Wall clock time and date at job start Tue Mar 31 2020 08:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36935 * 120.00064 * 2 1 4 4 H 1.07998 * 120.00035 * 153.09112 * 3 2 1 5 5 C 1.38811 * 120.00037 * 333.09416 * 3 2 1 6 6 N 1.31614 * 120.00170 * 359.44838 * 5 3 2 7 7 Si 1.86803 * 120.00093 * 179.45415 * 5 3 2 8 8 H 1.48492 * 109.47401 * 89.99739 * 7 5 3 9 9 H 1.48499 * 109.47158 * 210.00001 * 7 5 3 10 10 H 1.48504 * 109.47082 * 329.99659 * 7 5 3 11 11 C 1.46501 * 120.00321 * 180.02562 * 2 1 3 12 12 F 1.39899 * 109.47625 * 126.93905 * 11 2 1 13 13 F 1.39894 * 109.47095 * 246.94362 * 11 2 1 14 14 C 1.50709 * 109.46857 * 6.94018 * 11 2 1 15 15 C 1.34217 * 126.56349 * 238.05068 * 14 11 2 16 16 N 1.36946 * 109.89892 * 179.83189 * 15 14 11 17 17 H 0.96998 * 124.98776 * 180.18092 * 16 15 14 18 18 C 1.37414 * 110.01915 * 0.44484 * 16 15 14 19 19 N 1.32700 * 133.16193 * 179.67375 * 18 16 15 20 20 C 1.31678 * 121.65358 * 180.02562 * 19 18 16 21 21 Cl 1.73595 * 119.22395 * 180.02562 * 20 19 18 22 22 C 1.38820 * 121.54393 * 0.04237 * 20 19 18 23 23 C 1.38132 * 119.40769 * 359.97438 * 22 20 19 24 24 C 1.39736 * 118.06269 * 359.97438 * 23 22 20 25 25 H 1.09005 * 109.47170 * 209.63396 * 1 2 3 26 26 H 1.09000 * 109.47122 * 329.63053 * 1 2 3 27 27 H 1.09001 * 109.47741 * 89.62999 * 1 2 3 28 28 H 0.97001 * 120.00850 * 180.02562 * 6 5 3 29 29 H 1.07991 * 125.05156 * 359.97438 * 15 14 11 30 30 H 1.08005 * 120.29879 * 179.97438 * 22 20 19 31 31 H 1.08002 * 120.97419 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1419 1.2365 0.4233 5 6 1.5683 2.3230 -0.5440 6 7 0.3634 2.2589 -1.0696 7 14 2.4962 3.9442 -0.5303 8 1 3.3017 4.0641 -1.7720 9 1 1.5282 5.0680 -0.4578 10 1 3.3964 3.9893 0.6500 11 6 2.1975 -1.2687 -0.0006 12 9 3.1172 -1.2758 -1.0548 13 9 2.8780 -1.4148 1.2129 14 6 1.2272 -2.4089 -0.1728 15 6 1.0491 -3.4409 0.6667 16 7 0.0791 -4.2760 0.1795 17 1 -0.2250 -5.0882 0.6138 18 6 -0.3959 -3.7973 -1.0177 19 7 -1.3136 -4.2349 -1.8705 20 6 -1.5953 -3.5811 -2.9782 21 17 -2.8081 -4.2106 -4.0488 22 6 -0.9451 -2.4003 -3.3099 23 6 0.0205 -1.8960 -2.4605 24 6 0.3023 -2.6059 -1.2904 25 1 -0.3634 -0.8933 0.5082 26 1 -0.3633 0.8867 0.5196 27 1 -0.3634 0.0066 -1.0276 28 1 -0.0428 3.0533 -1.4501 29 1 1.5887 -3.5894 1.5902 30 1 -1.1918 -1.8806 -4.2240 31 1 0.5418 -0.9793 -2.6935 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165092282.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:51 Heat of formation + Delta-G solvation = -12.655452 kcal Electronic energy + Delta-G solvation = -22645.243004 eV Core-core repulsion = 18817.729796 eV Total energy + Delta-G solvation = -3827.513207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.049 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.50577 -47.64890 -42.76470 -39.22573 -37.44837 -37.26850 -34.42227 -33.08902 -31.38513 -30.45408 -28.02245 -26.91870 -24.95119 -23.90275 -23.61982 -20.74522 -19.70130 -19.18806 -18.45503 -18.06770 -17.91655 -17.19081 -16.56659 -16.37212 -16.13707 -15.94825 -15.00666 -14.69331 -14.56019 -14.44244 -14.24899 -14.07905 -13.98646 -13.88794 -13.40511 -13.16673 -12.79429 -12.66091 -12.42002 -12.32761 -12.26638 -12.17819 -11.86192 -11.49666 -10.75137 -10.71299 -9.56739 -9.31714 -9.20112 -7.96512 -5.58030 -0.29055 0.09359 0.57567 1.26301 1.47224 1.48688 1.57599 1.71525 2.37350 2.58526 2.74629 3.18884 3.28010 3.43162 3.52088 3.80795 3.91242 4.08895 4.21541 4.37895 4.53642 4.71499 4.82904 4.97253 5.12466 5.27205 5.29597 5.54770 5.61857 5.66273 6.10152 6.15390 6.68010 6.98038 7.51114 8.01029 9.06871 Molecular weight = 301.05amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.005460 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.472653 B = 5126.856378 C = 6225.082557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.614 5.614 3 C -0.294 4.294 4 H 0.064 0.936 5 C -0.024 4.024 6 N -0.921 5.921 7 Si 0.974 3.026 8 H -0.282 1.282 9 H -0.285 1.285 10 H -0.272 1.272 11 C 0.574 3.426 12 F -0.219 7.219 13 F -0.215 7.215 14 C -0.246 4.246 15 C 0.148 3.852 16 N -0.553 5.553 17 H 0.444 0.556 18 C 0.293 3.707 19 N -0.501 5.501 20 C 0.206 3.794 21 Cl -0.014 7.014 22 C -0.173 4.173 23 C -0.011 4.011 24 C -0.128 4.128 25 H 0.020 0.980 26 H 0.033 0.967 27 H 0.024 0.976 28 H 0.256 0.744 29 H 0.229 0.771 30 H 0.169 0.831 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -13.627 -0.368 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.344 5.344 3 C -0.422 4.422 4 H 0.082 0.918 5 C -0.221 4.221 6 N -0.564 5.564 7 Si 0.801 3.199 8 H -0.208 1.208 9 H -0.211 1.211 10 H -0.197 1.197 11 C 0.449 3.551 12 F -0.201 7.201 13 F -0.197 7.197 14 C -0.255 4.255 15 C 0.018 3.982 16 N -0.161 5.161 17 H 0.287 0.713 18 C 0.059 3.941 19 N -0.217 5.217 20 C 0.034 3.966 21 Cl 0.014 6.986 22 C -0.195 4.195 23 C -0.038 4.038 24 C -0.135 4.135 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.245 0.755 30 H 0.186 0.814 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.264 -14.471 -0.204 15.087 hybrid contribution 0.821 1.525 -0.228 1.747 sum -3.442 -12.946 -0.433 13.403 Atomic orbital electron populations 1.20709 0.79867 0.96289 0.98432 1.45062 1.03600 1.00085 1.85605 1.19319 1.01044 0.87220 1.34661 0.91846 1.25858 0.97548 1.01928 0.96799 1.70176 1.14995 1.29376 1.41890 0.85191 0.77850 0.78691 0.78163 1.20836 1.21053 1.19655 1.17401 0.78610 0.86867 0.72239 1.92972 1.70759 1.96958 1.59423 1.92963 1.82825 1.96111 1.47820 1.20138 1.05428 0.99776 1.00132 1.22183 0.89713 0.87581 0.98718 1.41432 1.33196 1.24932 1.16570 0.71332 1.17918 0.94524 0.91907 0.89702 1.65530 1.17326 1.35188 1.03654 1.21234 0.93393 0.91655 0.90310 1.98391 1.52642 1.87428 1.60100 1.21693 0.98344 0.96413 1.03074 1.21087 0.94286 0.97413 0.90981 1.19599 0.99860 0.97253 0.96782 0.96170 0.94838 0.95800 0.93416 0.75509 0.81393 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.23 7.31 127.77 0.93 10.17 16 2 N -0.61 -31.23 3.22 -725.93 -2.33 -33.56 16 3 C -0.29 -16.34 9.38 84.03 0.79 -15.55 16 4 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 5 C -0.02 -1.30 5.29 84.86 0.45 -0.85 16 6 N -0.92 -51.48 10.38 21.65 0.22 -51.25 16 7 Si 0.97 44.14 29.55 68.60 2.03 46.16 16 8 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 C 0.57 25.29 2.57 85.64 0.22 25.51 16 12 F -0.22 -10.44 16.92 44.97 0.76 -9.68 16 13 F -0.22 -9.01 16.63 44.97 0.75 -8.27 16 14 C -0.25 -8.71 3.86 -18.65 -0.07 -8.78 16 15 C 0.15 3.64 11.27 82.98 0.94 4.58 16 16 N -0.55 -12.20 6.05 -192.33 -1.16 -13.36 16 17 H 0.44 6.12 8.96 -92.71 -0.83 5.29 16 18 C 0.29 8.84 8.43 133.91 1.13 9.97 16 19 N -0.50 -15.15 10.36 -183.62 -1.90 -17.05 16 20 C 0.21 5.96 7.26 84.86 0.62 6.58 16 21 Cl -0.01 -0.33 29.09 -2.72 -0.08 -0.41 16 22 C -0.17 -5.15 9.85 22.38 0.22 -4.93 16 23 C -0.01 -0.41 8.45 22.61 0.19 -0.21 16 24 C -0.13 -4.53 5.04 -20.18 -0.10 -4.63 16 25 H 0.02 0.87 6.39 -2.38 -0.02 0.86 16 26 H 0.03 1.77 6.93 -2.39 -0.02 1.76 16 27 H 0.02 1.20 5.52 -2.39 -0.01 1.18 16 28 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 29 H 0.23 3.71 7.91 -2.92 -0.02 3.69 16 30 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.13 5.33 7.69 -2.91 -0.02 5.31 16 Total: -1.00 -65.94 289.83 3.97 -61.97 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.38 Total: 3.61 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 5.31 Total: 21.85 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.18 Total: -115.23 kcal Atomic # 9 Polarization: -19.46 SS G_CDS: 1.51 Total: -17.95 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -65.94 3.97 -61.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165092282.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.310 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds