Wall clock time and date at job start Tue Mar 31 2020 08:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86790 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47332 * 239.99861 * 3 2 1 5 5 H 1.48505 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47379 * 120.00162 * 3 2 1 7 7 C 1.39882 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99478 * 163.49710 * 7 2 1 9 9 C 1.41382 * 120.00116 * 343.50035 * 7 2 1 10 10 C 1.40838 * 120.56173 * 155.69184 * 9 7 2 11 11 N 1.31512 * 120.75691 * 180.02562 * 10 9 7 12 12 C 1.32126 * 122.10407 * 359.70326 * 11 10 9 13 13 F 1.35104 * 119.48210 * 180.31240 * 12 11 10 14 14 C 1.40310 * 121.04332 * 0.59471 * 12 11 10 15 15 C 1.47782 * 120.44468 * 179.69859 * 14 12 11 16 16 C 1.35457 * 125.08213 * 309.73917 * 15 14 12 17 17 C 1.46483 * 106.09441 * 180.02562 * 16 15 14 18 18 C 1.39596 * 134.15911 * 179.97438 * 17 16 15 19 19 C 1.37893 * 119.57274 * 180.02562 * 18 17 16 20 20 F 1.35102 * 119.88475 * 180.02562 * 19 18 17 21 21 C 1.38964 * 120.22023 * 0.02645 * 19 18 17 22 22 C 1.37851 * 120.69861 * 0.23265 * 21 19 18 23 23 C 1.38881 * 120.02242 * 359.48782 * 22 21 19 24 24 O 1.34754 * 125.08367 * 129.74708 * 15 14 12 25 25 C 1.39264 * 119.10894 * 359.41910 * 14 12 11 26 26 H 0.97000 * 120.00014 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.62114 * 0.02562 * 10 9 7 28 28 H 1.07996 * 126.95325 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.21343 * 0.02562 * 18 17 16 30 30 H 1.07999 * 119.65058 * 179.97438 * 21 19 18 31 31 H 1.08001 * 119.98484 * 179.72263 * 22 21 19 32 32 H 1.07998 * 120.94993 * 180.30100 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0081 -1.2114 0.0005 8 1 3.0547 -1.2308 -0.2652 9 6 1.3448 -2.4105 0.3488 10 6 1.8235 -3.6530 -0.1101 11 7 1.2092 -4.7706 0.2111 12 6 0.1308 -4.7848 0.9744 13 9 -0.4544 -5.9644 1.2765 14 6 -0.4197 -3.5937 1.4713 15 6 -1.6301 -3.6245 2.3185 16 6 -2.7749 -4.2828 2.0169 17 6 -3.6917 -4.0351 3.1323 18 6 -5.0005 -4.4257 3.4205 19 6 -5.5930 -4.0072 4.5932 20 9 -6.8593 -4.3819 4.8786 21 6 -4.8921 -3.2013 5.4822 22 6 -3.6011 -2.8053 5.2053 23 6 -2.9833 -3.2202 4.0327 24 8 -1.7601 -3.0019 3.5065 25 6 0.1934 -2.3826 1.1603 26 1 -0.4850 0.8400 -0.0004 27 1 2.7051 -3.6884 -0.7330 28 1 -2.9722 -4.8705 1.1327 29 1 -5.5455 -5.0516 2.7294 30 1 -5.3652 -2.8785 6.3978 31 1 -3.0685 -2.1752 5.9023 32 1 -0.2023 -1.4485 1.5309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242705830.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:40 Heat of formation + Delta-G solvation = -49.294779 kcal Electronic energy + Delta-G solvation = -22703.418661 eV Core-core repulsion = 18844.456752 eV Total energy + Delta-G solvation = -3858.961909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.065 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.93538 -49.53892 -43.51739 -40.24386 -38.66059 -36.10705 -34.52745 -33.12894 -32.21755 -31.09916 -29.56122 -27.48339 -25.19005 -24.20590 -23.51837 -22.91339 -22.21705 -19.58167 -18.85299 -18.68048 -18.48088 -17.92427 -17.57568 -17.21099 -16.78049 -16.61756 -16.46686 -16.18056 -15.36525 -15.17740 -14.70398 -14.45241 -14.33740 -14.16061 -14.03840 -13.78799 -13.73790 -13.65332 -13.17617 -12.97229 -12.85701 -12.39432 -12.08648 -11.94624 -11.44618 -11.27907 -10.60562 -10.45675 -9.81914 -9.53028 -9.11872 -8.86165 -6.57884 -0.47164 0.02768 0.24415 0.66005 1.24453 1.41210 1.48501 1.54960 1.62342 2.14520 2.41824 2.50592 2.94281 3.12574 3.34386 3.37579 3.51902 3.85622 3.94085 4.04556 4.12011 4.26563 4.47215 4.51452 4.68661 4.77081 4.82414 4.96250 4.97931 5.05817 5.06487 5.23333 5.39946 5.57727 5.59767 5.77336 6.01069 6.23948 6.49283 6.56170 7.19251 8.08445 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.016753 B = 0.004232 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.905113 B = 6614.112098 C = 7908.102528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.449 4.449 8 H 0.107 0.893 9 C 0.034 3.966 10 C 0.013 3.987 11 N -0.492 5.492 12 C 0.152 3.848 13 F -0.139 7.139 14 C -0.083 4.083 15 C 0.090 3.910 16 C -0.195 4.195 17 C -0.113 4.113 18 C -0.112 4.112 19 C 0.080 3.920 20 F -0.136 7.136 21 C -0.114 4.114 22 C -0.072 4.072 23 C 0.018 3.982 24 O -0.200 6.200 25 C -0.103 4.103 26 H 0.298 0.702 27 H 0.168 0.832 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.186 0.814 31 H 0.170 0.830 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 1.145 7.829 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.477 4.477 8 H 0.125 0.875 9 C 0.029 3.971 10 C -0.149 4.149 11 N -0.204 5.204 12 C -0.001 4.001 13 F -0.118 7.118 14 C -0.087 4.087 15 C 0.042 3.958 16 C -0.214 4.214 17 C -0.114 4.114 18 C -0.131 4.131 19 C 0.061 3.939 20 F -0.114 7.114 21 C -0.132 4.132 22 C -0.090 4.090 23 C -0.029 4.029 24 O -0.102 6.102 25 C -0.128 4.128 26 H 0.109 0.891 27 H 0.185 0.815 28 H 0.183 0.817 29 H 0.173 0.827 30 H 0.203 0.797 31 H 0.187 0.813 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.085 0.590 7.671 10.459 hybrid contribution -0.405 0.793 -0.087 0.894 sum -7.490 1.383 7.584 10.748 Atomic orbital electron populations 1.69807 1.09456 1.32012 1.31901 1.26991 0.95494 1.05301 0.90644 0.85056 0.78661 0.74411 0.80669 1.17499 1.19492 1.18047 1.20008 0.98897 0.90710 1.38055 0.87481 1.18789 0.92437 0.95046 0.90803 1.22784 1.02429 0.85937 1.03797 1.66369 1.07507 1.33993 1.12556 1.17447 0.95964 0.79438 1.07259 1.91416 1.82571 1.45838 1.92012 1.18343 0.95336 0.94024 1.01016 1.20294 0.95328 0.95517 0.84682 1.22564 0.91845 1.05958 1.01065 1.19680 0.95445 1.01086 0.95202 1.20575 0.92966 1.01986 0.97558 1.17429 0.80498 1.00426 0.95592 1.91506 1.36395 1.90040 1.93505 1.21223 0.93096 0.97855 1.01004 1.20138 0.94293 1.01341 0.93267 1.20285 0.83817 1.01034 0.97807 1.84046 1.32401 1.62656 1.31064 1.21792 0.97514 0.95230 0.98256 0.89071 0.81473 0.81682 0.82692 0.79713 0.81297 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.60 10.90 21.82 0.24 -37.36 16 2 C 0.03 1.48 5.19 85.23 0.44 1.93 16 3 Si 0.99 32.58 29.59 68.60 2.03 34.61 16 4 H -0.25 -7.86 7.11 99.48 0.71 -7.15 16 5 H -0.27 -8.61 7.11 99.48 0.71 -7.90 16 6 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 7 C -0.45 -20.62 9.08 23.44 0.21 -20.41 16 8 H 0.11 4.45 7.90 -2.91 -0.02 4.43 16 9 C 0.03 1.67 5.59 -21.22 -0.12 1.55 16 10 C 0.01 0.59 10.96 85.38 0.94 1.53 16 11 N -0.49 -24.09 10.33 -193.51 -2.00 -26.09 16 12 C 0.15 7.44 8.37 85.15 0.71 8.15 16 13 F -0.14 -6.45 16.32 44.97 0.73 -5.72 16 14 C -0.08 -4.01 5.78 -20.00 -0.12 -4.12 16 15 C 0.09 3.91 6.46 24.15 0.16 4.06 16 16 C -0.20 -7.51 10.36 23.78 0.25 -7.26 16 17 C -0.11 -3.78 6.38 -20.23 -0.13 -3.91 16 18 C -0.11 -3.01 10.08 22.52 0.23 -2.78 16 19 C 0.08 1.86 7.29 22.36 0.16 2.03 16 20 F -0.14 -3.04 17.26 44.97 0.78 -2.27 16 21 C -0.11 -2.23 9.99 22.35 0.22 -2.01 16 22 C -0.07 -1.72 10.06 22.33 0.22 -1.50 16 23 C 0.02 0.60 7.40 23.00 0.17 0.77 16 24 O -0.20 -8.19 10.60 -13.24 -0.14 -8.33 16 25 C -0.10 -5.15 8.55 23.17 0.20 -4.95 16 26 H 0.30 12.54 8.30 -92.71 -0.77 11.77 16 27 H 0.17 6.73 8.06 -2.91 -0.02 6.71 16 28 H 0.17 5.93 8.06 -2.91 -0.02 5.90 16 29 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 32 H 0.13 6.75 6.20 -2.91 -0.02 6.73 16 Total: -1.00 -56.92 300.55 6.38 -50.54 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 1.19 Total: 21.55 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.55 Total: -26.92 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -1.76 Total: -63.45 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.14 Total: -8.33 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 1.51 Total: -7.99 kcal Atomic # 14 Polarization: 32.58 SS G_CDS: 2.03 Total: 34.61 kcal Total: -56.92 6.38 -50.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242705830.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.244 kcal (2) G-P(sol) polarization free energy of solvation -56.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds