Wall clock time and date at job start Tue Mar 31 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39597 * 120.45084 * 345.77137 * 3 2 1 5 5 C 1.37697 * 120.18260 * 179.74760 * 4 3 2 6 6 C 1.39831 * 121.17575 * 0.23187 * 5 4 3 7 7 C 1.48281 * 119.54395 * 180.02562 * 6 5 4 8 8 C 1.39378 * 120.13181 * 129.72190 * 7 6 5 9 9 C 1.38090 * 119.88074 * 179.79324 * 8 7 6 10 10 Cl 1.73608 * 119.92123 * 180.23375 * 9 8 7 11 11 C 1.38479 * 120.15676 * 0.48441 * 9 8 7 12 12 C 1.38241 * 120.26685 * 359.74902 * 11 9 8 13 13 C 1.38279 * 120.11308 * 0.02562 * 12 11 9 14 14 F 1.35096 * 120.07649 * 179.97438 * 13 12 11 15 15 C 1.38624 * 120.92316 * 0.04761 * 6 5 4 16 16 C 1.40596 * 119.73253 * 359.97438 * 15 6 5 17 17 C 1.40846 * 120.55709 * 180.02562 * 16 15 6 18 18 H 1.07998 * 119.99847 * 155.91172 * 17 16 15 19 19 C 1.40229 * 119.99452 * 335.91786 * 17 16 15 20 20 N 1.30659 * 120.00278 * 341.77569 * 19 17 16 21 21 Si 1.86805 * 119.99821 * 161.78042 * 19 17 16 22 22 H 1.48505 * 109.46818 * 59.99901 * 21 19 17 23 23 H 1.48495 * 109.47152 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47078 * 299.99733 * 21 19 17 25 25 H 1.07995 * 119.90768 * 0.02931 * 4 3 2 26 26 H 1.08002 * 119.41461 * 180.25720 * 5 4 3 27 27 H 1.07991 * 120.06039 * 0.02562 * 8 7 6 28 28 H 1.07998 * 119.87081 * 179.76041 * 11 9 8 29 29 H 1.08006 * 119.94226 * 179.97438 * 12 11 9 30 30 H 1.08001 * 120.13889 * 179.97438 * 15 6 5 31 31 H 0.97004 * 120.00055 * 185.04625 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -1.1655 0.2958 5 6 4.6529 -1.1600 0.2891 6 6 5.3707 0.0031 -0.0063 7 6 6.8531 -0.0319 -0.0037 8 6 7.5667 0.4723 -1.0896 9 6 8.9472 0.4409 -1.0798 10 17 9.8374 1.0743 -2.4291 11 6 9.6232 -0.0993 0.0013 12 6 8.9216 -0.6056 1.0795 13 6 7.5391 -0.5756 1.0835 14 9 6.8542 -1.0711 2.1372 15 6 4.7157 1.1888 -0.3012 16 6 3.3103 1.2268 -0.3049 17 6 2.6271 2.4220 -0.6025 18 1 1.6170 2.3861 -0.9829 19 6 3.2586 3.6583 -0.4050 20 7 4.3092 3.7393 0.3675 21 14 2.5977 5.1896 -1.2464 22 1 1.1979 5.4282 -0.8115 23 1 3.4362 6.3583 -0.8771 24 1 2.6332 4.9998 -2.7187 25 1 2.7423 -2.0757 0.5260 26 1 5.1881 -2.0703 0.5157 27 1 7.0411 0.8903 -1.9353 28 1 10.7029 -0.1250 0.0023 29 1 9.4541 -1.0261 1.9198 30 1 5.2827 2.0798 -0.5271 31 1 4.7022 4.6044 0.5628 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241331079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:38 Heat of formation + Delta-G solvation = -2.459477 kcal Electronic energy + Delta-G solvation = -20423.433998 eV Core-core repulsion = 16994.839395 eV Total energy + Delta-G solvation = -3428.594603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.036 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.82586 -40.36743 -39.14585 -37.41935 -36.95354 -35.87801 -33.50857 -31.81004 -31.29716 -29.96302 -27.57571 -25.08738 -23.79410 -22.75069 -22.35821 -19.55928 -19.03439 -18.46057 -17.62494 -17.39346 -16.85847 -16.58866 -15.80739 -15.65727 -15.09638 -15.04996 -14.58212 -14.48443 -14.35399 -14.19342 -14.01350 -13.53170 -13.48902 -13.37363 -13.14012 -12.86533 -12.57282 -12.53559 -12.16787 -12.13238 -12.02111 -11.56723 -11.54074 -11.23367 -10.23310 -9.64101 -9.54177 -9.04506 -8.84861 -6.56114 -0.21759 0.05486 0.52249 0.98102 1.11089 1.35209 1.45258 1.51077 2.02203 2.11085 2.24295 2.53398 2.63753 3.26793 3.54206 3.57129 3.69188 3.80161 4.09275 4.23037 4.35958 4.61448 4.72190 4.81523 4.93468 5.02463 5.04582 5.13617 5.18457 5.23033 5.42021 5.65151 5.79091 5.89079 5.98910 6.09255 6.38532 6.61924 6.73325 6.94998 8.04973 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.005402 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.796531 B = 5182.100303 C = 6685.414300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.305 3.695 3 C -0.207 4.207 4 C -0.024 4.024 5 C -0.224 4.224 6 C -0.020 4.020 7 C -0.065 4.065 8 C -0.081 4.081 9 C -0.047 4.047 10 Cl -0.060 7.060 11 C -0.078 4.078 12 C -0.131 4.131 13 C 0.095 3.905 14 F -0.139 7.139 15 C -0.155 4.155 16 C 0.128 3.872 17 C -0.461 4.461 18 H 0.072 0.928 19 C 0.047 3.953 20 N -0.783 5.783 21 Si 0.976 3.024 22 H -0.268 1.268 23 H -0.255 1.255 24 H -0.255 1.255 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.136 0.864 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.122 0.878 31 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.042 -2.865 -1.393 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.003 4.003 3 C -0.213 4.213 4 C -0.044 4.044 5 C -0.243 4.243 6 C -0.021 4.021 7 C -0.066 4.066 8 C -0.100 4.100 9 C -0.074 4.074 10 Cl -0.031 7.031 11 C -0.097 4.097 12 C -0.149 4.149 13 C 0.075 3.925 14 F -0.117 7.117 15 C -0.174 4.174 16 C 0.122 3.878 17 C -0.488 4.488 18 H 0.091 0.909 19 C -0.175 4.175 20 N -0.405 5.405 21 Si 0.796 3.204 22 H -0.192 1.192 23 H -0.179 1.179 24 H -0.178 1.178 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.154 0.846 28 H 0.193 0.807 29 H 0.193 0.807 30 H 0.140 0.860 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.560 -2.674 -1.401 14.870 hybrid contribution -0.445 0.723 -0.122 0.858 sum 14.115 -1.951 -1.523 14.330 Atomic orbital electron populations 1.80994 1.13139 1.11023 1.15728 1.25966 0.92899 0.90700 0.90751 1.17175 0.83027 0.97658 1.23486 1.20645 0.93866 0.95217 0.94690 1.20352 0.93014 0.97379 1.13601 1.18578 0.90346 0.94125 0.99023 1.19000 0.93180 1.00198 0.94267 1.21038 0.92419 0.98438 0.98080 1.20901 0.91533 1.03019 0.91920 1.98368 1.74791 1.85463 1.44499 1.21223 1.02058 0.96013 0.90359 1.21314 0.90455 1.01999 1.01141 1.18071 0.90814 0.98936 0.84652 1.91492 1.80412 1.85035 1.54766 1.21270 0.93209 0.96538 1.06360 1.18611 0.92036 0.90441 0.86684 1.19850 1.00810 0.91282 1.36849 0.90946 1.26759 0.93700 1.03729 0.93287 1.69687 1.17230 1.29713 1.23873 0.85323 0.79252 0.75937 0.79937 1.19229 1.17853 1.17846 0.85537 0.86264 0.84620 0.80711 0.80684 0.86031 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.98 18.54 19.00 0.35 -25.63 16 2 C 0.31 14.66 14.27 88.33 1.26 15.92 16 3 C -0.21 -9.67 5.95 -19.54 -0.12 -9.79 16 4 C -0.02 -0.96 9.74 22.47 0.22 -0.74 16 5 C -0.22 -8.72 8.78 22.53 0.20 -8.53 16 6 C -0.02 -0.80 5.31 -20.13 -0.11 -0.90 16 7 C -0.07 -2.21 5.45 -20.01 -0.11 -2.32 16 8 C -0.08 -2.42 9.25 22.51 0.21 -2.21 16 9 C -0.05 -1.13 6.31 22.29 0.14 -0.99 16 10 Cl -0.06 -1.30 28.95 -2.72 -0.08 -1.37 16 11 C -0.08 -1.50 9.82 22.33 0.22 -1.28 16 12 C -0.13 -2.75 10.01 22.28 0.22 -2.52 16 13 C 0.09 2.82 7.13 22.60 0.16 2.98 16 14 F -0.14 -4.54 15.84 44.97 0.71 -3.82 16 15 C -0.15 -7.09 8.12 22.94 0.19 -6.90 16 16 C 0.13 6.29 5.74 -19.90 -0.11 6.18 16 17 C -0.46 -23.04 8.58 23.39 0.20 -22.84 16 18 H 0.07 3.72 7.36 -2.91 -0.02 3.70 16 19 C 0.05 2.12 5.14 85.35 0.44 2.56 16 20 N -0.78 -35.90 10.96 21.87 0.24 -35.66 16 21 Si 0.98 35.07 29.60 68.60 2.03 37.10 16 22 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.26 -8.36 7.11 99.48 0.71 -7.66 16 24 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 25 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 26 H 0.12 4.11 7.70 -2.91 -0.02 4.08 16 27 H 0.14 4.17 8.03 -2.92 -0.02 4.15 16 28 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.12 5.71 6.12 -2.91 -0.02 5.69 16 31 H 0.30 12.34 8.30 -92.71 -0.77 11.57 16 Total: -1.00 -55.24 306.51 7.46 -47.77 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.20 Total: 12.99 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 3.01 Total: -31.38 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.59 Total: -61.29 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.71 Total: -3.82 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.37 kcal Total: -55.24 7.46 -47.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241331079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.314 kcal (2) G-P(sol) polarization free energy of solvation -55.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds