Wall clock time and date at job start Tue Mar 31 2020 08:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45204 * 109.46434 * 2 1 4 4 C 1.34805 * 116.99624 * 179.97438 * 3 2 1 5 5 O 1.21558 * 119.99979 * 359.97438 * 4 3 2 6 6 C 1.47108 * 120.00044 * 179.97438 * 4 3 2 7 7 C 1.35294 * 123.15783 * 179.97438 * 6 4 3 8 8 S 1.70935 * 108.82180 * 179.77636 * 7 6 4 9 9 C 1.70768 * 91.13824 * 0.33953 * 8 7 6 10 10 C 1.50705 * 124.70829 * 179.91845 * 9 8 7 11 11 S 1.81405 * 109.46754 * 269.69863 * 10 9 8 12 12 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46925 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47295 * 60.00420 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 N 1.28623 * 110.58398 * 359.65670 * 9 8 7 23 23 H 1.09001 * 109.47174 * 60.00496 * 1 2 3 24 24 H 1.08999 * 109.46635 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47080 * 299.99769 * 1 2 3 26 26 H 1.08996 * 109.47080 * 240.00231 * 2 1 3 27 27 H 1.09001 * 109.47174 * 119.99504 * 2 1 3 28 28 H 1.08000 * 125.58643 * 0.04118 * 7 6 4 29 29 H 1.09000 * 109.47022 * 149.70137 * 10 9 8 30 30 H 1.08998 * 109.46894 * 29.69692 * 10 9 8 31 31 H 1.09004 * 109.47089 * 299.99939 * 12 11 10 32 32 H 1.09004 * 109.47568 * 59.99949 * 12 11 10 33 33 H 1.09000 * 109.46497 * 299.99702 * 13 12 11 34 34 H 1.08996 * 109.46876 * 60.00092 * 13 12 11 35 35 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3503 1.5458 0.0005 5 8 4.0908 0.5818 0.0015 6 6 3.9125 2.9052 0.0000 7 6 5.2420 3.1561 0.0010 8 16 5.4838 4.8483 -0.0064 9 6 3.7984 5.1234 -0.0003 10 6 3.1511 6.4844 -0.0009 11 16 2.8902 7.0305 1.7092 12 6 2.1155 8.6578 1.5041 13 6 1.8275 9.2627 2.8797 14 6 1.1844 10.6149 2.7092 15 1 1.0000 11.0042 1.7188 16 6 0.8316 11.3551 3.8177 17 7 1.0566 10.8812 5.0237 18 14 0.0338 13.0309 3.6063 19 1 -1.2381 12.8824 2.8544 20 1 -0.2456 13.6179 4.9415 21 1 0.9515 13.9249 2.8553 22 7 3.1581 4.0079 -0.0006 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 6.0225 2.4096 0.0016 29 1 2.1917 6.4301 -0.5154 30 1 3.7992 7.1946 -0.5143 31 1 2.7891 9.3140 0.9529 32 1 1.1819 8.5489 0.9520 33 1 1.1541 8.6066 3.4312 34 1 2.7612 9.3717 3.4312 35 1 0.8087 11.4021 5.8034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419478642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:56 Heat of formation + Delta-G solvation = -57.312492 kcal Electronic energy + Delta-G solvation = -18431.478130 eV Core-core repulsion = 15261.452885 eV Total energy + Delta-G solvation = -3170.025245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.059 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96508 -39.51478 -36.83449 -33.72384 -32.72853 -31.87828 -30.91153 -28.72057 -26.36651 -25.28745 -23.31058 -22.10371 -21.05918 -20.18565 -19.27053 -17.15437 -16.87340 -16.68014 -16.55246 -15.97136 -15.28499 -14.82967 -14.53294 -14.33442 -14.06553 -13.70481 -13.61437 -13.08440 -13.07168 -12.71588 -12.23305 -12.20637 -12.03296 -11.85402 -11.56651 -11.03433 -10.98943 -10.78144 -10.68684 -10.24086 -10.07346 -10.04752 -9.70967 -9.68203 -9.16674 -9.06234 -8.44420 -7.26853 -6.08363 -4.13428 0.08877 0.88424 1.23869 1.32235 2.17296 2.46977 2.93882 3.05545 3.29028 3.34028 3.36022 3.65446 4.39611 4.42702 4.65977 4.68929 4.74727 4.84011 4.97018 4.98929 5.27242 5.29155 5.42494 5.52061 5.59012 5.73411 5.92543 6.10425 6.11047 6.66067 7.09505 7.52665 7.54860 7.60792 7.87148 8.23635 8.91271 9.50656 11.02362 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002686 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.076246 B =10421.156626 C =11422.759373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.332 6.332 4 C 0.552 3.448 5 O -0.505 6.505 6 C 0.024 3.976 7 C -0.227 4.227 8 S 0.257 5.743 9 C 0.049 3.951 10 C -0.025 4.025 11 S -0.255 6.255 12 C -0.060 4.060 13 C 0.038 3.962 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 N -0.414 5.414 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.193 0.807 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 -17.914 -13.028 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.248 6.248 4 C 0.394 3.606 5 O -0.394 6.394 6 C -0.111 4.111 7 C -0.370 4.370 8 S 0.516 5.484 9 C -0.231 4.231 10 C -0.176 4.176 11 S -0.028 6.028 12 C -0.208 4.208 13 C -0.001 4.001 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 N -0.130 5.130 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.210 0.790 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.445 -18.084 -11.936 22.911 hybrid contribution -1.137 0.404 -1.072 1.614 sum 6.308 -17.680 -13.008 22.838 Atomic orbital electron populations 1.21808 0.92249 1.02927 1.04023 1.23120 0.95764 0.79815 1.02597 1.86720 1.22673 1.32166 1.83240 1.19778 0.81077 0.87354 0.72427 1.90871 1.60764 1.41133 1.46616 1.19213 0.89039 0.91575 1.11287 1.26722 1.00462 1.03194 1.06667 1.83026 1.07518 0.95699 1.62172 1.26328 0.94838 0.97490 1.04442 1.21820 1.04175 0.90675 1.00923 1.87287 1.82162 1.26934 1.06466 1.23788 1.00679 0.90359 1.05992 1.18906 0.97881 0.95198 0.88107 1.21038 1.40715 1.01710 0.92790 0.92420 1.25012 0.95732 0.98305 0.95172 1.69958 1.47129 1.38121 0.97648 0.86573 0.79856 0.83775 0.77303 1.20122 1.21167 1.20137 1.66959 1.36561 0.96451 1.13006 0.91312 0.90151 0.91104 0.91144 0.91032 0.78962 0.87049 0.87935 0.91018 0.90938 0.95415 0.95466 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.58 6.20 37.16 0.23 0.81 16 3 O -0.33 -4.39 10.16 -40.78 -0.41 -4.81 16 4 C 0.55 7.60 7.94 34.33 0.27 7.88 16 5 O -0.51 -7.30 16.51 -19.31 -0.32 -7.61 16 6 C 0.02 0.32 6.71 -84.55 -0.57 -0.25 16 7 C -0.23 -2.41 10.62 29.68 0.32 -2.09 16 8 S 0.26 2.50 22.92 -107.50 -2.46 0.04 16 9 C 0.05 0.64 6.60 -13.62 -0.09 0.55 16 10 C -0.03 -0.33 6.51 36.01 0.23 -0.09 16 11 S -0.26 -4.52 21.72 -107.50 -2.33 -6.85 16 12 C -0.06 -1.19 5.88 37.16 0.22 -0.97 16 13 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 14 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 N -0.41 -6.09 10.60 -8.53 -0.09 -6.18 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.19 1.60 8.03 -52.49 -0.42 1.18 16 29 H 0.11 1.41 8.14 -51.92 -0.42 0.99 16 30 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 32 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -32.09 339.97 -8.95 -41.04 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.61 Total: -4.11 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 0.45 Total: -7.10 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.65 Total: -31.76 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.73 Total: -12.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -4.80 Total: -6.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.09 -8.95 -41.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419478642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.274 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds