Wall clock time and date at job start Tue Mar 31 2020 08:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48511 * 109.46894 * 270.00194 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99907 * 3 2 1 6 6 H 1.48494 * 109.47081 * 150.00571 * 3 2 1 7 7 C 1.37875 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00482 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47520 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99744 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47813 * 324.99513 * 12 11 10 14 14 C 1.50706 * 109.47458 * 85.00258 * 12 11 10 15 15 O 1.20832 * 119.99332 * 359.97438 * 14 12 11 16 16 O 1.34225 * 120.00368 * 179.97438 * 14 12 11 17 17 C 1.50704 * 109.46560 * 204.99585 * 12 11 10 18 18 C 1.38458 * 120.02283 * 315.25416 * 17 12 11 19 19 F 1.35097 * 120.02039 * 0.02562 * 18 17 12 20 20 C 1.38449 * 119.96084 * 180.31989 * 18 17 12 21 21 C 1.38229 * 119.99978 * 359.70545 * 20 18 17 22 22 C 1.38203 * 120.03791 * 359.97438 * 21 20 18 23 23 C 1.38296 * 120.01318 * 135.00195 * 17 12 11 24 24 Cl 1.73599 * 120.00499 * 359.97438 * 23 17 12 25 25 H 0.97000 * 119.99963 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47023 * 60.00247 * 9 7 2 27 27 H 1.08994 * 109.47231 * 300.00653 * 9 7 2 28 28 H 1.09003 * 109.46698 * 60.00136 * 10 9 7 29 29 H 1.08994 * 109.47474 * 300.00592 * 10 9 7 30 30 H 1.00904 * 110.99739 * 303.95195 * 11 10 9 31 31 H 0.96691 * 117.00090 * 179.97438 * 16 14 12 32 32 H 1.08000 * 119.99983 * 179.72166 * 20 18 17 33 33 H 1.08003 * 119.97785 * 179.97438 * 21 20 18 34 34 H 1.08005 * 119.97685 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 7 1.5108 -4.9343 -0.0024 12 6 2.4353 -6.0758 -0.0031 13 1 3.3181 -5.8282 -0.5925 14 6 2.8478 -6.3891 1.4122 15 8 2.4161 -5.7287 2.3274 16 8 3.6946 -7.4016 1.6560 17 6 1.7506 -7.2763 -0.6041 18 6 0.4537 -7.5909 -0.2352 19 9 -0.1990 -6.8216 0.6634 20 6 -0.1718 -8.6979 -0.7831 21 6 0.4964 -9.4847 -1.7025 22 6 1.7885 -9.1669 -2.0756 23 6 2.4156 -8.0613 -1.5283 24 17 4.0391 -7.6636 -1.9970 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8921 30 1 0.8747 -4.9849 0.7792 31 1 3.9302 -7.5640 2.5796 32 1 -1.1818 -8.9465 -0.4925 33 1 0.0083 -10.3484 -2.1294 34 1 2.3098 -9.7826 -2.7937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:07 Heat of formation + Delta-G solvation = -117.261997 kcal Electronic energy + Delta-G solvation = -22196.815601 eV Core-core repulsion = 18455.933867 eV Total energy + Delta-G solvation = -3740.881734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.067 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -49.00968 -40.58240 -39.24323 -36.67780 -36.61687 -35.58331 -33.33414 -31.82437 -30.66353 -29.18378 -26.58910 -23.94681 -23.05106 -23.00049 -20.85811 -20.64110 -18.30076 -17.81957 -17.22675 -16.78809 -16.42283 -16.10694 -15.67663 -15.40730 -14.94770 -14.61503 -14.31883 -13.96720 -13.71953 -13.54020 -13.30154 -12.94087 -12.44241 -12.31390 -12.00887 -11.61227 -11.56508 -11.53052 -11.14191 -10.99361 -10.85531 -10.78817 -10.54492 -10.08982 -9.48363 -9.17629 -9.03259 -8.90178 -8.36717 -8.19033 -5.96775 -3.99398 0.71713 0.80917 1.80821 2.15546 2.93997 3.23434 3.34677 3.40496 3.44111 4.03421 4.21126 4.38159 4.50953 4.56513 4.76611 4.91537 5.11534 5.22083 5.28540 5.39349 5.60137 5.75529 5.80492 5.91769 6.20554 6.31526 6.44146 6.46582 6.91689 7.18066 7.62438 7.74112 7.85986 7.89370 8.06803 8.43798 9.06892 9.63974 11.14761 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.004018 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.015812 B = 6966.419468 C = 7174.130156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.656 5.656 12 C 0.131 3.869 13 H 0.132 0.868 14 C 0.451 3.549 15 O -0.497 6.497 16 O -0.513 6.513 17 C -0.097 4.097 18 C 0.138 3.862 19 F -0.119 7.119 20 C -0.153 4.153 21 C -0.077 4.077 22 C -0.124 4.124 23 C 0.009 3.991 24 Cl -0.049 7.049 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.017 0.983 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.357 0.643 31 H 0.404 0.596 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -23.477 -2.930 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.068 4.068 11 N -0.290 5.290 12 C 0.018 3.982 13 H 0.149 0.851 14 C 0.289 3.711 15 O -0.384 6.384 16 O -0.323 6.323 17 C -0.100 4.100 18 C 0.118 3.882 19 F -0.097 7.097 20 C -0.171 4.171 21 C -0.095 4.095 22 C -0.143 4.143 23 C -0.019 4.019 24 Cl -0.019 7.019 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.181 0.819 31 H 0.262 0.738 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.819 -23.000 -3.743 23.613 hybrid contribution 0.931 1.112 1.682 2.221 sum 4.750 -21.887 -2.061 22.491 Atomic orbital electron populations 1.69974 1.06029 1.26592 1.50545 1.24987 0.94838 0.99188 0.95265 0.86575 0.79802 0.83421 0.78078 1.20621 1.21214 1.19927 1.21124 0.92964 0.90843 1.51024 0.92713 1.19042 0.93903 0.90038 0.97994 1.22368 0.97557 0.87655 0.99194 1.61156 1.16873 1.00886 1.50066 1.20373 0.97874 0.91114 0.88879 0.85062 1.24874 0.75454 0.76920 0.93826 1.90770 1.52681 1.48770 1.46154 1.84605 1.60770 1.50677 1.36270 1.19287 0.93807 0.97196 0.99664 1.17315 0.89790 0.90539 0.90547 1.91540 1.80235 1.73657 1.64300 1.21261 1.01702 0.94888 0.99296 1.20962 0.93599 0.99113 0.95814 1.21055 0.95533 0.96382 1.01315 1.20474 0.87540 0.96400 0.97443 1.98389 1.19463 1.93323 1.90775 0.92979 0.95474 0.96443 0.95568 0.91831 0.81945 0.73785 0.83867 0.83938 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.75 5.23 -27.89 -0.15 0.60 16 10 C 0.06 1.32 5.32 -3.83 -0.02 1.30 16 11 N -0.66 -12.66 5.52 -109.19 -0.60 -13.26 16 12 C 0.13 2.08 2.39 -70.01 -0.17 1.91 16 13 H 0.13 2.01 6.03 -51.93 -0.31 1.70 16 14 C 0.45 7.08 7.38 36.01 0.27 7.35 16 15 O -0.50 -9.46 16.06 -18.75 -0.30 -9.76 16 16 O -0.51 -6.08 13.34 -39.24 -0.52 -6.60 16 17 C -0.10 -1.33 4.88 -104.52 -0.51 -1.84 16 18 C 0.14 1.85 7.01 -39.42 -0.28 1.57 16 19 F -0.12 -1.87 14.76 2.25 0.03 -1.83 16 20 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 21 C -0.08 -0.60 10.04 -39.60 -0.40 -0.99 16 22 C -0.12 -1.08 9.83 -39.54 -0.39 -1.47 16 23 C 0.01 0.10 6.31 -39.51 -0.25 -0.15 16 24 Cl -0.05 -0.54 27.08 -51.86 -1.40 -1.95 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.59 7.62 -51.93 -0.40 0.20 16 29 H 0.06 1.34 8.05 -51.93 -0.42 0.93 16 30 H 0.36 7.28 5.97 -39.29 -0.23 7.04 16 31 H 0.40 3.05 9.10 45.56 0.41 3.47 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -33.90 317.20 -7.60 -41.50 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.60 Total: 4.19 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.70 Total: -7.46 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.13 Total: -39.94 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.82 Total: -16.36 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.03 Total: -1.83 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.40 Total: -1.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.90 -7.60 -41.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.760 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds