Wall clock time and date at job start Tue Mar 31 2020 07:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48505 * 109.46938 * 269.99432 * 3 2 1 5 5 H 1.48495 * 109.47378 * 30.00159 * 3 2 1 6 6 H 1.48510 * 109.47062 * 150.00056 * 3 2 1 7 7 C 1.38805 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00250 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99769 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.33641 * 126.03870 * 89.71532 * 18 17 16 20 20 N 1.31777 * 114.50412 * 179.79434 * 19 18 17 21 21 C 1.29029 * 117.12005 * 0.51449 * 20 19 18 22 22 S 1.70976 * 110.16956 * 359.72268 * 21 20 19 23 23 H 0.97004 * 119.99685 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47089 * 59.99606 * 10 9 7 25 25 H 1.09008 * 109.46987 * 300.00321 * 10 9 7 26 26 H 1.09005 * 109.46784 * 59.99884 * 11 10 9 27 27 H 1.08998 * 109.46854 * 300.00340 * 11 10 9 28 28 H 1.09001 * 109.46829 * 59.99637 * 12 11 10 29 29 H 1.08998 * 109.47230 * 300.00373 * 12 11 10 30 30 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 31 31 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 32 32 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 33 33 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 34 34 H 1.08004 * 122.74324 * 359.97438 * 19 18 17 35 35 H 1.08004 * 124.91473 * 179.68068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6420 -7.6675 0.0038 14 6 3.5483 -8.6576 0.0045 15 8 4.7281 -8.3968 0.0047 16 6 3.0944 -10.0947 0.0040 17 6 4.3163 -11.0155 0.0044 18 6 3.8624 -12.4525 0.0045 19 6 3.6207 -13.2007 -1.0761 20 7 3.2372 -14.4336 -0.8126 21 6 3.1320 -14.7639 0.4303 22 16 3.5492 -13.4406 1.4293 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7306 0.8928 25 1 3.1244 -3.7321 -0.8872 26 1 1.3708 -5.4848 -0.8865 27 1 1.3703 -5.4838 0.8934 28 1 3.7600 -6.1473 0.8936 29 1 3.7598 -6.1481 -0.8863 30 1 2.4942 -10.2864 0.8934 31 1 2.4958 -10.2863 -0.8865 32 1 4.9161 -10.8236 -0.8853 33 1 4.9153 -10.8240 0.8946 34 1 3.7335 -12.8265 -2.0830 35 1 2.8243 -15.7355 0.7878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814587478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:06 Heat of formation + Delta-G solvation = -65.413591 kcal Electronic energy + Delta-G solvation = -18059.508466 eV Core-core repulsion = 14889.131931 eV Total energy + Delta-G solvation = -3170.376535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.059 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64612 -40.01580 -36.99617 -34.70665 -33.52799 -32.46254 -30.09083 -27.13833 -26.08032 -25.42090 -23.89115 -21.39863 -20.96496 -20.44044 -18.61358 -17.79846 -17.38249 -16.94078 -16.60160 -15.89881 -15.12018 -14.88918 -14.83360 -14.41022 -14.35762 -14.01334 -13.54015 -13.17124 -12.95547 -12.76026 -12.47798 -12.14934 -12.11702 -11.39210 -11.37449 -11.17116 -11.02166 -10.94429 -10.73700 -10.61907 -10.32881 -10.09566 -9.74192 -9.64625 -9.39759 -9.09514 -8.38094 -6.58735 -6.26677 -3.97913 0.21965 0.88503 1.28723 2.03557 2.33582 2.54739 3.19904 3.20652 3.27466 3.51411 3.90344 4.18026 4.26172 4.41205 4.49412 4.78690 4.81747 4.93394 5.06797 5.08090 5.10352 5.14505 5.36649 5.43698 5.45196 5.51917 5.70311 5.74091 5.86431 6.13125 6.39619 6.41725 6.64079 7.23847 7.57201 7.60348 8.32913 9.19726 10.81448 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.056152 B = 0.001800 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.528207 B =15555.456626 C =15718.576579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.355 6.355 14 C 0.461 3.539 15 O -0.511 6.511 16 C -0.111 4.111 17 C -0.031 4.031 18 C -0.216 4.216 19 C 0.035 3.965 20 N -0.471 5.471 21 C 0.016 3.984 22 S 0.126 5.874 23 H 0.268 0.732 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.178 0.822 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -27.765 1.884 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.271 6.271 14 C 0.304 3.696 15 O -0.399 6.399 16 C -0.149 4.149 17 C -0.071 4.071 18 C -0.337 4.337 19 C -0.116 4.116 20 N -0.184 5.184 21 C -0.282 4.282 22 S 0.379 5.621 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.195 0.805 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.526 -28.017 2.560 28.672 hybrid contribution 2.024 1.589 -0.844 2.708 sum 7.550 -26.428 1.716 27.539 Atomic orbital electron populations 1.70017 1.05929 1.27429 1.47078 1.25022 0.95101 0.99134 0.94504 0.86145 0.79437 0.81424 0.78403 1.20232 1.20714 1.19662 1.22699 0.94596 0.90672 1.58749 0.90829 1.84657 1.08771 0.99244 1.96885 1.23184 1.03455 0.96354 1.03341 1.21289 0.96443 0.91583 1.04334 1.23291 0.97785 0.76541 1.02631 1.86480 1.40304 1.17041 1.83281 1.23521 0.84724 0.88801 0.72572 1.90684 1.18630 1.85170 1.45464 1.21401 0.99724 0.87158 1.06624 1.19830 0.96310 0.85334 1.05651 1.25944 1.10689 1.01908 0.95206 1.21849 1.01041 0.88308 1.00357 1.66344 1.15316 1.17477 1.19250 1.28426 1.04296 1.04147 0.91296 1.84188 1.60989 1.05447 1.11502 0.92232 0.91731 0.91734 0.90333 0.90337 0.91108 0.91099 0.87404 0.87114 0.88402 0.89294 0.80549 0.78415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.74 9.50 30.94 0.29 -14.45 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.19 21.44 -107.50 -2.30 -5.49 16 10 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 11 C -0.10 -1.56 5.60 -26.73 -0.15 -1.71 16 12 C 0.07 1.01 5.47 37.16 0.20 1.21 16 13 O -0.35 -4.57 10.22 -39.26 -0.40 -4.97 16 14 C 0.46 5.22 7.96 36.01 0.29 5.51 16 15 O -0.51 -7.14 15.73 -18.75 -0.29 -7.43 16 16 C -0.11 -0.80 5.79 -27.88 -0.16 -0.96 16 17 C -0.03 -0.21 5.04 -27.89 -0.14 -0.35 16 18 C -0.22 -1.48 5.85 -35.92 -0.21 -1.69 16 19 C 0.04 0.27 11.25 -19.19 -0.22 0.05 16 20 N -0.47 -4.08 10.54 -15.75 -0.17 -4.25 16 21 C 0.02 0.10 12.23 51.59 0.63 0.73 16 22 S 0.13 0.74 23.22 -107.50 -2.50 -1.76 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 25 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.20 0.62 8.06 -52.48 -0.42 0.19 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -33.35 338.65 -8.81 -42.16 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -4.61 Total: -2.93 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 0.65 Total: -11.79 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 0.57 Total: -29.24 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.70 Total: -12.41 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -4.80 Total: -7.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.35 -8.81 -42.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814587478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.253 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds