Wall clock time and date at job start Tue Mar 31 2020 07:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48494 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46894 * 300.00111 * 3 2 1 6 6 H 1.48499 * 109.46785 * 60.00080 * 3 2 1 7 7 C 1.40227 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00092 * 197.88598 * 7 2 1 9 9 C 1.41086 * 120.00222 * 17.88037 * 7 2 1 10 10 C 1.40898 * 120.10064 * 204.63911 * 9 7 2 11 11 C 1.36305 * 119.89396 * 180.02562 * 10 9 7 12 12 C 1.40042 * 120.10554 * 0.02562 * 11 10 9 13 13 C 1.47578 * 119.89974 * 179.97438 * 12 11 10 14 14 O 1.21601 * 120.00131 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00129 * 180.02562 * 13 12 11 16 16 C 1.39633 * 120.00061 * 179.97438 * 15 13 12 17 17 N 1.30942 * 126.08534 * 0.02983 * 16 15 13 18 18 N 1.39912 * 108.87804 * 179.75889 * 17 16 15 19 19 H 0.96995 * 125.66227 * 180.25480 * 18 17 16 20 20 C 1.34143 * 108.67574 * 0.36853 * 18 17 16 21 21 C 1.38180 * 107.53908 * 359.63935 * 20 18 17 22 22 C 1.47080 * 126.46382 * 180.22871 * 21 20 18 23 23 O 1.21545 * 120.00383 * 179.97438 * 22 21 20 24 24 O 1.34784 * 119.99612 * 359.97438 * 22 21 20 25 25 C 1.40045 * 120.20321 * 0.23692 * 12 11 10 26 26 C 1.36302 * 120.10268 * 359.48089 * 25 12 11 27 27 H 0.96996 * 119.99828 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.05793 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.94951 * 180.02562 * 11 10 9 30 30 H 0.96997 * 120.00100 * 0.02562 * 15 13 12 31 31 H 1.07998 * 126.22927 * 179.90498 * 20 18 17 32 32 H 0.96701 * 116.99477 * 179.97438 * 24 22 21 33 33 H 1.07998 * 119.94943 * 179.72055 * 25 12 11 34 34 H 1.08005 * 120.05447 * 180.25814 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2372 0.2867 9 6 1.3533 -2.4066 -0.3762 10 6 1.8269 -3.6494 0.0891 11 6 1.1919 -4.7986 -0.2769 12 6 0.0708 -4.7455 -1.1145 13 6 -0.6129 -5.9926 -1.5083 14 8 -0.2030 -7.0642 -1.1053 15 7 -1.6918 -5.9439 -2.3147 16 6 -2.3384 -7.1240 -2.6878 17 7 -2.0007 -8.3361 -2.3256 18 7 -2.8946 -9.2460 -2.9006 19 1 -2.8711 -10.2092 -2.7890 20 6 -3.7883 -8.5653 -3.6337 21 6 -3.4786 -7.2229 -3.5265 22 6 -4.1958 -6.1070 -4.1619 23 8 -3.8199 -4.9645 -3.9866 24 8 -5.2698 -6.3514 -4.9387 25 6 -0.4002 -3.5130 -1.5839 26 6 0.2249 -2.3582 -1.2185 27 1 -0.4850 0.8400 -0.0004 28 1 2.6916 -3.6914 0.7347 29 1 1.5539 -5.7516 0.0796 30 1 -2.0186 -5.0893 -2.6365 31 1 -4.6040 -8.9889 -4.2006 32 1 -5.7086 -5.5859 -5.3345 33 1 -1.2624 -3.4772 -2.2332 34 1 -0.1416 -1.4078 -1.5776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:20 Heat of formation + Delta-G solvation = -31.811240 kcal Electronic energy + Delta-G solvation = -22920.081987 eV Core-core repulsion = 19205.258487 eV Total energy + Delta-G solvation = -3714.823499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.56800 -39.64072 -39.05566 -37.14229 -36.07016 -34.38726 -33.89022 -31.06837 -30.64968 -29.75682 -29.43822 -26.06076 -24.13618 -23.20967 -21.48243 -21.07764 -20.35626 -19.31939 -18.37212 -17.83143 -17.52840 -16.74622 -16.10884 -15.97434 -15.85062 -15.39265 -14.85854 -14.10568 -13.98718 -13.80408 -13.72121 -13.26931 -12.99045 -12.78680 -12.10233 -11.96062 -11.61933 -11.43098 -11.29192 -11.05448 -10.99341 -10.87302 -10.63109 -10.53790 -10.04285 -9.56744 -9.35284 -9.10934 -9.04547 -8.38670 -7.72286 -7.55805 -7.04627 -4.61370 1.20197 1.93710 2.37540 2.45114 2.89898 2.95750 3.01332 3.01902 3.05041 3.15223 3.62537 3.74049 3.91475 4.42532 4.56345 4.78148 5.15070 5.50282 5.56567 5.64848 5.99719 6.09597 6.31174 6.43906 6.77279 6.81961 6.88777 6.91649 7.06452 7.13081 7.27746 7.44376 7.67422 7.79548 7.85966 7.91128 8.05956 8.17725 8.39455 8.61902 8.74373 8.93059 9.87048 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.003421 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.912131 B = 8183.057574 C = 9350.011214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.438 4.438 8 H 0.087 0.913 9 C 0.130 3.870 10 C -0.239 4.239 11 C -0.017 4.017 12 C -0.286 4.286 13 C 0.563 3.437 14 O -0.526 6.526 15 N -0.639 5.639 16 C 0.372 3.628 17 N -0.282 5.282 18 N -0.454 5.454 19 H 0.447 0.553 20 C 0.149 3.851 21 C -0.312 4.312 22 C 0.562 3.438 23 O -0.523 6.523 24 O -0.519 6.519 25 C -0.061 4.061 26 C -0.177 4.177 27 H 0.287 0.713 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.428 0.572 31 H 0.195 0.805 32 H 0.413 0.587 33 H 0.092 0.908 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.216 -9.535 -8.717 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.149 4.149 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.105 0.895 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.036 4.036 12 C -0.291 4.291 13 C 0.359 3.641 14 O -0.402 6.402 15 N -0.292 5.292 16 C 0.112 3.888 17 N -0.113 5.113 18 N -0.158 5.158 19 H 0.292 0.708 20 C -0.008 4.008 21 C -0.327 4.327 22 C 0.407 3.593 23 O -0.413 6.413 24 O -0.331 6.331 25 C -0.080 4.080 26 C -0.196 4.196 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.270 0.730 31 H 0.212 0.788 32 H 0.271 0.729 33 H 0.110 0.890 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.930 -10.745 -7.457 15.837 hybrid contribution -0.929 1.686 -0.868 2.111 sum -9.859 -9.060 -8.325 15.767 Atomic orbital electron populations 1.69753 1.07951 1.30125 1.31140 1.26134 0.94825 1.01992 0.91905 0.86152 0.81096 0.80110 0.78896 1.18024 1.19321 1.19645 1.19915 0.98473 0.91179 1.36987 0.89542 1.17815 0.90296 0.92218 0.87026 1.20701 1.04664 0.92541 1.07922 1.20342 0.92596 0.97297 0.93373 1.18707 1.04855 0.90268 1.15255 1.18937 0.78185 0.90481 0.76514 1.90732 1.64343 1.31084 1.54024 1.43497 1.29940 1.06139 1.49667 1.19277 0.89657 0.88117 0.91756 1.78181 1.13349 0.96720 1.23069 1.46193 1.22288 1.10198 1.37119 0.70769 1.23176 0.93739 0.91177 0.92728 1.18980 1.05151 0.92113 1.16480 1.19578 0.77288 0.87296 0.75131 1.90883 1.66481 1.23273 1.60622 1.84519 1.42799 1.44194 1.61544 1.20549 0.97400 0.92535 0.97531 1.20979 0.99832 0.96935 1.01828 0.90143 0.88219 0.87934 0.73024 0.78807 0.72864 0.88952 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.50 10.95 55.56 0.61 -17.90 16 2 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 3 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.44 -10.92 9.04 -37.76 -0.34 -11.27 16 8 H 0.09 2.05 7.91 -52.48 -0.42 1.64 16 9 C 0.13 3.34 5.57 -106.80 -0.60 2.74 16 10 C -0.24 -5.82 9.73 -39.27 -0.38 -6.21 16 11 C -0.02 -0.40 9.52 -39.60 -0.38 -0.78 16 12 C -0.29 -6.81 5.89 -104.73 -0.62 -7.43 16 13 C 0.56 12.88 7.73 -12.45 -0.10 12.79 16 14 O -0.53 -13.07 15.04 5.28 0.08 -12.99 16 15 N -0.64 -12.70 5.36 -11.86 -0.06 -12.77 16 16 C 0.37 6.61 7.78 -154.56 -1.20 5.41 16 17 N -0.28 -4.89 10.85 31.60 0.34 -4.54 16 18 N -0.45 -4.77 7.27 30.85 0.22 -4.54 16 19 H 0.45 2.77 8.96 -182.74 -1.64 1.13 16 20 C 0.15 1.35 11.85 -16.56 -0.20 1.15 16 21 C -0.31 -4.23 6.14 -104.93 -0.64 -4.87 16 22 C 0.56 7.28 8.32 34.32 0.29 7.57 16 23 O -0.52 -8.48 15.99 -19.30 -0.31 -8.79 16 24 O -0.52 -4.39 13.26 -40.72 -0.54 -4.93 16 25 C -0.06 -1.42 9.47 -39.60 -0.38 -1.80 16 26 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 27 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 28 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.10 2.36 7.63 -52.48 -0.40 1.96 16 30 H 0.43 8.15 4.95 -40.82 -0.20 7.95 16 31 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.41 1.79 9.11 45.56 0.42 2.20 16 33 H 0.09 1.93 6.37 -52.49 -0.33 1.60 16 34 H 0.12 3.08 6.16 -52.48 -0.32 2.76 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -33.90 309.96 -7.86 -41.77 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -2.88 Total: 13.60 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -4.97 Total: -5.84 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 1.11 Total: -39.75 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.77 Total: -26.71 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.90 -7.86 -41.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.957 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds