Wall clock time and date at job start Tue Mar 31 2020 08:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48511 * 109.46894 * 270.00194 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99907 * 3 2 1 6 6 H 1.48494 * 109.47081 * 150.00571 * 3 2 1 7 7 C 1.37875 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00482 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47520 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99744 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47813 * 324.99513 * 12 11 10 14 14 C 1.50706 * 109.47458 * 85.00258 * 12 11 10 15 15 O 1.20832 * 119.99332 * 359.97438 * 14 12 11 16 16 O 1.34225 * 120.00368 * 179.97438 * 14 12 11 17 17 C 1.50704 * 109.46560 * 204.99585 * 12 11 10 18 18 C 1.38458 * 120.02283 * 315.25416 * 17 12 11 19 19 F 1.35097 * 120.02039 * 0.02562 * 18 17 12 20 20 C 1.38449 * 119.96084 * 180.31989 * 18 17 12 21 21 C 1.38229 * 119.99978 * 359.70545 * 20 18 17 22 22 C 1.38203 * 120.03791 * 359.97438 * 21 20 18 23 23 C 1.38296 * 120.01318 * 135.00195 * 17 12 11 24 24 Cl 1.73599 * 120.00499 * 359.97438 * 23 17 12 25 25 H 0.97000 * 119.99963 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47023 * 60.00247 * 9 7 2 27 27 H 1.08994 * 109.47231 * 300.00653 * 9 7 2 28 28 H 1.09003 * 109.46698 * 60.00136 * 10 9 7 29 29 H 1.08994 * 109.47474 * 300.00592 * 10 9 7 30 30 H 1.00904 * 110.99739 * 303.95195 * 11 10 9 31 31 H 0.96691 * 117.00090 * 179.97438 * 16 14 12 32 32 H 1.08000 * 119.99983 * 179.72166 * 20 18 17 33 33 H 1.08003 * 119.97785 * 179.97438 * 21 20 18 34 34 H 1.08005 * 119.97685 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 7 1.5108 -4.9343 -0.0024 12 6 2.4353 -6.0758 -0.0031 13 1 3.3181 -5.8282 -0.5925 14 6 2.8478 -6.3891 1.4122 15 8 2.4161 -5.7287 2.3274 16 8 3.6946 -7.4016 1.6560 17 6 1.7506 -7.2763 -0.6041 18 6 0.4537 -7.5909 -0.2352 19 9 -0.1990 -6.8216 0.6634 20 6 -0.1718 -8.6979 -0.7831 21 6 0.4964 -9.4847 -1.7025 22 6 1.7885 -9.1669 -2.0756 23 6 2.4156 -8.0613 -1.5283 24 17 4.0391 -7.6636 -1.9970 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8921 30 1 0.8747 -4.9849 0.7792 31 1 3.9302 -7.5640 2.5796 32 1 -1.1818 -8.9465 -0.4925 33 1 0.0083 -10.3484 -2.1294 34 1 2.3098 -9.7826 -2.7937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:06 Heat of formation + Delta-G solvation = -140.683196 kcal Electronic energy + Delta-G solvation = -22197.831220 eV Core-core repulsion = 18455.933867 eV Total energy + Delta-G solvation = -3741.897353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.05597 -41.79543 -40.12736 -37.93135 -37.51277 -36.96765 -35.28070 -33.33849 -31.47715 -30.80145 -28.05925 -25.84086 -24.02614 -23.92248 -22.57104 -21.98662 -19.45704 -18.77179 -18.58281 -18.45264 -17.72498 -17.32049 -16.77923 -16.53309 -16.42933 -15.84907 -15.67621 -15.46743 -15.02172 -14.71681 -14.48807 -14.17507 -14.04788 -13.66566 -13.18495 -13.01894 -12.88396 -12.74362 -12.50511 -12.44225 -12.38051 -12.26323 -11.97646 -11.82395 -11.51752 -11.34743 -10.59563 -9.96803 -9.80128 -9.73117 -8.22085 -6.34419 -0.10614 -0.00805 0.88690 1.00077 1.39002 1.41551 1.52444 1.86300 2.35657 2.41935 2.98922 3.11288 3.19751 3.29832 3.65263 3.86436 4.07612 4.19483 4.23715 4.37455 4.40686 4.46475 4.78642 4.93873 4.98975 5.09199 5.20683 5.30639 5.39244 5.56585 5.63585 5.69762 5.88121 6.01904 6.22597 6.77391 6.80855 7.34700 8.90514 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.004018 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.015812 B = 6966.419468 C = 7174.130156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.036 3.964 10 C 0.079 3.921 11 N -0.660 5.660 12 C 0.130 3.870 13 H 0.136 0.864 14 C 0.459 3.541 15 O -0.539 6.539 16 O -0.496 6.496 17 C -0.120 4.120 18 C 0.103 3.897 19 F -0.143 7.143 20 C -0.148 4.148 21 C -0.058 4.058 22 C -0.113 4.113 23 C -0.001 4.001 24 Cl -0.051 7.051 25 H 0.265 0.735 26 H 0.001 0.999 27 H -0.015 1.015 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.348 0.652 31 H 0.425 0.575 32 H 0.164 0.836 33 H 0.189 0.811 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -25.372 -4.229 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.049 4.049 11 N -0.293 5.293 12 C 0.017 3.983 13 H 0.154 0.846 14 C 0.299 3.701 15 O -0.429 6.429 16 O -0.308 6.308 17 C -0.122 4.122 18 C 0.083 3.917 19 F -0.122 7.122 20 C -0.167 4.167 21 C -0.075 4.075 22 C -0.131 4.131 23 C -0.029 4.029 24 Cl -0.022 7.022 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.003 0.997 28 H 0.035 0.965 29 H 0.093 0.907 30 H 0.171 0.829 31 H 0.287 0.713 32 H 0.182 0.818 33 H 0.206 0.794 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.943 -24.944 -5.047 25.925 hybrid contribution 0.582 1.512 2.054 2.616 sum 5.525 -23.432 -2.992 24.260 Atomic orbital electron populations 1.70117 1.07908 1.27906 1.51163 1.25999 0.95792 1.03465 0.94412 0.85370 0.78492 0.78007 0.78686 1.19328 1.20645 1.18845 1.21544 0.93541 0.91962 1.51347 0.91996 1.18858 0.94135 0.92078 0.95101 1.21973 0.96113 0.87668 0.99167 1.61042 1.17475 1.00905 1.49861 1.20347 0.97632 0.90931 0.89349 0.84645 1.24718 0.75149 0.76866 0.93319 1.90759 1.54377 1.50465 1.47260 1.84532 1.59254 1.48837 1.38213 1.19172 0.94421 0.97172 1.01441 1.17779 0.90249 0.92053 0.91626 1.91476 1.80691 1.74626 1.65414 1.21619 1.02628 0.93559 0.98892 1.21507 0.92900 0.99271 0.93853 1.21517 0.95835 0.95138 1.00659 1.20656 0.87623 0.97177 0.97413 1.98386 1.19621 1.93466 1.90695 0.92649 0.98065 0.99653 0.96457 0.90736 0.82946 0.71300 0.81819 0.79428 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.70 13.29 21.45 0.28 -58.42 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -32.54 9.11 25.60 0.23 -32.30 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.04 5.23 29.85 0.16 2.20 16 10 C 0.08 3.65 5.32 86.30 0.46 4.10 16 11 N -0.66 -26.74 5.52 -499.36 -2.76 -29.50 16 12 C 0.13 4.21 2.39 43.43 0.10 4.31 16 13 H 0.14 4.18 6.03 -2.39 -0.01 4.16 16 14 C 0.46 14.65 7.38 71.24 0.53 15.18 16 15 O -0.54 -21.30 16.06 21.95 0.35 -20.95 16 16 O -0.50 -11.31 13.34 -51.37 -0.69 -11.99 16 17 C -0.12 -3.24 4.88 -19.80 -0.10 -3.34 16 18 C 0.10 2.73 7.01 22.37 0.16 2.89 16 19 F -0.14 -4.73 14.76 44.97 0.66 -4.07 16 20 C -0.15 -2.57 10.03 22.32 0.22 -2.35 16 21 C -0.06 -0.65 10.04 22.26 0.22 -0.42 16 22 C -0.11 -1.55 9.83 22.30 0.22 -1.33 16 23 C 0.00 -0.03 6.31 22.32 0.14 0.11 16 24 Cl -0.05 -1.05 27.08 -2.72 -0.07 -1.13 16 25 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 27 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.02 0.81 7.62 -2.39 -0.02 0.79 16 29 H 0.07 3.23 8.05 -2.39 -0.02 3.21 16 30 H 0.35 15.23 5.97 -89.69 -0.54 14.69 16 31 H 0.43 5.87 9.10 -74.06 -0.67 5.20 16 32 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -76.88 317.20 2.58 -74.30 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.04 Total: 14.55 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 2.81 Total: -10.39 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -2.47 Total: -87.91 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.33 Total: -32.94 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.66 Total: -4.07 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.13 kcal Total: -76.88 2.58 -74.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.382 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds