Wall clock time and date at job start Tue Mar 31 2020 08:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39039 * 120.56435 * 337.70914 * 3 2 1 5 5 C 1.39461 * 119.80000 * 180.23154 * 4 3 2 6 6 C 1.47860 * 119.51101 * 179.77618 * 5 4 3 7 7 C 1.39709 * 120.09867 * 129.97808 * 6 5 4 8 8 C 1.37761 * 119.97356 * 180.02562 * 7 6 5 9 9 C 1.38975 * 120.16066 * 359.97414 * 8 7 6 10 10 O 1.35852 * 119.89988 * 179.97438 * 9 8 7 11 11 C 1.39029 * 120.19245 * 0.03061 * 9 8 7 12 12 F 1.35104 * 119.98285 * 179.97438 * 11 9 8 13 13 C 1.38203 * 120.02899 * 359.71363 * 11 9 8 14 14 F 1.35102 * 120.08501 * 180.30230 * 13 11 9 15 15 C 1.40063 * 120.98907 * 359.75991 * 5 4 3 16 16 C 1.35957 * 121.18241 * 0.02562 * 15 5 4 17 17 C 1.41076 * 120.11649 * 359.95911 * 16 15 5 18 18 C 1.40394 * 120.48075 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99685 * 208.78025 * 18 17 16 20 20 C 1.40261 * 120.00388 * 28.77648 * 18 17 16 21 21 N 1.30651 * 120.00429 * 197.55908 * 20 18 17 22 22 Si 1.86808 * 119.99646 * 17.56096 * 20 18 17 23 23 H 1.48495 * 109.46997 * 269.99841 * 22 20 18 24 24 H 1.48504 * 109.47121 * 30.00330 * 22 20 18 25 25 H 1.48499 * 109.46722 * 149.99783 * 22 20 18 26 26 H 1.08005 * 120.10098 * 359.97188 * 4 3 2 27 27 H 1.08009 * 120.00980 * 359.97438 * 7 6 5 28 28 H 1.07995 * 119.91385 * 180.02562 * 8 7 6 29 29 H 0.96697 * 114.00192 * 90.00700 * 10 9 8 30 30 H 1.07995 * 119.41473 * 180.02562 * 15 5 4 31 31 H 1.08001 * 119.94223 * 179.97438 * 16 15 5 32 32 H 0.96999 * 120.00080 * 355.45774 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -1.1068 0.4541 5 6 4.6700 -1.0871 0.4516 6 6 5.4159 -2.2664 0.9406 7 6 6.4433 -2.8149 0.1689 8 6 7.1363 -3.9140 0.6268 9 6 6.8164 -4.4790 1.8555 10 8 7.5029 -5.5631 2.3016 11 6 5.7952 -3.9387 2.6289 12 9 5.4875 -4.4917 3.8225 13 6 5.0984 -2.8330 2.1796 14 9 4.1099 -2.3034 2.9330 15 6 5.3746 0.0330 -0.0076 16 6 4.7234 1.1356 -0.4644 17 6 3.3132 1.1676 -0.4836 18 6 2.6329 2.3020 -0.9542 19 1 1.6524 2.5417 -0.5701 20 6 3.2267 3.1242 -1.9231 21 7 2.7787 4.3364 -2.1149 22 14 4.6583 2.4858 -2.9394 23 1 5.9347 2.8002 -2.2487 24 1 4.5327 1.0151 -3.1024 25 1 4.6453 3.1347 -4.2750 26 1 2.7468 -1.9780 0.8117 27 1 6.6936 -2.3779 -0.7866 28 1 7.9306 -4.3370 0.0297 29 1 8.2845 -5.3447 2.8274 30 1 6.4544 0.0206 0.0014 31 1 5.2868 1.9884 -0.8134 32 1 1.9945 4.6452 -1.6347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243342701.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:46 Heat of formation + Delta-G solvation = -71.940599 kcal Electronic energy + Delta-G solvation = -22726.291006 eV Core-core repulsion = 18866.347101 eV Total energy + Delta-G solvation = -3859.943906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.065 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.29237 -48.33929 -39.55183 -38.23595 -36.67889 -35.31198 -34.33154 -31.64428 -30.60064 -30.21170 -28.83522 -25.45752 -23.22960 -22.65235 -22.15269 -21.15574 -18.89567 -18.65708 -18.12888 -17.39309 -16.63171 -16.46222 -15.88361 -15.27996 -15.02943 -14.79820 -14.62790 -14.40165 -14.33566 -13.96569 -13.59164 -13.32176 -12.96541 -12.74703 -12.37614 -12.18304 -12.12297 -11.76055 -11.62256 -11.37132 -11.12618 -10.98304 -10.82843 -10.54700 -10.22195 -9.86728 -9.44853 -8.81947 -8.74859 -8.14848 -8.01001 -7.62990 -5.07324 0.81533 0.97237 1.84802 2.25709 2.91078 3.08134 3.24371 3.32709 3.60258 3.65449 3.68868 3.87312 4.14900 4.27055 4.51377 4.72205 4.83481 5.00214 5.05913 5.21885 5.56524 5.62756 5.68403 5.87985 5.98916 6.07450 6.24636 6.31757 6.38446 6.64899 6.82014 6.94831 7.06640 7.16967 7.32406 7.38148 7.42695 7.83618 7.93431 8.17660 8.57694 9.43389 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.004371 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.562915 B = 6404.814916 C = 7391.961831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.296 3.704 3 C -0.174 4.174 4 C 0.022 3.978 5 C -0.226 4.226 6 C 0.003 3.997 7 C -0.093 4.093 8 C -0.120 4.120 9 C 0.071 3.929 10 O -0.486 6.486 11 C 0.043 3.957 12 F -0.129 7.129 13 C 0.069 3.931 14 F -0.121 7.121 15 C -0.017 4.017 16 C -0.243 4.243 17 C 0.134 3.866 18 C -0.459 4.459 19 H 0.087 0.913 20 C 0.038 3.962 21 N -0.770 5.770 22 Si 1.074 2.926 23 H -0.268 1.268 24 H -0.253 1.253 25 H -0.283 1.283 26 H 0.105 0.895 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.389 0.611 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.093 -10.020 2.615 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.015 4.015 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.227 4.227 6 C 0.001 3.999 7 C -0.111 4.111 8 C -0.139 4.139 9 C 0.026 3.974 10 O -0.295 6.295 11 C 0.022 3.978 12 F -0.107 7.107 13 C 0.048 3.952 14 F -0.099 7.099 15 C -0.036 4.036 16 C -0.262 4.262 17 C 0.128 3.872 18 C -0.485 4.485 19 H 0.105 0.895 20 C -0.187 4.187 21 N -0.389 5.389 22 Si 0.897 3.103 23 H -0.194 1.194 24 H -0.177 1.177 25 H -0.210 1.210 26 H 0.123 0.877 27 H 0.163 0.837 28 H 0.159 0.841 29 H 0.245 0.755 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.813 -9.771 1.255 15.382 hybrid contribution -0.766 -0.020 2.068 2.205 sum 11.047 -9.791 3.322 15.130 Atomic orbital electron populations 1.81051 1.12588 1.10003 1.13647 1.25645 0.92609 0.91768 0.91479 1.16682 0.83458 0.96909 1.20891 1.20629 0.92509 0.94954 0.91805 1.17436 0.91755 0.94985 1.18537 1.18895 0.95411 0.95155 0.90388 1.21190 0.94941 0.95020 0.99992 1.21259 1.01267 0.96072 0.95282 1.18136 0.94964 0.90427 0.93912 1.84857 1.43587 1.28289 1.72809 1.18008 1.00544 0.95218 0.84005 1.91492 1.92313 1.84412 1.42507 1.17738 0.91091 0.94750 0.91585 1.91535 1.58385 1.85211 1.74778 1.20330 0.97973 0.91703 0.93598 1.20722 0.93726 0.99746 1.11975 1.18558 0.91257 0.89544 0.87850 1.20998 1.04623 1.05444 1.17413 0.89547 1.27787 1.02649 0.91918 0.96343 1.70446 1.18563 1.14028 1.35832 0.83600 0.73502 0.77971 0.75215 1.19403 1.17710 1.21003 0.87680 0.83707 0.84097 0.75486 0.87642 0.86437 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.77 18.54 41.84 0.78 -10.99 16 2 C 0.30 6.76 14.34 -22.47 -0.32 6.44 16 3 C -0.17 -3.76 5.93 -104.28 -0.62 -4.38 16 4 C 0.02 0.43 8.54 -38.83 -0.33 0.09 16 5 C -0.23 -3.95 5.33 -104.82 -0.56 -4.51 16 6 C 0.00 0.04 5.45 -104.79 -0.57 -0.53 16 7 C -0.09 -1.10 9.45 -39.21 -0.37 -1.47 16 8 C -0.12 -1.25 9.97 -39.48 -0.39 -1.64 16 9 C 0.07 0.86 6.72 -39.02 -0.26 0.59 16 10 O -0.49 -5.04 13.35 -19.28 -0.26 -5.29 16 11 C 0.04 0.62 7.31 -39.30 -0.29 0.33 16 12 F -0.13 -1.96 17.01 2.25 0.04 -1.93 16 13 C 0.07 1.08 7.14 -38.97 -0.28 0.80 16 14 F -0.12 -2.13 15.78 2.25 0.04 -2.10 16 15 C -0.02 -0.29 9.34 -39.72 -0.37 -0.67 16 16 C -0.24 -4.76 7.20 -39.32 -0.28 -5.05 16 17 C 0.13 2.96 5.30 -104.61 -0.55 2.41 16 18 C -0.46 -10.87 8.89 -38.01 -0.34 -11.20 16 19 H 0.09 2.21 7.61 -52.49 -0.40 1.81 16 20 C 0.04 0.87 5.42 -17.29 -0.09 0.77 16 21 N -0.77 -18.07 13.64 55.56 0.76 -17.32 16 22 Si 1.07 20.18 24.90 -169.99 -4.23 15.95 16 23 H -0.27 -4.58 6.44 56.52 0.36 -4.22 16 24 H -0.25 -4.63 7.02 56.52 0.40 -4.23 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 26 H 0.11 1.91 7.75 -52.48 -0.41 1.51 16 27 H 0.15 1.44 8.03 -52.48 -0.42 1.02 16 28 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.39 2.07 9.06 45.56 0.41 2.48 16 30 H 0.11 1.47 7.99 -52.49 -0.42 1.05 16 31 H 0.12 2.21 4.39 -52.49 -0.23 1.98 16 32 H 0.30 6.81 8.72 -40.82 -0.36 6.46 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -26.44 301.76 -5.05 -31.49 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -1.08 Total: 3.64 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -5.63 Total: -18.00 kcal Atomic # 7 Polarization: -29.84 SS G_CDS: 1.53 Total: -28.31 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.26 Total: -5.29 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.02 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.23 Total: 15.95 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.44 -5.05 -31.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243342701.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.452 kcal (2) G-P(sol) polarization free energy of solvation -26.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds