Wall clock time and date at job start Tue Mar 31 2020 07:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48494 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46894 * 300.00111 * 3 2 1 6 6 H 1.48499 * 109.46785 * 60.00080 * 3 2 1 7 7 C 1.40227 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00092 * 197.88598 * 7 2 1 9 9 C 1.41086 * 120.00222 * 17.88037 * 7 2 1 10 10 C 1.40898 * 120.10064 * 204.63911 * 9 7 2 11 11 C 1.36305 * 119.89396 * 180.02562 * 10 9 7 12 12 C 1.40042 * 120.10554 * 0.02562 * 11 10 9 13 13 C 1.47578 * 119.89974 * 179.97438 * 12 11 10 14 14 O 1.21601 * 120.00131 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00129 * 180.02562 * 13 12 11 16 16 C 1.39633 * 120.00061 * 179.97438 * 15 13 12 17 17 N 1.30942 * 126.08534 * 0.02983 * 16 15 13 18 18 N 1.39912 * 108.87804 * 179.75889 * 17 16 15 19 19 H 0.96995 * 125.66227 * 180.25480 * 18 17 16 20 20 C 1.34143 * 108.67574 * 0.36853 * 18 17 16 21 21 C 1.38180 * 107.53908 * 359.63935 * 20 18 17 22 22 C 1.47080 * 126.46382 * 180.22871 * 21 20 18 23 23 O 1.21545 * 120.00383 * 179.97438 * 22 21 20 24 24 O 1.34784 * 119.99612 * 359.97438 * 22 21 20 25 25 C 1.40045 * 120.20321 * 0.23692 * 12 11 10 26 26 C 1.36302 * 120.10268 * 359.48089 * 25 12 11 27 27 H 0.96996 * 119.99828 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.05793 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.94951 * 180.02562 * 11 10 9 30 30 H 0.96997 * 120.00100 * 0.02562 * 15 13 12 31 31 H 1.07998 * 126.22927 * 179.90498 * 20 18 17 32 32 H 0.96701 * 116.99477 * 179.97438 * 24 22 21 33 33 H 1.07998 * 119.94943 * 179.72055 * 25 12 11 34 34 H 1.08005 * 120.05447 * 180.25814 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2372 0.2867 9 6 1.3533 -2.4066 -0.3762 10 6 1.8269 -3.6494 0.0891 11 6 1.1919 -4.7986 -0.2769 12 6 0.0708 -4.7455 -1.1145 13 6 -0.6129 -5.9926 -1.5083 14 8 -0.2030 -7.0642 -1.1053 15 7 -1.6918 -5.9439 -2.3147 16 6 -2.3384 -7.1240 -2.6878 17 7 -2.0007 -8.3361 -2.3256 18 7 -2.8946 -9.2460 -2.9006 19 1 -2.8711 -10.2092 -2.7890 20 6 -3.7883 -8.5653 -3.6337 21 6 -3.4786 -7.2229 -3.5265 22 6 -4.1958 -6.1070 -4.1619 23 8 -3.8199 -4.9645 -3.9866 24 8 -5.2698 -6.3514 -4.9387 25 6 -0.4002 -3.5130 -1.5839 26 6 0.2249 -2.3582 -1.2185 27 1 -0.4850 0.8400 -0.0004 28 1 2.6916 -3.6914 0.7347 29 1 1.5539 -5.7516 0.0796 30 1 -2.0186 -5.0893 -2.6365 31 1 -4.6040 -8.9889 -4.2006 32 1 -5.7086 -5.5859 -5.3345 33 1 -1.2624 -3.4772 -2.2332 34 1 -0.1416 -1.4078 -1.5776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:19 Heat of formation + Delta-G solvation = -56.111624 kcal Electronic energy + Delta-G solvation = -22921.135730 eV Core-core repulsion = 19205.258487 eV Total energy + Delta-G solvation = -3715.877243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.65025 -40.78008 -40.53822 -38.96561 -36.97709 -35.88824 -35.71516 -32.55277 -31.70131 -31.37302 -31.25420 -27.87413 -25.06857 -24.75952 -22.98891 -22.81029 -21.66167 -20.84760 -19.40654 -19.31671 -18.74058 -18.30889 -17.51075 -17.08411 -16.96737 -16.89811 -16.10834 -15.79600 -15.76859 -15.20266 -15.14698 -14.59633 -14.51687 -13.96000 -13.93849 -13.73674 -13.27845 -12.86849 -12.70625 -12.48655 -12.42600 -12.24842 -12.08739 -11.79243 -11.61375 -11.41753 -11.14541 -10.80410 -10.15616 -9.75149 -9.61279 -9.43522 -8.82397 -6.51805 0.23152 0.40122 0.98751 1.12757 1.39460 1.43824 1.44687 1.56754 1.97371 2.04451 2.16193 2.29279 2.55178 2.75926 3.44574 3.64959 3.89135 4.14178 4.25313 4.30572 4.40994 4.61279 4.81571 4.89865 4.99670 5.10368 5.24569 5.48831 5.56680 5.66929 5.74694 5.85373 5.95930 6.04453 6.17513 6.34450 6.50211 6.70912 6.72992 6.84226 7.10531 7.22657 8.12897 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.003421 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.912131 B = 8183.057574 C = 9350.011214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.091 0.909 9 C 0.104 3.896 10 C -0.250 4.250 11 C -0.024 4.024 12 C -0.299 4.299 13 C 0.565 3.435 14 O -0.553 6.553 15 N -0.638 5.638 16 C 0.338 3.662 17 N -0.332 5.332 18 N -0.436 5.436 19 H 0.467 0.533 20 C 0.197 3.803 21 C -0.340 4.340 22 C 0.569 3.431 23 O -0.567 6.567 24 O -0.497 6.497 25 C -0.055 4.055 26 C -0.196 4.196 27 H 0.298 0.702 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.429 0.571 31 H 0.259 0.741 32 H 0.433 0.567 33 H 0.112 0.888 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 -10.110 -10.062 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.109 0.891 9 C 0.101 3.899 10 C -0.269 4.269 11 C -0.043 4.043 12 C -0.303 4.303 13 C 0.360 3.640 14 O -0.431 6.431 15 N -0.290 5.290 16 C 0.079 3.921 17 N -0.163 5.163 18 N -0.142 5.142 19 H 0.316 0.684 20 C 0.040 3.960 21 C -0.354 4.354 22 C 0.415 3.585 23 O -0.460 6.460 24 O -0.310 6.310 25 C -0.074 4.074 26 C -0.215 4.215 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.271 0.729 31 H 0.274 0.726 32 H 0.295 0.705 33 H 0.130 0.870 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.640 -11.379 -8.832 17.908 hybrid contribution -0.590 1.691 -0.527 1.867 sum -11.230 -9.688 -9.359 17.538 Atomic orbital electron populations 1.69777 1.09429 1.31819 1.30739 1.27022 0.95539 1.05101 0.90733 0.85012 0.79488 0.75180 0.79263 1.17779 1.18505 1.18735 1.20214 0.98907 0.92050 1.37947 0.89118 1.18153 0.90965 0.93124 0.87698 1.20865 1.05251 0.92425 1.08362 1.20486 0.92870 0.97435 0.93557 1.18949 1.05041 0.91100 1.15249 1.18747 0.78869 0.89600 0.76828 1.90696 1.65433 1.31660 1.55313 1.43175 1.29285 1.07462 1.49044 1.19539 0.91393 0.87478 0.93646 1.77991 1.16018 0.97629 1.24657 1.46117 1.21223 1.10646 1.36243 0.68369 1.24013 0.92967 0.89048 0.89963 1.19180 1.04738 0.94386 1.17143 1.19506 0.77675 0.86387 0.74896 1.90869 1.67905 1.24869 1.62330 1.84448 1.41072 1.45136 1.60362 1.20690 0.97571 0.91940 0.97189 1.20991 1.00604 0.97113 1.02797 0.89018 0.87100 0.87431 0.72877 0.72556 0.70491 0.87028 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.69 10.95 21.87 0.24 -38.46 16 2 C 0.04 1.67 5.14 85.35 0.44 2.11 16 3 Si 0.99 34.95 29.60 68.60 2.03 36.98 16 4 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 5 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.46 -23.61 9.04 23.45 0.21 -23.39 16 8 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.10 5.52 5.57 -21.28 -0.12 5.40 16 10 C -0.25 -12.60 9.73 22.47 0.22 -12.38 16 11 C -0.02 -1.21 9.52 22.26 0.21 -1.00 16 12 C -0.30 -14.73 5.89 -19.94 -0.12 -14.85 16 13 C 0.56 26.72 7.73 86.71 0.67 27.39 16 14 O -0.55 -28.36 15.04 -4.03 -0.06 -28.42 16 15 N -0.64 -26.02 5.36 -309.70 -1.66 -27.68 16 16 C 0.34 11.97 7.78 133.96 1.04 13.01 16 17 N -0.33 -11.32 10.85 -53.94 -0.59 -11.90 16 18 N -0.44 -7.88 7.27 -56.30 -0.41 -8.29 16 19 H 0.47 4.21 8.96 -213.45 -1.91 2.29 16 20 C 0.20 2.72 11.85 84.33 1.00 3.72 16 21 C -0.34 -8.52 6.14 -20.07 -0.12 -8.65 16 22 C 0.57 13.68 8.32 70.14 0.58 14.27 16 23 O -0.57 -18.22 15.99 19.69 0.31 -17.91 16 24 O -0.50 -6.61 13.26 -56.95 -0.76 -7.37 16 25 C -0.05 -2.65 9.47 22.26 0.21 -2.44 16 26 C -0.20 -10.18 8.64 22.47 0.19 -9.98 16 27 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 28 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 29 H 0.11 5.14 7.63 -2.91 -0.02 5.12 16 30 H 0.43 16.88 4.95 -92.71 -0.46 16.42 16 31 H 0.26 0.17 8.06 -2.91 -0.02 0.15 16 32 H 0.43 2.31 9.11 -74.06 -0.67 1.63 16 33 H 0.11 4.82 6.37 -2.91 -0.02 4.80 16 34 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 Total: -1.00 -77.93 309.96 1.71 -76.21 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -1.82 Total: 33.62 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 4.42 Total: -6.79 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -2.42 Total: -86.33 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.50 Total: -53.69 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -77.93 1.71 -76.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.102 kcal (2) G-P(sol) polarization free energy of solvation -77.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds