Wall clock time and date at job start Tue Mar 31 2020 07:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48505 * 109.46938 * 269.99432 * 3 2 1 5 5 H 1.48495 * 109.47378 * 30.00159 * 3 2 1 6 6 H 1.48510 * 109.47062 * 150.00056 * 3 2 1 7 7 C 1.38805 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00250 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99769 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.33641 * 126.03870 * 89.71532 * 18 17 16 20 20 N 1.31777 * 114.50412 * 179.79434 * 19 18 17 21 21 C 1.29029 * 117.12005 * 0.51449 * 20 19 18 22 22 S 1.70976 * 110.16956 * 359.72268 * 21 20 19 23 23 H 0.97004 * 119.99685 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47089 * 59.99606 * 10 9 7 25 25 H 1.09008 * 109.46987 * 300.00321 * 10 9 7 26 26 H 1.09005 * 109.46784 * 59.99884 * 11 10 9 27 27 H 1.08998 * 109.46854 * 300.00340 * 11 10 9 28 28 H 1.09001 * 109.46829 * 59.99637 * 12 11 10 29 29 H 1.08998 * 109.47230 * 300.00373 * 12 11 10 30 30 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 31 31 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 32 32 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 33 33 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 34 34 H 1.08004 * 122.74324 * 359.97438 * 19 18 17 35 35 H 1.08004 * 124.91473 * 179.68068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6420 -7.6675 0.0038 14 6 3.5483 -8.6576 0.0045 15 8 4.7281 -8.3968 0.0047 16 6 3.0944 -10.0947 0.0040 17 6 4.3163 -11.0155 0.0044 18 6 3.8624 -12.4525 0.0045 19 6 3.6207 -13.2007 -1.0761 20 7 3.2372 -14.4336 -0.8126 21 6 3.1320 -14.7639 0.4303 22 16 3.5492 -13.4406 1.4293 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7306 0.8928 25 1 3.1244 -3.7321 -0.8872 26 1 1.3708 -5.4848 -0.8865 27 1 1.3703 -5.4838 0.8934 28 1 3.7600 -6.1473 0.8936 29 1 3.7598 -6.1481 -0.8863 30 1 2.4942 -10.2864 0.8934 31 1 2.4958 -10.2863 -0.8865 32 1 4.9161 -10.8236 -0.8853 33 1 4.9153 -10.8240 0.8946 34 1 3.7335 -12.8265 -2.0830 35 1 2.8243 -15.7355 0.7878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814587478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:05 Heat of formation + Delta-G solvation = -84.711358 kcal Electronic energy + Delta-G solvation = -18060.345280 eV Core-core repulsion = 14889.131931 eV Total energy + Delta-G solvation = -3171.213349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.059 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58375 -40.55497 -38.00630 -35.34378 -34.87884 -34.58290 -30.69863 -28.30156 -27.62007 -26.68909 -24.55638 -22.74765 -21.80973 -20.94934 -19.59293 -19.17197 -18.52983 -17.90588 -17.54308 -16.90300 -16.54024 -16.17104 -16.06792 -15.38954 -15.07431 -14.93724 -14.72343 -14.23839 -13.97194 -13.86983 -13.60835 -13.30856 -13.07026 -12.95283 -12.69428 -12.62638 -12.39105 -12.38041 -11.90285 -11.73513 -11.50515 -11.42908 -11.15441 -10.60023 -10.36791 -10.22566 -9.88378 -8.68733 -8.38705 -6.15298 -0.26189 0.42638 0.81198 1.14378 1.27768 1.39474 1.43810 1.52735 1.81504 1.93778 2.26679 2.95897 3.27190 3.42969 3.58604 3.84273 3.85659 3.96247 3.98454 4.07498 4.17500 4.32300 4.37636 4.46022 4.52634 4.59267 4.68079 4.91510 4.99264 5.01508 5.13296 5.21449 5.39337 5.46966 6.17130 6.67127 6.75565 7.03840 8.70579 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.056152 B = 0.001800 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.528207 B =15555.456626 C =15718.576579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.092 4.092 11 C -0.087 4.087 12 C 0.080 3.920 13 O -0.359 6.359 14 C 0.462 3.538 15 O -0.539 6.539 16 C -0.102 4.102 17 C -0.025 4.025 18 C -0.224 4.224 19 C 0.025 3.975 20 N -0.506 5.506 21 C 0.016 3.984 22 S 0.148 5.852 23 H 0.272 0.728 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.186 0.814 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -28.591 2.219 29.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.689 4.689 8 H 0.092 0.908 9 S 0.043 5.957 10 C -0.241 4.241 11 C -0.125 4.125 12 C 0.005 3.995 13 O -0.276 6.276 14 C 0.306 3.694 15 O -0.429 6.429 16 C -0.140 4.140 17 C -0.065 4.065 18 C -0.345 4.345 19 C -0.126 4.126 20 N -0.220 5.220 21 C -0.281 4.281 22 S 0.401 5.599 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.203 0.797 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.317 -28.864 2.899 29.689 hybrid contribution 1.789 1.702 -0.919 2.635 sum 8.106 -27.162 1.980 28.414 Atomic orbital electron populations 1.70145 1.07641 1.28619 1.47833 1.26062 0.96046 1.03095 0.93710 0.85013 0.78165 0.76381 0.78828 1.19297 1.19885 1.18776 1.23063 0.94856 0.91964 1.59046 0.90770 1.84629 1.13144 1.00845 1.97064 1.23077 1.00762 0.96615 1.03651 1.21108 0.97125 0.89832 1.04441 1.23009 0.96481 0.77077 1.02952 1.86477 1.40824 1.16714 1.83536 1.24299 0.84151 0.89652 0.71249 1.90677 1.19799 1.85589 1.46850 1.21502 1.00170 0.84064 1.08244 1.19740 0.96045 0.85327 1.05399 1.25912 1.11081 1.01865 0.95660 1.22060 1.01084 0.88294 1.01115 1.66385 1.16860 1.18186 1.20524 1.28929 1.02992 1.05295 0.90844 1.84114 1.60320 1.04833 1.10617 0.91896 0.91350 0.91348 0.90275 0.90255 0.90830 0.90831 0.85722 0.85303 0.88597 0.89757 0.79708 0.75844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.19 13.22 21.65 0.29 -53.90 16 2 C 0.02 0.90 5.49 84.86 0.47 1.37 16 3 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -30.97 9.50 67.96 0.65 -30.33 16 8 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 9 S -0.19 -9.69 21.44 -56.49 -1.21 -10.90 16 10 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 11 C -0.09 -2.68 5.60 30.59 0.17 -2.50 16 12 C 0.08 2.12 5.47 71.98 0.39 2.51 16 13 O -0.36 -8.67 10.22 -51.41 -0.53 -9.19 16 14 C 0.46 9.74 7.96 71.24 0.57 10.30 16 15 O -0.54 -14.47 15.73 21.97 0.35 -14.13 16 16 C -0.10 -1.25 5.79 29.85 0.17 -1.08 16 17 C -0.03 -0.31 5.04 29.85 0.15 -0.16 16 18 C -0.22 -2.73 5.85 24.64 0.14 -2.58 16 19 C 0.03 0.35 11.25 83.66 0.94 1.29 16 20 N -0.51 -8.17 10.54 -203.74 -2.15 -10.32 16 21 C 0.02 0.17 12.23 130.65 1.60 1.77 16 22 S 0.15 1.46 23.22 -56.49 -1.31 0.15 16 23 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 29 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.23 0.90 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -71.65 338.65 4.21 -67.44 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.09 Total: 7.81 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 5.66 Total: -22.57 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -1.86 Total: -64.22 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.18 Total: -23.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -2.52 Total: -10.75 kcal Total: -71.65 4.21 -67.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814587478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.269 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds