Wall clock time and date at job start Tue Mar 31 2020 08:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46490 * 120.00178 * 2 1 4 4 C 1.50693 * 109.47546 * 269.99912 * 3 2 1 5 5 H 1.08000 * 119.99917 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00224 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99840 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99621 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47399 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47210 * 120.00040 * 8 6 4 11 11 H 1.48501 * 109.46564 * 239.99246 * 8 6 4 12 12 C 1.34774 * 119.99709 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00328 * 183.70163 * 12 2 1 14 14 C 1.50700 * 120.00064 * 3.69947 * 12 2 1 15 15 H 1.09000 * 109.47644 * 37.07951 * 14 12 2 16 16 O 1.42906 * 109.47121 * 157.07840 * 14 12 2 17 17 C 1.50701 * 109.47317 * 277.07489 * 14 12 2 18 18 C 1.38227 * 120.00382 * 283.47842 * 17 14 12 19 19 C 1.38193 * 120.03956 * 180.02562 * 18 17 14 20 20 C 1.38386 * 120.04432 * 359.97438 * 19 18 17 21 21 Cl 1.73592 * 120.00570 * 179.97438 * 20 19 18 22 22 C 1.38301 * 119.99325 * 359.97438 * 20 19 18 23 23 C 1.38446 * 119.99750 * 103.20070 * 17 14 12 24 24 F 1.35105 * 120.01931 * 0.02562 * 23 17 14 25 25 H 1.08994 * 109.47227 * 273.65332 * 1 2 3 26 26 H 1.09005 * 109.46621 * 33.65749 * 1 2 3 27 27 H 1.09000 * 109.47390 * 153.65271 * 1 2 3 28 28 H 1.09004 * 109.47108 * 30.00330 * 3 2 1 29 29 H 1.09004 * 109.47107 * 149.99704 * 3 2 1 30 30 H 0.97007 * 119.99316 * 180.02562 * 7 6 4 31 31 H 0.96701 * 114.00089 * 59.99916 * 16 14 12 32 32 H 1.07997 * 119.97700 * 0.02562 * 18 17 14 33 33 H 1.08008 * 119.97970 * 179.97438 * 19 18 17 34 34 H 1.07995 * 120.01275 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0962 -2.2416 6 6 3.1270 2.8774 -1.6726 7 7 3.5543 3.6174 -0.6730 8 14 3.4378 3.4170 -3.4338 9 1 2.8598 2.4170 -4.3672 10 1 2.8008 4.7381 -3.6665 11 1 4.9003 3.5246 -3.6677 12 6 2.1388 -1.1672 -0.0005 13 8 3.3498 -1.1685 0.0673 14 6 1.3876 -2.4709 -0.0853 15 1 0.5318 -2.3546 -0.7503 16 8 2.2530 -3.4870 -0.5960 17 6 0.9070 -2.8640 1.2878 18 6 1.7940 -3.3970 2.2043 19 6 1.3540 -3.7582 3.4635 20 6 0.0249 -3.5864 3.8088 21 17 -0.5269 -4.0411 5.3906 22 6 -0.8637 -3.0522 2.8934 23 6 -0.4218 -2.6860 1.6334 24 9 -1.2880 -2.1603 0.7397 25 1 -0.3633 0.0655 1.0255 26 1 -0.3633 0.8555 -0.5696 27 1 -0.3634 -0.9209 -0.4561 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5139 30 1 4.0312 4.4434 -0.8503 31 1 3.0377 -3.6446 -0.0533 32 1 2.8315 -3.5312 1.9360 33 1 2.0478 -4.1750 4.1787 34 1 -1.9008 -2.9176 3.1627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291564607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:32 Heat of formation + Delta-G solvation = -123.973890 kcal Electronic energy + Delta-G solvation = -22436.311634 eV Core-core repulsion = 18695.138851 eV Total energy + Delta-G solvation = -3741.172783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.067 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.24023 -41.48649 -39.97579 -37.95653 -37.31067 -36.59880 -34.80719 -32.71212 -31.88271 -30.17534 -28.13702 -27.30896 -24.91955 -24.12245 -23.08567 -20.69110 -19.46748 -18.75611 -18.61592 -18.22449 -17.74899 -17.23199 -16.88938 -16.42833 -16.33439 -16.03266 -15.36405 -15.12303 -14.79427 -14.73424 -14.42398 -14.20720 -13.92602 -13.86740 -13.46572 -13.12948 -13.01922 -12.82674 -12.70940 -12.55379 -12.44270 -12.23446 -12.07647 -11.95831 -11.71759 -10.70132 -10.67453 -10.11251 -9.75620 -9.54456 -8.25965 -6.40983 -0.30389 -0.05208 0.90034 1.36018 1.38089 1.49298 1.55309 2.06934 2.28461 2.39087 3.00700 3.04077 3.19458 3.28115 3.45076 3.57590 3.73927 3.92458 4.19490 4.31939 4.36099 4.55179 4.64464 4.78920 4.86464 4.92238 4.96137 5.04133 5.16498 5.47178 5.50172 5.74177 6.00662 6.34605 6.57861 6.68425 7.14631 7.32328 8.81690 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.024864 B = 0.003773 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.858670 B = 7419.138496 C = 7548.431326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.598 5.598 3 C 0.258 3.742 4 C -0.547 4.547 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.268 1.268 11 H -0.280 1.280 12 C 0.477 3.523 13 O -0.580 6.580 14 C 0.147 3.853 15 H 0.140 0.860 16 O -0.536 6.536 17 C -0.156 4.156 18 C -0.068 4.068 19 C -0.109 4.109 20 C -0.007 4.007 21 Cl -0.045 7.045 22 C -0.141 4.141 23 C 0.121 3.879 24 F -0.124 7.124 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.004 0.996 30 H 0.268 0.732 31 H 0.392 0.608 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.114 -16.691 9.692 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.330 5.330 3 C 0.137 3.863 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.193 1.193 11 H -0.206 1.206 12 C 0.264 3.736 13 O -0.461 6.461 14 C 0.084 3.916 15 H 0.157 0.843 16 O -0.343 6.343 17 C -0.158 4.158 18 C -0.087 4.087 19 C -0.128 4.128 20 C -0.034 4.034 21 Cl -0.016 7.016 22 C -0.160 4.160 23 C 0.102 3.898 24 F -0.102 7.102 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.043 0.957 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.243 0.757 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.950 -16.563 9.420 21.977 hybrid contribution 0.627 0.905 -0.405 1.173 sum -10.323 -15.658 9.016 20.809 Atomic orbital electron populations 1.22331 0.78115 1.04543 1.02382 1.48170 1.08247 1.06524 1.70027 1.18829 0.91232 0.79953 0.96292 1.21717 1.37150 1.06848 0.92880 0.92851 1.25849 0.94728 0.96276 1.02069 1.70053 1.38721 1.14792 1.32995 0.85349 0.77976 0.78410 0.78974 1.19202 1.19328 1.20566 1.21716 0.88256 0.86841 0.76745 1.90636 1.15689 1.87621 1.52136 1.20540 0.93217 0.84392 0.93476 0.84293 1.86593 1.38516 1.54628 1.54542 1.20311 0.93720 1.04470 0.97250 1.21003 1.00226 0.95329 0.92105 1.21332 0.94416 1.00199 0.96848 1.20771 0.94113 1.00561 0.88002 1.98401 1.89715 1.90647 1.22838 1.21130 1.02457 1.01408 0.90983 1.17205 0.86215 0.98379 0.88034 1.91478 1.68774 1.83539 1.66450 0.91662 0.90947 0.88687 0.95700 0.97821 0.92280 0.75653 0.82945 0.81526 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.21 8.77 127.77 1.12 3.33 16 2 N -0.60 -25.90 2.86 -851.16 -2.43 -28.33 16 3 C 0.26 14.02 5.21 85.63 0.45 14.47 16 4 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.58 5.46 84.66 0.46 1.05 16 7 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 8 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.48 19.86 6.85 87.66 0.60 20.47 16 13 O -0.58 -28.93 15.91 14.91 0.24 -28.69 16 14 C 0.15 4.45 2.91 29.10 0.08 4.54 16 15 H 0.14 3.91 5.71 -2.39 -0.01 3.89 16 16 O -0.54 -15.93 13.03 -131.03 -1.71 -17.64 16 17 C -0.16 -3.83 4.83 -19.82 -0.10 -3.92 16 18 C -0.07 -1.43 9.27 22.26 0.21 -1.23 16 19 C -0.11 -1.87 9.83 22.29 0.22 -1.65 16 20 C -0.01 -0.13 6.32 22.32 0.14 0.01 16 21 Cl -0.05 -0.68 28.96 -2.72 -0.08 -0.76 16 22 C -0.14 -2.50 9.81 22.34 0.22 -2.28 16 23 C 0.12 2.64 6.65 22.37 0.15 2.79 16 24 F -0.12 -2.68 12.92 44.97 0.58 -2.10 16 25 H 0.06 1.86 7.67 -2.39 -0.02 1.85 16 26 H 0.07 2.40 8.10 -2.38 -0.02 2.38 16 27 H 0.09 2.57 3.74 -2.39 -0.01 2.56 16 28 H 0.02 1.37 8.07 -2.38 -0.02 1.35 16 29 H 0.00 0.23 7.37 -2.38 -0.02 0.21 16 30 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 31 H 0.39 9.78 7.20 -74.06 -0.53 9.25 16 32 H 0.15 2.90 6.93 -2.91 -0.02 2.88 16 33 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -72.02 310.13 3.33 -68.68 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.63 Total: 11.38 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 3.79 Total: 6.01 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.15 Total: -83.88 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -1.47 Total: -46.33 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.58 Total: -2.10 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -72.02 3.33 -68.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291564607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.289 kcal (2) G-P(sol) polarization free energy of solvation -72.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds