Wall clock time and date at job start Tue Mar 31 2020 07:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39753 * 120.07745 * 60.42589 * 3 2 1 5 5 C 1.38198 * 120.13074 * 180.02562 * 4 3 2 6 6 Cl 1.73601 * 119.86012 * 179.74446 * 5 4 3 7 7 C 1.38195 * 120.27816 * 0.02562 * 5 4 3 8 8 C 1.39673 * 120.14319 * 0.02562 * 7 5 4 9 9 C 1.47980 * 120.05937 * 179.97438 * 8 7 5 10 10 C 1.39933 * 119.89199 * 129.70384 * 9 8 7 11 11 C 1.36240 * 120.13968 * 179.71778 * 10 9 8 12 12 C 1.40964 * 119.92897 * 0.55174 * 11 10 9 13 13 C 1.41029 * 120.10666 * 179.74183 * 12 11 10 14 14 H 1.08007 * 119.99704 * 24.68171 * 13 12 11 15 15 C 1.39996 * 120.00249 * 204.68021 * 13 12 11 16 16 N 1.30800 * 120.00118 * 17.96093 * 15 13 12 17 17 Si 1.86804 * 120.00111 * 197.96191 * 15 13 12 18 18 H 1.48495 * 109.47447 * 59.99820 * 17 15 13 19 19 H 1.48499 * 109.47260 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46891 * 299.99663 * 17 15 13 21 21 C 1.40861 * 119.78821 * 359.72015 * 12 11 10 22 22 C 1.36485 * 119.85881 * 0.02562 * 21 12 11 23 23 F 1.35097 * 119.96767 * 179.97438 * 22 21 12 24 24 C 1.39349 * 120.07162 * 240.44631 * 3 2 1 25 25 H 1.07997 * 119.93236 * 0.02562 * 4 3 2 26 26 H 1.07994 * 119.92534 * 179.97438 * 7 5 4 27 27 H 1.08000 * 119.92892 * 359.97308 * 10 9 8 28 28 H 1.07997 * 120.03067 * 180.25187 * 11 10 9 29 29 H 0.97001 * 120.00256 * 179.97438 * 16 15 13 30 30 H 1.08002 * 120.07018 * 180.02562 * 21 12 11 31 31 H 1.08002 * 120.13507 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.5959 -1.0518 5 6 4.6507 -0.5964 -1.0527 6 17 5.5139 -1.3453 -2.3594 7 6 5.3483 -0.0083 -0.0147 8 6 4.6597 0.5903 1.0428 9 6 5.4086 1.2189 2.1535 10 6 5.0931 2.5207 2.5586 11 6 5.7755 3.1022 3.5844 12 6 6.8093 2.3954 4.2315 13 6 7.5217 2.9959 5.2902 14 1 7.0647 3.7844 5.8699 15 6 8.8212 2.5700 5.5898 16 7 9.5062 1.8894 4.7075 17 14 9.5770 2.9735 7.2497 18 1 8.7473 2.3802 8.3289 19 1 10.9511 2.4145 7.3171 20 1 9.6338 4.4474 7.4225 21 6 7.1282 1.0873 3.8176 22 6 6.4356 0.5111 2.7924 23 9 6.7400 -0.7431 2.3933 24 6 3.2660 0.5958 1.0490 25 1 2.7291 -1.0575 -1.8655 26 1 6.4282 -0.0123 -0.0210 27 1 4.3042 3.0640 2.0596 28 1 5.5278 4.1055 3.8982 29 1 10.4067 1.5946 4.9149 30 1 7.9192 0.5415 4.3104 31 1 2.7292 1.0582 1.8641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242568329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:28 Heat of formation + Delta-G solvation = 6.814322 kcal Electronic energy + Delta-G solvation = -20086.710195 eV Core-core repulsion = 16658.517734 eV Total energy + Delta-G solvation = -3428.192461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.85131 -39.45899 -37.57540 -36.72199 -36.12012 -34.15921 -31.95260 -31.01517 -29.32763 -29.05611 -25.69435 -23.91413 -22.71278 -21.16363 -20.79670 -18.48111 -17.85271 -16.32972 -16.02140 -15.72254 -15.17369 -15.00272 -14.80153 -14.45922 -14.32086 -14.08688 -13.26975 -13.15002 -12.96612 -12.91276 -12.81927 -12.32594 -12.07691 -11.84762 -11.59003 -11.46086 -11.25814 -11.16521 -11.03292 -10.75376 -10.57300 -10.20411 -9.91708 -9.53615 -8.85948 -8.72009 -7.73647 -7.52587 -7.12788 -4.73624 0.76727 1.15682 2.05750 2.35053 2.66262 2.70808 2.86025 2.89919 2.92238 3.05938 3.66458 3.83154 3.86813 4.26200 4.83482 5.09999 5.16103 5.25428 5.34517 5.46734 5.66148 5.81293 6.00699 6.16324 6.20211 6.41137 6.57837 6.64988 6.73032 6.77269 6.92816 7.29879 7.41072 7.42726 7.54305 7.65862 7.91440 8.23173 8.47124 8.53526 9.77569 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.020774 B = 0.003741 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.518731 B = 7482.142486 C = 8494.782913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.265 3.735 3 C -0.019 4.019 4 C -0.091 4.091 5 C -0.030 4.030 6 Cl -0.071 7.071 7 C -0.081 4.081 8 C 0.031 3.969 9 C -0.254 4.254 10 C -0.037 4.037 11 C -0.234 4.234 12 C 0.136 3.864 13 C -0.437 4.437 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.768 5.768 17 Si 0.915 3.085 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.210 4.210 22 C 0.139 3.861 23 F -0.161 7.161 24 C -0.072 4.072 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.290 0.710 30 H 0.131 0.869 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.211 -2.422 -5.857 7.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.050 4.050 3 C -0.023 4.023 4 C -0.112 4.112 5 C -0.056 4.056 6 Cl -0.042 7.042 7 C -0.100 4.100 8 C 0.031 3.969 9 C -0.256 4.256 10 C -0.055 4.055 11 C -0.253 4.253 12 C 0.133 3.867 13 C -0.464 4.464 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.390 5.390 17 Si 0.739 3.261 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.186 1.186 21 C -0.230 4.230 22 C 0.120 3.880 23 F -0.139 7.139 24 C -0.093 4.093 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.148 0.852 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.631 -2.643 -6.037 8.055 hybrid contribution 1.118 -0.142 0.447 1.213 sum -3.513 -2.785 -5.590 7.165 Atomic orbital electron populations 1.81226 1.11982 1.08870 1.07982 1.25611 0.92496 0.93411 0.93455 1.15669 0.84136 1.04856 0.97618 1.20801 0.92006 1.00173 0.98228 1.20545 0.91754 1.01393 0.91928 1.98365 1.76933 1.80897 1.48001 1.21549 1.01175 0.96071 0.91244 1.18599 0.91527 0.94044 0.92761 1.17749 1.05403 0.97689 1.04721 1.20158 0.97254 0.92434 0.95682 1.20716 1.03732 0.99963 1.00899 1.17460 0.89622 0.89759 0.89880 1.19747 0.97752 1.16709 1.12225 0.89377 1.26105 0.97318 0.92991 0.98507 1.69782 1.10624 1.25243 1.33387 0.86225 0.78356 0.80147 0.81412 1.18376 1.19954 1.18575 1.20950 1.04299 0.96862 1.00875 1.17302 0.95604 0.78682 0.96423 1.91360 1.92609 1.39612 1.90363 1.21470 0.93670 0.97424 0.96704 0.84654 0.84341 0.88044 0.87945 0.89913 0.85174 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.43 18.54 41.84 0.78 -5.66 16 2 C 0.27 3.58 15.32 -22.47 -0.34 3.24 16 3 C -0.02 -0.25 5.73 -106.99 -0.61 -0.86 16 4 C -0.09 -1.10 9.53 -39.03 -0.37 -1.48 16 5 C -0.03 -0.40 6.31 -39.61 -0.25 -0.65 16 6 Cl -0.07 -0.87 28.94 -51.86 -1.50 -2.37 16 7 C -0.08 -1.25 8.62 -39.06 -0.34 -1.59 16 8 C 0.03 0.51 5.30 -104.95 -0.56 -0.04 16 9 C -0.25 -4.94 5.50 -104.56 -0.57 -5.52 16 10 C -0.04 -0.70 9.43 -39.67 -0.37 -1.08 16 11 C -0.23 -4.91 9.73 -39.27 -0.38 -5.29 16 12 C 0.14 3.19 5.57 -106.81 -0.60 2.59 16 13 C -0.44 -10.13 9.03 -37.87 -0.34 -10.47 16 14 H 0.09 1.92 7.91 -52.48 -0.42 1.50 16 15 C 0.07 1.61 5.13 -17.33 -0.09 1.52 16 16 N -0.77 -17.74 10.96 55.55 0.61 -17.13 16 17 Si 0.92 16.45 29.60 -169.99 -5.03 11.42 16 18 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 21 C -0.21 -4.95 8.60 -39.22 -0.34 -5.29 16 22 C 0.14 3.03 7.10 -39.50 -0.28 2.75 16 23 F -0.16 -3.40 15.85 2.25 0.04 -3.36 16 24 C -0.07 -1.02 9.21 -38.75 -0.36 -1.38 16 25 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 26 H 0.14 2.23 7.76 -52.49 -0.41 1.82 16 27 H 0.10 1.65 8.03 -52.49 -0.42 1.22 16 28 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 29 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 30 H 0.13 3.22 6.16 -52.49 -0.32 2.89 16 31 H 0.14 1.82 8.04 -52.49 -0.42 1.40 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -23.63 307.62 -8.25 -31.88 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -1.97 Total: 4.11 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -5.80 Total: -23.53 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 1.38 Total: -22.78 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -23.63 -8.25 -31.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242568329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.690 kcal (2) G-P(sol) polarization free energy of solvation -23.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds