Wall clock time and date at job start Tue Mar 31 2020 08:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46881 * 2 1 4 4 N 1.46904 * 109.47245 * 179.60412 * 3 2 1 5 5 C 1.46905 * 110.99738 * 298.09522 * 4 3 2 6 6 C 1.50700 * 109.46831 * 292.94971 * 5 4 3 7 7 H 1.08001 * 120.00178 * 354.95959 * 6 5 4 8 8 C 1.37881 * 120.00019 * 174.96054 * 6 5 4 9 9 N 1.31515 * 119.99740 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99912 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47155 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.46951 * 120.00234 * 10 8 6 13 13 H 1.48504 * 109.46748 * 240.00170 * 10 8 6 14 14 C 1.46896 * 110.99773 * 62.04344 * 4 3 2 15 15 C 1.50697 * 109.47405 * 66.05247 * 14 4 3 16 16 N 1.30846 * 125.89530 * 269.97749 * 15 14 4 17 17 N 1.40078 * 108.22128 * 179.76362 * 16 15 14 18 18 H 0.97009 * 126.03649 * 180.27173 * 17 16 15 19 19 C 1.35009 * 107.92899 * 0.41599 * 17 16 15 20 20 C 1.35362 * 107.73415 * 359.58775 * 19 17 16 21 21 Br 1.89097 * 126.04970 * 180.28357 * 20 19 17 22 22 H 1.08998 * 109.47323 * 299.99923 * 1 2 3 23 23 H 1.09003 * 109.47348 * 60.00138 * 1 2 3 24 24 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46751 * 240.00481 * 2 1 3 26 26 H 1.08990 * 109.47114 * 120.00079 * 2 1 3 27 27 H 1.09002 * 109.47307 * 59.60624 * 3 2 1 28 28 H 1.08999 * 109.47544 * 299.60167 * 3 2 1 29 29 H 1.08997 * 109.47558 * 52.94553 * 5 4 3 30 30 H 1.08998 * 109.46958 * 172.95030 * 5 4 3 31 31 H 0.97000 * 119.99375 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47494 * 306.04651 * 14 4 3 33 33 H 1.09003 * 109.47158 * 186.04828 * 14 4 3 34 34 H 1.08005 * 126.13654 * 179.84951 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0096 5 6 4.0275 0.7995 1.2244 6 6 3.6824 1.6422 2.4251 7 1 3.2051 2.6019 2.2923 8 6 3.9758 1.1879 3.6935 9 7 4.5574 0.0195 3.8552 10 14 3.5486 2.2328 5.1819 11 1 2.9071 3.4946 4.7332 12 1 2.6121 1.4853 6.0590 13 1 4.7879 2.5492 5.9365 14 6 4.0432 0.7969 -1.1969 15 6 3.6927 1.6243 -2.4066 16 7 2.6108 1.5021 -3.1323 17 7 2.6602 2.4565 -4.1564 18 1 1.9866 2.5948 -4.8407 19 6 3.8124 3.1479 -4.0250 20 6 4.4681 2.6555 -2.9480 21 35 6.1366 3.2556 -2.2909 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.6709 1.9584 0.8864 28 1 1.6825 1.9543 -0.8935 29 1 3.5790 -0.1880 1.3325 30 1 5.1104 0.7005 1.1491 31 1 4.7642 -0.2998 4.7475 32 1 3.6096 -0.1979 -1.2990 33 1 5.1270 0.7142 -1.1150 34 1 4.1485 3.9527 -4.6621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139027717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:17 Heat of formation + Delta-G solvation = 55.098300 kcal Electronic energy + Delta-G solvation = -17226.431991 eV Core-core repulsion = 14434.349732 eV Total energy + Delta-G solvation = -2792.082260 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 301.049 amu Computer time = 4.02 seconds Orbital eigenvalues (eV) -42.26350 -39.02517 -34.83741 -34.02828 -32.87408 -32.39705 -29.66237 -29.25203 -27.80230 -25.75455 -23.71196 -22.48404 -21.61456 -20.16875 -19.02557 -18.29197 -16.96601 -16.56346 -16.11634 -15.72525 -15.42720 -14.96830 -14.56200 -14.40180 -14.20571 -13.79674 -13.26100 -12.92003 -12.72431 -12.64270 -12.52158 -12.32792 -12.24054 -11.94098 -11.88179 -11.83484 -11.29856 -11.25359 -10.89360 -10.57943 -10.49021 -9.42540 -8.86742 -8.13858 -6.21811 0.78269 0.91624 1.42122 1.42451 1.45226 1.56614 2.03425 2.44777 3.19032 3.45553 3.71461 3.82642 4.13431 4.16523 4.27017 4.49972 4.54794 4.57931 4.73979 4.74476 4.90753 5.05886 5.14943 5.18270 5.23393 5.35438 5.45581 5.53446 5.73204 6.12472 6.31833 6.40052 6.57510 6.65866 6.93831 7.46587 8.96885 Molecular weight = 301.05amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.005944 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.371640 B = 4709.156822 C = 6026.096216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C 0.076 3.924 4 N -0.528 5.528 5 C 0.208 3.792 6 C -0.512 4.512 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.126 3.874 15 C 0.112 3.888 16 N -0.303 5.303 17 N -0.453 5.453 18 H 0.461 0.539 19 C 0.118 3.882 20 C -0.253 4.253 21 Br -0.025 7.025 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.067 0.933 29 H -0.017 1.017 30 H 0.002 0.998 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 6.782 -18.952 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.190 4.190 3 C -0.052 4.052 4 N -0.252 5.252 5 C 0.082 3.918 6 C -0.550 4.550 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.004 4.004 15 C -0.056 4.056 16 N -0.128 5.128 17 N -0.163 5.163 18 H 0.309 0.691 19 C -0.034 4.034 20 C -0.344 4.344 21 Br 0.058 6.942 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.001 0.999 30 H 0.020 0.980 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.296 6.743 -18.756 20.063 hybrid contribution -0.067 -0.323 0.718 0.790 sum -2.363 6.420 -18.037 19.291 Atomic orbital electron populations 1.21564 0.94053 1.01773 1.01695 1.21985 0.97754 0.98865 1.00410 1.21941 0.87226 0.95367 1.00692 1.62191 1.07652 1.54230 1.01080 1.19414 0.93473 0.92375 0.86513 1.21402 1.38541 1.04030 0.91044 0.92456 1.25785 0.95305 0.96269 1.01914 1.70084 1.43633 1.20493 1.23186 0.85451 0.77934 0.78950 0.79009 1.19020 1.20513 1.20511 1.20387 1.00142 0.93704 0.86197 1.21983 0.91725 0.96003 0.95859 1.77370 1.20863 1.12812 1.01723 1.46264 1.18147 1.26598 1.25307 0.69054 1.22978 0.86337 0.97318 0.96754 1.21908 1.00083 1.07507 1.04945 1.96600 1.21155 1.88323 1.88114 0.93212 0.91894 0.92225 0.92453 0.94178 0.92542 0.91464 0.99944 0.97995 0.92857 0.93931 0.89932 0.75427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.15 -5.76 5.28 30.59 0.16 -5.60 16 3 C 0.08 3.11 4.99 86.30 0.43 3.55 16 4 N -0.53 -23.54 4.69 -905.37 -4.24 -27.78 16 5 C 0.21 11.14 4.53 85.56 0.39 11.53 16 6 C -0.51 -29.32 8.40 25.60 0.21 -29.10 16 7 H 0.06 3.29 7.37 -2.91 -0.02 3.26 16 8 C 0.01 0.29 5.46 84.66 0.46 0.75 16 9 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 10 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 C 0.13 4.85 5.14 85.56 0.44 5.29 16 15 C 0.11 3.68 5.85 43.11 0.25 3.94 16 16 N -0.30 -8.84 11.91 -47.35 -0.56 -9.40 16 17 N -0.45 -8.54 7.36 -57.52 -0.42 -8.96 16 18 H 0.46 4.68 8.96 -213.32 -1.91 2.76 16 19 C 0.12 2.18 11.96 83.54 1.00 3.18 16 20 C -0.25 -7.03 6.52 22.01 0.14 -6.89 16 21 Br -0.02 -0.70 33.62 -20.37 -0.68 -1.39 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 2.12 6.34 -2.39 -0.02 2.10 16 26 H 0.04 1.79 6.28 -2.39 -0.02 1.78 16 27 H 0.06 2.54 6.98 -2.39 -0.02 2.53 16 28 H 0.07 2.57 6.62 -2.39 -0.02 2.55 16 29 H -0.02 -0.98 6.01 -2.39 -0.01 -0.99 16 30 H 0.00 0.11 7.91 -2.39 -0.02 0.09 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.04 1.65 6.07 -2.39 -0.01 1.64 16 33 H 0.08 3.25 7.64 -2.39 -0.02 3.23 16 34 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -68.74 300.74 -0.19 -68.93 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -0.79 Total: 4.40 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.20 Total: -16.75 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -4.94 Total: -102.31 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -0.68 Total: -1.39 kcal Total: -68.74 -0.19 -68.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139027717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.028 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.02 seconds