Wall clock time and date at job start Tue Mar 31 2020 07:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39753 * 120.07745 * 60.42589 * 3 2 1 5 5 C 1.38198 * 120.13074 * 180.02562 * 4 3 2 6 6 Cl 1.73601 * 119.86012 * 179.74446 * 5 4 3 7 7 C 1.38195 * 120.27816 * 0.02562 * 5 4 3 8 8 C 1.39673 * 120.14319 * 0.02562 * 7 5 4 9 9 C 1.47980 * 120.05937 * 179.97438 * 8 7 5 10 10 C 1.39933 * 119.89199 * 129.70384 * 9 8 7 11 11 C 1.36240 * 120.13968 * 179.71778 * 10 9 8 12 12 C 1.40964 * 119.92897 * 0.55174 * 11 10 9 13 13 C 1.41029 * 120.10666 * 179.74183 * 12 11 10 14 14 H 1.08007 * 119.99704 * 24.68171 * 13 12 11 15 15 C 1.39996 * 120.00249 * 204.68021 * 13 12 11 16 16 N 1.30800 * 120.00118 * 17.96093 * 15 13 12 17 17 Si 1.86804 * 120.00111 * 197.96191 * 15 13 12 18 18 H 1.48495 * 109.47447 * 59.99820 * 17 15 13 19 19 H 1.48499 * 109.47260 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46891 * 299.99663 * 17 15 13 21 21 C 1.40861 * 119.78821 * 359.72015 * 12 11 10 22 22 C 1.36485 * 119.85881 * 0.02562 * 21 12 11 23 23 F 1.35097 * 119.96767 * 179.97438 * 22 21 12 24 24 C 1.39349 * 120.07162 * 240.44631 * 3 2 1 25 25 H 1.07997 * 119.93236 * 0.02562 * 4 3 2 26 26 H 1.07994 * 119.92534 * 179.97438 * 7 5 4 27 27 H 1.08000 * 119.92892 * 359.97308 * 10 9 8 28 28 H 1.07997 * 120.03067 * 180.25187 * 11 10 9 29 29 H 0.97001 * 120.00256 * 179.97438 * 16 15 13 30 30 H 1.08002 * 120.07018 * 180.02562 * 21 12 11 31 31 H 1.08002 * 120.13507 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.5959 -1.0518 5 6 4.6507 -0.5964 -1.0527 6 17 5.5139 -1.3453 -2.3594 7 6 5.3483 -0.0083 -0.0147 8 6 4.6597 0.5903 1.0428 9 6 5.4086 1.2189 2.1535 10 6 5.0931 2.5207 2.5586 11 6 5.7755 3.1022 3.5844 12 6 6.8093 2.3954 4.2315 13 6 7.5217 2.9959 5.2902 14 1 7.0647 3.7844 5.8699 15 6 8.8212 2.5700 5.5898 16 7 9.5062 1.8894 4.7075 17 14 9.5770 2.9735 7.2497 18 1 8.7473 2.3802 8.3289 19 1 10.9511 2.4145 7.3171 20 1 9.6338 4.4474 7.4225 21 6 7.1282 1.0873 3.8176 22 6 6.4356 0.5111 2.7924 23 9 6.7400 -0.7431 2.3933 24 6 3.2660 0.5958 1.0490 25 1 2.7291 -1.0575 -1.8655 26 1 6.4282 -0.0123 -0.0210 27 1 4.3042 3.0640 2.0596 28 1 5.5278 4.1055 3.8982 29 1 10.4067 1.5946 4.9149 30 1 7.9192 0.5415 4.3104 31 1 2.7292 1.0582 1.8641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242568329.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:27 Heat of formation + Delta-G solvation = -0.582838 kcal Electronic energy + Delta-G solvation = -20087.030959 eV Core-core repulsion = 16658.517734 eV Total energy + Delta-G solvation = -3428.513226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.55684 -40.66630 -39.14030 -37.80527 -37.25893 -35.73627 -33.33173 -32.18548 -30.98810 -30.54571 -27.24815 -25.09508 -24.09350 -22.77529 -22.24125 -19.75312 -19.49132 -17.74787 -17.40788 -17.01338 -16.58223 -16.44059 -16.41322 -16.01365 -15.64704 -15.22092 -14.79677 -14.41916 -14.28735 -14.07828 -14.01867 -13.92370 -13.55324 -13.28940 -12.90637 -12.79632 -12.67321 -12.39061 -12.33397 -12.10728 -11.97927 -11.79760 -11.50153 -11.11269 -10.15810 -9.84751 -9.39851 -9.11930 -8.75004 -6.45348 -0.37111 -0.01304 0.78220 1.00357 1.03238 1.40437 1.49551 1.53449 1.57583 1.83359 2.16944 2.56317 2.71015 2.80481 3.57108 3.69796 3.79125 3.98516 3.99857 4.19317 4.36847 4.50324 4.63876 4.84775 5.00206 5.02241 5.03649 5.11828 5.21429 5.38895 5.48476 5.65723 5.77288 5.90687 5.98429 6.24251 6.35199 6.54305 6.78708 6.85326 8.18141 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.020774 B = 0.003741 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.518731 B = 7482.142486 C = 8494.782913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.286 3.714 3 C -0.012 4.012 4 C -0.066 4.066 5 C -0.031 4.031 6 Cl -0.057 7.057 7 C -0.083 4.083 8 C 0.005 3.995 9 C -0.236 4.236 10 C -0.034 4.034 11 C -0.242 4.242 12 C 0.110 3.890 13 C -0.475 4.475 14 H 0.092 0.908 15 C 0.036 3.964 16 N -0.807 5.807 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.254 1.254 21 C -0.236 4.236 22 C 0.124 3.876 23 F -0.161 7.161 24 C -0.059 4.059 25 H 0.165 0.835 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.294 0.706 30 H 0.108 0.892 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 -2.471 -7.130 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.029 4.029 3 C -0.015 4.015 4 C -0.087 4.087 5 C -0.058 4.058 6 Cl -0.028 7.028 7 C -0.103 4.103 8 C 0.005 3.995 9 C -0.238 4.238 10 C -0.052 4.052 11 C -0.261 4.261 12 C 0.107 3.893 13 C -0.502 4.502 14 H 0.111 0.889 15 C -0.182 4.182 16 N -0.431 5.431 17 Si 0.804 3.196 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.178 1.178 21 C -0.256 4.256 22 C 0.105 3.895 23 F -0.140 7.140 24 C -0.080 4.080 25 H 0.183 0.817 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.322 -2.693 -7.325 10.044 hybrid contribution 1.480 -0.243 0.584 1.609 sum -4.842 -2.936 -6.741 8.804 Atomic orbital electron populations 1.81272 1.12726 1.09702 1.08775 1.25436 0.92163 0.92620 0.92680 1.15541 0.83771 1.04745 0.97471 1.21108 0.91458 0.97956 0.98157 1.20504 0.92242 1.01263 0.91811 1.98377 1.76831 1.80551 1.47083 1.21469 1.00758 0.96178 0.91879 1.18401 0.92333 0.96178 0.92621 1.18041 1.03874 0.97525 1.04347 1.20526 0.97510 0.92275 0.94934 1.20964 1.03313 1.00539 1.01287 1.17775 0.90842 0.89984 0.90748 1.20003 0.98788 1.18017 1.13438 0.88950 1.26900 0.97339 0.92458 1.01536 1.69844 1.11166 1.26845 1.35202 0.85204 0.77453 0.80092 0.76846 1.18326 1.19431 1.17812 1.20881 1.04975 0.97486 1.02244 1.17509 0.96482 0.78956 0.96542 1.91344 1.92746 1.39607 1.90317 1.21480 0.92610 0.96700 0.97202 0.81744 0.85646 0.84442 0.86622 0.89531 0.87404 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.29 18.54 19.00 0.35 -11.94 16 2 C 0.29 6.72 15.32 88.33 1.35 8.07 16 3 C -0.01 -0.26 5.73 -21.40 -0.12 -0.38 16 4 C -0.07 -1.34 9.53 22.63 0.22 -1.12 16 5 C -0.03 -0.75 6.31 22.25 0.14 -0.61 16 6 Cl -0.06 -1.26 28.94 -2.72 -0.08 -1.34 16 7 C -0.08 -2.43 8.62 22.61 0.19 -2.24 16 8 C 0.01 0.16 5.30 -20.07 -0.11 0.05 16 9 C -0.24 -9.04 5.50 -19.82 -0.11 -9.15 16 10 C -0.03 -1.27 9.43 22.21 0.21 -1.06 16 11 C -0.24 -10.18 9.73 22.47 0.22 -9.96 16 12 C 0.11 5.33 5.57 -21.28 -0.12 5.21 16 13 C -0.48 -22.90 9.03 23.38 0.21 -22.69 16 14 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 15 C 0.04 1.64 5.13 85.27 0.44 2.08 16 16 N -0.81 -39.16 10.96 21.84 0.24 -38.92 16 17 Si 0.98 34.50 29.60 68.60 2.03 36.53 16 18 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 19 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 21 C -0.24 -11.68 8.60 22.50 0.19 -11.49 16 22 C 0.12 5.55 7.10 22.32 0.16 5.71 16 23 F -0.16 -6.99 15.85 44.97 0.71 -6.28 16 24 C -0.06 -1.51 9.21 22.81 0.21 -1.30 16 25 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 26 H 0.13 3.98 7.76 -2.91 -0.02 3.96 16 27 H 0.14 4.03 8.03 -2.91 -0.02 4.01 16 28 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.29 12.91 8.30 -92.71 -0.77 12.15 16 30 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 31 H 0.15 3.44 8.04 -2.91 -0.02 3.41 16 Total: -1.00 -52.57 307.62 7.54 -45.03 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.19 Total: 15.78 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.09 Total: -38.86 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.59 Total: -50.86 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.71 Total: -6.28 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -52.57 7.54 -45.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242568329.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.448 kcal (2) G-P(sol) polarization free energy of solvation -52.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds