Wall clock time and date at job start Tue Mar 31 2020 07:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47016 * 2 1 4 4 C 1.53004 * 109.47016 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00437 * 274.29221 * 5 4 3 7 7 H 1.07994 * 120.00189 * 173.85918 * 6 5 4 8 8 C 1.38817 * 119.99466 * 353.86085 * 6 5 4 9 9 N 1.31612 * 120.00354 * 34.03119 * 8 6 5 10 10 Si 1.86805 * 119.99430 * 214.03261 * 8 6 5 11 11 H 1.48495 * 109.47391 * 85.00180 * 10 8 6 12 12 H 1.48507 * 109.46832 * 205.00126 * 10 8 6 13 13 H 1.48503 * 109.47090 * 324.99660 * 10 8 6 14 14 C 1.46501 * 119.99784 * 94.29505 * 5 4 3 15 15 C 1.50707 * 109.47123 * 270.00055 * 14 5 4 16 16 N 1.30847 * 125.89258 * 269.97444 * 15 14 5 17 17 N 1.40074 * 108.21875 * 179.76652 * 16 15 14 18 18 H 0.96998 * 126.03611 * 180.27242 * 17 16 15 19 19 C 1.35011 * 107.92932 * 0.42246 * 17 16 15 20 20 C 1.35362 * 107.73175 * 359.58179 * 19 17 16 21 21 Br 1.89108 * 126.04546 * 180.28143 * 20 19 17 22 22 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47263 * 300.00414 * 1 2 3 24 24 H 1.08997 * 109.46688 * 60.00212 * 1 2 3 25 25 H 1.09001 * 109.47263 * 239.99586 * 2 1 3 26 26 H 1.09003 * 109.46855 * 119.99410 * 2 1 3 27 27 H 1.09001 * 109.47442 * 59.99696 * 3 2 1 28 28 H 1.09003 * 109.46826 * 299.99427 * 3 2 1 29 29 H 1.08994 * 109.46944 * 59.99358 * 4 3 2 30 30 H 1.08997 * 109.46688 * 299.99788 * 4 3 2 31 31 H 0.96999 * 119.99737 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47468 * 149.99388 * 14 5 4 33 33 H 1.09002 * 109.47454 * 29.99748 * 14 5 4 34 34 H 1.08005 * 126.13534 * 179.84987 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2034 3.4982 -1.1828 7 1 4.4676 4.5453 -1.1785 8 6 4.0109 2.8359 -2.3875 9 7 3.1100 1.8805 -2.4766 10 14 5.0305 3.3007 -3.8821 11 1 6.3211 2.5671 -3.8486 12 1 4.2892 2.9420 -5.1180 13 1 5.2914 4.7626 -3.8682 14 6 4.3915 3.4834 1.2650 15 6 3.1699 4.1819 1.8043 16 7 2.8171 5.4160 1.5503 17 7 1.6244 5.6805 2.2357 18 1 1.1338 6.5171 2.2253 19 6 1.2801 4.5662 2.9159 20 6 2.2175 3.6229 2.6633 21 35 2.2362 1.8609 3.3498 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 3.9337 0.9285 -0.8890 30 1 3.9329 0.9289 0.8909 31 1 2.9753 1.4180 -3.3185 32 1 5.1830 4.2136 1.0965 33 1 4.7316 2.7387 1.9846 34 1 0.4103 4.4473 3.5450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139025711.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:23 Heat of formation + Delta-G solvation = 98.424117 kcal Electronic energy + Delta-G solvation = -17787.444304 eV Core-core repulsion = 14997.240793 eV Total energy + Delta-G solvation = -2790.203511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 301.049 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.72670 -36.27067 -33.44965 -32.26657 -31.27731 -30.39058 -28.23472 -27.90592 -25.97505 -23.49118 -21.45328 -20.60496 -19.73170 -19.08781 -17.76068 -16.52726 -15.09786 -14.30260 -14.11727 -13.97703 -13.39131 -13.23496 -13.09742 -12.95887 -12.48284 -11.70773 -11.47083 -11.42454 -10.99902 -10.81574 -10.53851 -10.38196 -10.34549 -10.02158 -9.90760 -9.73804 -9.63967 -9.41363 -9.04178 -8.86812 -8.06702 -8.04893 -6.93384 -5.76309 -2.93303 2.12052 2.21332 3.10131 3.36175 3.47690 3.55319 3.57968 4.60685 5.01737 5.23230 5.40707 5.62762 5.73499 5.94890 5.95622 6.04720 6.16692 6.43102 6.60012 6.61474 6.71092 6.88760 6.90652 6.92072 7.12576 7.41298 7.47398 7.53548 7.86080 7.95000 8.11188 8.30761 8.39104 9.30515 9.92445 10.37454 11.27165 Molecular weight = 301.05amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.007655 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.446992 B = 3656.736312 C = 4555.518261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.123 4.123 4 C 0.169 3.831 5 N -0.579 5.579 6 C -0.255 4.255 7 H 0.078 0.922 8 C 0.011 3.989 9 N -0.875 5.875 10 Si 0.879 3.121 11 H -0.289 1.289 12 H -0.296 1.296 13 H -0.283 1.283 14 C 0.215 3.785 15 C 0.107 3.893 16 N -0.279 5.279 17 N -0.482 5.482 18 H 0.436 0.564 19 C 0.078 3.922 20 C -0.225 4.225 21 Br -0.027 7.027 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.011 0.989 31 H 0.251 0.749 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 0.228 13.114 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.162 4.162 4 C 0.045 3.955 5 N -0.298 5.298 6 C -0.384 4.384 7 H 0.096 0.904 8 C -0.188 4.188 9 N -0.519 5.519 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.223 1.223 13 H -0.208 1.208 14 C 0.084 3.916 15 C -0.066 4.066 16 N -0.102 5.102 17 N -0.188 5.188 18 H 0.279 0.721 19 C -0.073 4.073 20 C -0.317 4.317 21 Br 0.056 6.944 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.545 0.552 12.568 13.376 hybrid contribution -0.539 0.376 -0.582 0.878 sum -5.084 0.928 11.986 13.052 Atomic orbital electron populations 1.21709 0.97866 0.99472 1.00934 1.21347 0.93963 0.99750 0.99762 1.22234 0.98349 0.93733 1.01891 1.21071 0.92486 0.83828 0.98139 1.44486 1.74451 1.10673 1.00180 1.19235 1.41228 0.94855 0.83036 0.90381 1.24677 0.98560 0.98504 0.97035 1.70332 1.29005 1.27529 1.25009 0.86624 0.81757 0.77994 0.82790 1.21600 1.22321 1.20812 1.19465 0.89445 0.94338 0.88337 1.24255 0.99832 0.90363 0.92157 1.77526 0.97485 1.17351 1.17861 1.46380 1.21572 1.12663 1.38172 0.72089 1.22231 0.99401 0.87498 0.98138 1.21706 1.03223 0.94096 1.12674 1.96501 1.98870 1.14542 1.84534 0.94551 0.93851 0.93245 0.92747 0.94502 0.94642 0.89123 0.90094 0.97061 0.93858 0.91622 0.91529 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.16 0.37 -2.10 16 2 C -0.11 -2.15 5.93 -26.73 -0.16 -2.30 16 3 C -0.12 -2.74 4.88 -26.73 -0.13 -2.87 16 4 C 0.17 3.97 5.01 -4.04 -0.02 3.95 16 5 N -0.58 -14.04 2.52 -174.61 -0.44 -14.48 16 6 C -0.26 -6.88 9.63 -15.06 -0.15 -7.02 16 7 H 0.08 2.15 8.02 -52.49 -0.42 1.73 16 8 C 0.01 0.29 4.91 -17.43 -0.09 0.20 16 9 N -0.87 -23.99 8.54 55.49 0.47 -23.51 16 10 Si 0.88 21.53 29.67 -169.99 -5.04 16.49 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.22 4.49 6.09 -5.19 -0.03 4.46 16 15 C 0.11 2.12 6.72 -82.38 -0.55 1.57 16 16 N -0.28 -5.50 12.70 33.68 0.43 -5.08 16 17 N -0.48 -7.18 7.36 30.47 0.22 -6.96 16 18 H 0.44 4.73 8.96 -182.62 -1.64 3.10 16 19 C 0.08 1.12 11.96 -17.18 -0.21 0.91 16 20 C -0.23 -3.88 5.34 -39.98 -0.21 -4.09 16 21 Br -0.03 -0.43 31.69 -68.01 -2.16 -2.58 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.76 4.57 -51.93 -0.24 0.53 16 28 H 0.09 2.42 6.27 -51.93 -0.33 2.10 16 29 H 0.08 2.13 5.90 -51.93 -0.31 1.82 16 30 H 0.01 0.24 7.84 -51.93 -0.41 -0.16 16 31 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 33 H 0.07 1.27 7.59 -51.93 -0.39 0.88 16 34 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -29.59 298.45 -9.01 -38.60 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.82 Total: 0.32 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.18 Total: -7.30 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.69 Total: -50.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.04 Total: 16.49 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.16 Total: -2.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.59 -9.01 -38.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139025711.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.027 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds