Wall clock time and date at job start Tue Mar 31 2020 08:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39039 * 120.56435 * 337.70914 * 3 2 1 5 5 C 1.39461 * 119.80000 * 180.23154 * 4 3 2 6 6 C 1.47860 * 119.51101 * 179.77618 * 5 4 3 7 7 C 1.39709 * 120.09867 * 129.97808 * 6 5 4 8 8 C 1.37761 * 119.97356 * 180.02562 * 7 6 5 9 9 C 1.38975 * 120.16066 * 359.97414 * 8 7 6 10 10 O 1.35852 * 119.89988 * 179.97438 * 9 8 7 11 11 C 1.39029 * 120.19245 * 0.03061 * 9 8 7 12 12 F 1.35104 * 119.98285 * 179.97438 * 11 9 8 13 13 C 1.38203 * 120.02899 * 359.71363 * 11 9 8 14 14 F 1.35102 * 120.08501 * 180.30230 * 13 11 9 15 15 C 1.40063 * 120.98907 * 359.75991 * 5 4 3 16 16 C 1.35957 * 121.18241 * 0.02562 * 15 5 4 17 17 C 1.41076 * 120.11649 * 359.95911 * 16 15 5 18 18 C 1.40394 * 120.48075 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99685 * 208.78025 * 18 17 16 20 20 C 1.40261 * 120.00388 * 28.77648 * 18 17 16 21 21 N 1.30651 * 120.00429 * 197.55908 * 20 18 17 22 22 Si 1.86808 * 119.99646 * 17.56096 * 20 18 17 23 23 H 1.48495 * 109.46997 * 269.99841 * 22 20 18 24 24 H 1.48504 * 109.47121 * 30.00330 * 22 20 18 25 25 H 1.48499 * 109.46722 * 149.99783 * 22 20 18 26 26 H 1.08005 * 120.10098 * 359.97188 * 4 3 2 27 27 H 1.08009 * 120.00980 * 359.97438 * 7 6 5 28 28 H 1.07995 * 119.91385 * 180.02562 * 8 7 6 29 29 H 0.96697 * 114.00192 * 90.00700 * 10 9 8 30 30 H 1.07995 * 119.41473 * 180.02562 * 15 5 4 31 31 H 1.08001 * 119.94223 * 179.97438 * 16 15 5 32 32 H 0.96999 * 120.00080 * 355.45774 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -1.1068 0.4541 5 6 4.6700 -1.0871 0.4516 6 6 5.4159 -2.2664 0.9406 7 6 6.4433 -2.8149 0.1689 8 6 7.1363 -3.9140 0.6268 9 6 6.8164 -4.4790 1.8555 10 8 7.5029 -5.5631 2.3016 11 6 5.7952 -3.9387 2.6289 12 9 5.4875 -4.4917 3.8225 13 6 5.0984 -2.8330 2.1796 14 9 4.1099 -2.3034 2.9330 15 6 5.3746 0.0330 -0.0076 16 6 4.7234 1.1356 -0.4644 17 6 3.3132 1.1676 -0.4836 18 6 2.6329 2.3020 -0.9542 19 1 1.6524 2.5417 -0.5701 20 6 3.2267 3.1242 -1.9231 21 7 2.7787 4.3364 -2.1149 22 14 4.6583 2.4858 -2.9394 23 1 5.9347 2.8002 -2.2487 24 1 4.5327 1.0151 -3.1024 25 1 4.6453 3.1347 -4.2750 26 1 2.7468 -1.9780 0.8117 27 1 6.6936 -2.3779 -0.7866 28 1 7.9306 -4.3370 0.0297 29 1 8.2845 -5.3447 2.8274 30 1 6.4544 0.0206 0.0014 31 1 5.2868 1.9884 -0.8134 32 1 1.9945 4.6452 -1.6347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243342701.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:40 Heat of formation + Delta-G solvation = -87.577286 kcal Electronic energy + Delta-G solvation = -22726.969064 eV Core-core repulsion = 18866.347101 eV Total energy + Delta-G solvation = -3860.621963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.065 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -50.45563 -49.53766 -40.61044 -39.64045 -37.77837 -37.06158 -35.89851 -33.06424 -32.07981 -31.30801 -30.12257 -26.90854 -24.54329 -23.84011 -23.45800 -22.66015 -20.30677 -19.82866 -19.45819 -18.52763 -17.77740 -17.62374 -17.05715 -16.71014 -16.48134 -16.01612 -15.90963 -15.71801 -15.55816 -15.17796 -14.99356 -14.59944 -14.49794 -14.30527 -13.92331 -13.74254 -13.48840 -13.12306 -12.89674 -12.86073 -12.47478 -12.33442 -12.03029 -11.80786 -11.71276 -11.46881 -10.93205 -10.09883 -9.77752 -9.68983 -9.60922 -9.13115 -6.79606 -0.22854 -0.04148 0.22969 0.76634 1.42669 1.61875 1.83152 1.85933 2.11472 2.19669 2.37577 2.56144 2.67677 3.23065 3.35092 3.40131 3.45320 3.68945 3.93764 4.07571 4.09481 4.41442 4.64142 4.74203 4.78217 4.81912 5.04783 5.13606 5.16889 5.23223 5.31168 5.47287 5.57192 5.74121 5.79764 5.85255 6.12966 6.33707 6.53819 6.73142 6.77434 7.72135 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.004371 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.562915 B = 6404.814916 C = 7391.961831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.299 3.701 3 C -0.197 4.197 4 C 0.012 3.988 5 C -0.196 4.196 6 C -0.024 4.024 7 C -0.071 4.071 8 C -0.103 4.103 9 C 0.094 3.906 10 O -0.492 6.492 11 C 0.019 3.981 12 F -0.141 7.141 13 C 0.051 3.949 14 F -0.143 7.143 15 C -0.005 4.005 16 C -0.247 4.247 17 C 0.129 3.871 18 C -0.505 4.505 19 H 0.043 0.957 20 C 0.012 3.988 21 N -0.804 5.804 22 Si 1.099 2.901 23 H -0.230 1.230 24 H -0.243 1.243 25 H -0.284 1.284 26 H 0.109 0.891 27 H 0.176 0.824 28 H 0.183 0.817 29 H 0.415 0.585 30 H 0.156 0.844 31 H 0.131 0.869 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.199 -13.024 2.075 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.011 4.011 3 C -0.202 4.202 4 C -0.009 4.009 5 C -0.197 4.197 6 C -0.026 4.026 7 C -0.089 4.089 8 C -0.121 4.121 9 C 0.048 3.952 10 O -0.306 6.306 11 C -0.002 4.002 12 F -0.120 7.120 13 C 0.031 3.969 14 F -0.121 7.121 15 C -0.023 4.023 16 C -0.266 4.266 17 C 0.124 3.876 18 C -0.532 4.532 19 H 0.061 0.939 20 C -0.206 4.206 21 N -0.424 5.424 22 Si 0.915 3.085 23 H -0.154 1.154 24 H -0.167 1.167 25 H -0.211 1.211 26 H 0.127 0.873 27 H 0.193 0.807 28 H 0.201 0.799 29 H 0.276 0.724 30 H 0.173 0.827 31 H 0.148 0.852 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.933 -12.785 0.759 21.232 hybrid contribution -2.154 0.482 2.449 3.297 sum 14.779 -12.303 3.209 19.496 Atomic orbital electron populations 1.81009 1.13429 1.11035 1.14999 1.26104 0.93192 0.90962 0.90810 1.16957 0.82801 0.98067 1.22419 1.20794 0.93750 0.94324 0.91992 1.17806 0.91041 0.95954 1.14896 1.18817 0.97335 0.95382 0.91017 1.21520 0.92539 0.94662 1.00157 1.21645 1.01266 0.94810 0.94341 1.18331 0.93536 0.89504 0.93812 1.84797 1.44743 1.27745 1.73319 1.18292 1.01868 0.95687 0.84349 1.91458 1.92613 1.84572 1.43317 1.18029 0.91145 0.95575 0.92184 1.91481 1.59488 1.85670 1.75489 1.20816 1.00424 0.89980 0.91101 1.20933 0.92317 1.01207 1.12119 1.18754 0.92809 0.88758 0.87328 1.20807 1.03799 1.08092 1.20529 0.93918 1.28972 1.04192 0.91268 0.96158 1.70531 1.19361 1.15153 1.37348 0.83421 0.72758 0.78015 0.74313 1.15396 1.16666 1.21103 0.87263 0.80694 0.79929 0.72435 0.82673 0.85186 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.48 18.54 19.00 0.35 -26.13 16 2 C 0.30 14.41 14.34 88.33 1.27 15.68 16 3 C -0.20 -8.69 5.93 -19.64 -0.12 -8.81 16 4 C 0.01 0.46 8.54 22.76 0.19 0.66 16 5 C -0.20 -6.19 5.33 -19.99 -0.11 -6.29 16 6 C -0.02 -0.63 5.45 -19.97 -0.11 -0.74 16 7 C -0.07 -1.20 9.45 22.51 0.21 -0.99 16 8 C -0.10 -1.41 9.97 22.33 0.22 -1.19 16 9 C 0.09 1.77 6.72 22.64 0.15 1.93 16 10 O -0.49 -7.64 13.35 -91.89 -1.23 -8.87 16 11 C 0.02 0.48 7.31 22.45 0.16 0.65 16 12 F -0.14 -4.08 17.01 44.97 0.77 -3.32 16 13 C 0.05 1.48 7.14 22.66 0.16 1.64 16 14 F -0.14 -4.98 15.78 44.97 0.71 -4.27 16 15 C 0.00 -0.14 9.34 22.18 0.21 0.07 16 16 C -0.25 -9.05 7.20 22.44 0.16 -8.89 16 17 C 0.13 5.78 5.30 -19.86 -0.11 5.68 16 18 C -0.51 -25.46 8.89 23.29 0.21 -25.25 16 19 H 0.04 2.43 7.61 -2.91 -0.02 2.41 16 20 C 0.01 0.58 5.42 85.36 0.46 1.04 16 21 N -0.80 -40.09 13.64 21.88 0.30 -39.79 16 22 Si 1.10 39.13 24.90 68.60 1.71 40.84 16 23 H -0.23 -6.78 6.44 99.48 0.64 -6.14 16 24 H -0.24 -8.18 7.02 99.48 0.70 -7.48 16 25 H -0.28 -10.10 7.11 99.48 0.71 -9.39 16 26 H 0.11 3.97 7.75 -2.91 -0.02 3.95 16 27 H 0.18 2.02 8.03 -2.91 -0.02 1.99 16 28 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.42 2.16 9.06 -74.06 -0.67 1.49 16 30 H 0.16 3.16 7.99 -2.91 -0.02 3.13 16 31 H 0.13 4.45 4.39 -2.91 -0.01 4.44 16 32 H 0.28 14.29 8.72 -92.71 -0.81 13.48 16 Total: -1.00 -63.35 301.76 6.02 -57.33 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.44 Total: 9.01 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 2.98 Total: -24.82 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: 0.65 Total: -65.92 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.23 Total: -8.87 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 1.47 Total: -7.58 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.71 Total: 40.84 kcal Total: -63.35 6.02 -57.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243342701.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.245 kcal (2) G-P(sol) polarization free energy of solvation -63.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds