31810 -9.79492 -9.58210 -8.05441 -6.18923 -0.75554 -0.41057 0.42860 0.86788 1.43199 1.45317 1.51634 1.54368 1.95845 2.46394 2.64090 3.21864 3.34350 3.80674 4.01396 4.26794 4.31759 4.35851 4.42398 4.58405 4.61333 4.80526 4.85918 4.89111 4.95051 5.02463 5.10489 5.29481 5.34035 5.39284 5.54624 5.67382 5.73708 6.01986 6.19103 6.41967 6.91823 7.48686 8.97989 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.005938 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.841970 B = 4713.999576 C = 5246.902049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.041 3.959 10 H 0.002 0.998 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.120 3.880 14 N -0.990 5.990 15 S 2.725 3.275 16 O -0.969 6.969 17 O -0.985 6.985 18 C -0.811 4.811 19 C 0.006 3.994 20 C -0.168 4.168 21 C -0.162 4.162 22 S 0.169 5.831 23 C 0.135 3.865 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.185 0.815 33 H 0.205 0.795 34 H 0.069 0.931 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 -11.676 4.386 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.020 0.980 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.004 4.004 14 N -0.829 5.829 15 S 2.815 3.185 16 O -0.959 6.959 17 O -0.976 6.976 18 C -1.014 5.014 19 C -0.030 4.030 20 C -0.198 4.198 21 C -0.299 4.299 22 S 0.435 5.565 23 C 0.010 3.990 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.189 0.811 32 H 0.202 0.798 33 H 0.222 0.778 34 H 0.087 0.913 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.088 -11.398 4.920 12.793 hybrid contribution -1.251 0.881 -0.068 1.532 sum -4.339 -10.517 4.851 12.368 Atomic orbital electron populations 1.70005 1.06926 1.26945 1.51168 1.25600 0.95582 1.01887 0.94832 0.85721 0.78824 0.79914 0.78175 1.20190 1.21165 1.19527 1.21490 0.93232 0.91898 1.50759 0.92708 1.18887 0.93194 0.91304 0.94532 0.97960 1.21403 0.98809 0.96643 0.97494 1.21905 0.97661 0.95082 1.01826 1.21652 0.90615 0.99205 0.88918 1.57595 1.54888 1.30873 1.39548 1.00743 0.72854 0.72583 0.72338 1.93519 1.84485 1.43973 1.73965 1.93528 1.38674 1.86339 1.79012 1.35763 1.20056 1.22442 1.23142 1.20442 0.89839 0.93788 0.98917 1.20770 1.03506 1.01768 0.93711 1.26659 0.96546 1.01491 1.05235 1.84546 1.14014 1.47752 1.10185 1.21562 0.94019 0.82072 1.01331 0.93127 0.91952 0.94758 0.93100 0.89864 0.87973 0.89793 0.81145 0.79810 0.77772 0.91256 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.46 11.32 21.45 0.24 -50.22 16 2 C 0.02 1.08 5.30 84.65 0.45 1.53 16 3 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -28.37 8.56 25.60 0.22 -28.15 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 1.94 2.25 -11.46 -0.03 1.91 16 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.11 -4.62 4.96 30.62 0.15 -4.47 16 12 C -0.13 -4.25 6.08 30.67 0.19 -4.06 16 13 C 0.12 3.64 6.38 86.36 0.55 4.19 16 14 N -0.99 -34.80 3.29 -513.06 -1.69 -36.49 16 15 S 2.72 93.73 5.83 -56.49 -0.33 93.40 16 16 O -0.97 -33.55 16.51 -128.00 -2.11 -35.67 16 17 O -0.98 -39.23 16.62 -128.00 -2.13 -41.35 16 18 C -0.81 -24.99 6.57 66.72 0.44 -24.55 16 19 C 0.01 0.16 9.84 21.22 0.21 0.37 16 20 C -0.17 -3.38 10.18 21.22 0.22 -3.16 16 21 C -0.16 -3.43 11.23 66.72 0.75 -2.68 16 22 S 0.17 5.03 23.21 -56.49 -1.31 3.72 16 23 C 0.13 5.53 5.60 86.36 0.48 6.01 16 24 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.06 3.15 6.05 -2.38 -0.01 3.13 16 26 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.10 2.58 7.13 -2.39 -0.02 2.56 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.17 3.43 8.05 -2.91 -0.02 3.41 16 32 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.21 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 2.87 7.13 -2.39 -0.02 2.85 16 Total: -1.00 -65.62 313.99 -0.58 -66.20 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.09 Total: 8.92 kcal Atomic # 6 Polarization: -56.69 SS G_CDS: 3.63 Total: -53.06 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.44 Total: -86.71 kcal Atomic # 8 Polarization: -72.78 SS G_CDS: -4.24 Total: -77.02 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 98.75 SS G_CDS: -1.64 Total: 97.11 kcal Total: -65.62 -0.58 -66.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.357 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds