Wall clock time and date at job start Tue Mar 31 2020 07:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39701 * 120.22439 * 71.14698 * 3 2 1 5 5 Cl 1.73605 * 120.03512 * 359.97438 * 4 3 2 6 6 C 1.38077 * 119.92567 * 179.78678 * 4 3 2 7 7 C 1.38462 * 120.39411 * 0.49030 * 6 4 3 8 8 C 1.38072 * 120.46318 * 359.74295 * 7 6 4 9 9 C 1.39162 * 120.05954 * 0.02562 * 8 7 6 10 10 C 1.48209 * 120.19627 * 179.97438 * 9 8 7 11 11 C 1.39782 * 119.99651 * 129.75259 * 10 9 8 12 12 C 1.38597 * 120.33913 * 179.72170 * 11 10 9 13 13 F 1.35097 * 119.83271 * 180.30152 * 12 11 10 14 14 C 1.37955 * 120.33968 * 0.54861 * 12 11 10 15 15 C 1.40716 * 119.98871 * 359.72542 * 14 12 11 16 16 C 1.41433 * 120.17500 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00039 * 204.51995 * 16 15 14 18 18 C 1.39927 * 119.99628 * 24.51504 * 16 15 14 19 19 N 1.30835 * 120.00053 * 17.92000 * 18 16 15 20 20 Si 1.86799 * 119.99917 * 197.91472 * 18 16 15 21 21 H 1.48500 * 109.46837 * 60.00468 * 20 18 16 22 22 H 1.48499 * 109.47348 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47468 * 300.00479 * 20 18 16 24 24 C 1.38839 * 119.99397 * 310.02212 * 10 9 8 25 25 H 1.08003 * 119.80489 * 180.25370 * 6 4 3 26 26 H 1.08005 * 119.76842 * 179.72046 * 7 6 4 27 27 H 1.07997 * 119.96947 * 180.02562 * 8 7 6 28 28 H 1.07994 * 119.82831 * 359.97438 * 11 10 9 29 29 H 1.08002 * 120.00584 * 179.74861 * 14 12 11 30 30 H 0.97000 * 119.99814 * 179.97438 * 19 18 16 31 31 H 1.08000 * 120.17344 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2715 -0.3891 -1.1423 5 17 2.4105 -0.8772 -2.5686 6 6 4.6522 -0.3820 -1.1370 7 6 5.3464 0.0000 -0.0014 8 6 4.6676 0.3836 1.1380 9 6 3.2760 0.3881 1.1522 10 6 2.5443 0.7988 2.3739 11 6 1.5259 1.7526 2.2911 12 6 0.8331 2.1377 3.4281 13 9 -0.1534 3.0560 3.3353 14 6 1.1492 1.5917 4.6549 15 6 2.1758 0.6345 4.7554 16 6 2.5027 0.0719 6.0111 17 1 3.4897 -0.3323 6.1813 18 6 1.5474 0.0390 7.0330 19 7 0.2796 0.1922 6.7485 20 14 2.0822 -0.2239 8.8034 21 1 3.0041 0.8673 9.2092 22 1 0.8888 -0.2185 9.6871 23 1 2.7789 -1.5300 8.9214 24 6 2.8743 0.2401 3.6013 25 1 5.1940 -0.6797 -2.0225 26 1 6.4264 -0.0025 -0.0070 27 1 5.2170 0.6805 2.0191 28 1 1.2749 2.1888 1.3355 29 1 0.6086 1.8986 5.5381 30 1 -0.3827 0.1690 7.4569 31 1 3.6639 -0.4936 3.6691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244734854.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:56 Heat of formation + Delta-G solvation = -2.896371 kcal Electronic energy + Delta-G solvation = -20369.727466 eV Core-core repulsion = 16941.113918 eV Total energy + Delta-G solvation = -3428.613548 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.68605 -40.89268 -39.03505 -37.57764 -37.50665 -35.75004 -33.27183 -32.21488 -31.59597 -29.75680 -27.45648 -25.17279 -24.29824 -22.75140 -22.16657 -20.14171 -19.21095 -17.89594 -17.18072 -17.02906 -16.70894 -16.58882 -16.34678 -16.29230 -15.70684 -15.34244 -14.89785 -14.58790 -14.23363 -14.12213 -13.89123 -13.82204 -13.47819 -13.17275 -12.98923 -12.73690 -12.72119 -12.49948 -12.33037 -12.18906 -12.09277 -11.89587 -11.57334 -11.09622 -10.16921 -9.86223 -9.50963 -9.14589 -8.73736 -6.50317 -0.42998 -0.01253 0.70345 0.83519 0.98727 1.39881 1.49948 1.53985 1.61325 1.90652 2.17199 2.51937 2.76939 2.81209 3.39622 3.46975 3.79756 4.06306 4.17679 4.28482 4.33631 4.45257 4.54102 4.73892 4.85006 4.97306 5.05634 5.18724 5.27721 5.38357 5.51279 5.62968 5.70866 5.75572 5.88274 6.13022 6.40727 6.48993 6.76429 6.79632 8.21745 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.004192 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.130613 B = 6677.424423 C = 7391.684171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.268 3.732 3 C -0.041 4.041 4 C 0.001 3.999 5 Cl -0.062 7.062 6 C -0.102 4.102 7 C -0.051 4.051 8 C -0.101 4.101 9 C 0.018 3.982 10 C -0.016 4.016 11 C -0.262 4.262 12 C 0.092 3.908 13 F -0.170 7.170 14 C -0.223 4.223 15 C 0.103 3.897 16 C -0.478 4.478 17 H 0.100 0.900 18 C 0.032 3.968 19 N -0.822 5.822 20 Si 0.988 3.012 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.251 1.251 24 C -0.201 4.201 25 H 0.180 0.820 26 H 0.191 0.809 27 H 0.158 0.842 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.291 0.709 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.404 -2.498 -10.511 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.046 4.046 3 C -0.046 4.046 4 C -0.028 4.028 5 Cl -0.033 7.033 6 C -0.121 4.121 7 C -0.069 4.069 8 C -0.119 4.119 9 C 0.015 3.985 10 C -0.017 4.017 11 C -0.282 4.282 12 C 0.073 3.927 13 F -0.149 7.149 14 C -0.243 4.243 15 C 0.100 3.900 16 C -0.506 4.506 17 H 0.118 0.882 18 C -0.185 4.185 19 N -0.447 5.447 20 Si 0.808 3.192 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.175 1.175 24 C -0.220 4.220 25 H 0.197 0.803 26 H 0.208 0.792 27 H 0.175 0.825 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.263 -2.521 -10.560 16.378 hybrid contribution -0.990 0.329 0.788 1.308 sum 11.273 -2.192 -9.772 15.079 Atomic orbital electron populations 1.81146 1.13376 1.09726 1.08646 1.25801 0.93176 0.93038 0.92620 1.16059 0.83562 1.09420 0.95522 1.20999 0.93725 1.01489 0.86569 1.98394 1.77621 1.89754 1.37497 1.21477 0.89434 0.99629 1.01514 1.21790 1.02739 0.92603 0.89763 1.21640 0.90658 0.98619 1.01004 1.18880 0.94483 0.95498 0.89611 1.18240 0.95032 0.95810 0.92604 1.20342 1.03952 1.08237 0.95693 1.17803 0.88316 0.90723 0.95875 1.91319 1.60953 1.65348 1.97307 1.21311 1.05639 1.02504 0.94844 1.17650 0.89714 0.88704 0.93884 1.19964 1.00184 1.34635 0.95791 0.88166 1.26973 0.93826 0.91424 1.06228 1.69898 1.02912 1.34569 1.37333 0.85144 0.78822 0.80504 0.74708 1.17920 1.20013 1.17474 1.21326 1.05765 1.04664 0.90243 0.80292 0.79230 0.82475 0.88072 0.87275 0.89856 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.62 18.54 19.01 0.35 -19.27 16 2 C 0.27 10.28 11.72 88.33 1.04 11.31 16 3 C -0.04 -1.28 5.74 -21.08 -0.12 -1.40 16 4 C 0.00 0.03 6.34 22.59 0.14 0.18 16 5 Cl -0.06 -1.42 28.02 -2.72 -0.08 -1.50 16 6 C -0.10 -1.44 9.81 22.28 0.22 -1.22 16 7 C -0.05 -0.63 10.02 22.28 0.22 -0.40 16 8 C -0.10 -2.09 9.49 22.45 0.21 -1.87 16 9 C 0.02 0.56 5.49 -19.81 -0.11 0.45 16 10 C -0.02 -0.67 5.09 -20.11 -0.10 -0.78 16 11 C -0.26 -12.16 8.43 22.73 0.19 -11.97 16 12 C 0.09 4.76 7.28 22.29 0.16 4.93 16 13 F -0.17 -8.78 17.26 44.97 0.78 -8.01 16 14 C -0.22 -12.04 8.67 22.81 0.20 -11.84 16 15 C 0.10 5.25 5.57 -21.32 -0.12 5.13 16 16 C -0.48 -23.50 9.05 23.47 0.21 -23.29 16 17 H 0.10 4.46 7.91 -2.91 -0.02 4.44 16 18 C 0.03 1.52 5.13 85.25 0.44 1.96 16 19 N -0.82 -42.68 10.96 21.82 0.24 -42.44 16 20 Si 0.99 35.65 29.60 68.60 2.03 37.68 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.28 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 24 C -0.20 -8.72 9.24 22.98 0.21 -8.51 16 25 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 26 H 0.19 0.61 8.06 -2.91 -0.02 0.58 16 27 H 0.16 2.83 8.03 -2.91 -0.02 2.81 16 28 H 0.10 4.56 7.29 -2.91 -0.02 4.54 16 29 H 0.11 6.26 6.15 -2.91 -0.02 6.24 16 30 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 31 H 0.13 4.93 8.03 -2.91 -0.02 4.91 16 Total: -1.00 -65.47 304.58 7.31 -58.15 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.20 Total: 12.70 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 2.80 Total: -37.33 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.59 Total: -61.71 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.78 Total: -8.01 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -65.47 7.31 -58.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244734854.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.257 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds