Wall clock time and date at job start Tue Mar 31 2020 07:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 120.00352 * 2 1 4 4 H 1.48494 * 109.47396 * 240.00159 * 3 2 1 5 5 H 1.48500 * 109.46760 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46747 * 119.99970 * 3 2 1 7 7 C 1.39942 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99772 * 197.88026 * 7 2 1 9 9 C 1.41437 * 119.99795 * 17.88070 * 7 2 1 10 10 C 1.40790 * 120.17435 * 204.44713 * 9 7 2 11 11 C 1.37710 * 120.04286 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41159 * 359.69763 * 11 10 9 13 13 C 1.39888 * 120.35916 * 0.55829 * 12 11 10 14 14 C 1.47858 * 120.02974 * 179.74169 * 13 12 11 15 15 O 1.21555 * 119.99977 * 179.72589 * 14 13 12 16 16 N 1.34778 * 119.99486 * 359.72402 * 14 13 12 17 17 C 1.40131 * 119.99669 * 180.02562 * 16 14 13 18 18 C 1.39797 * 125.68127 * 359.97438 * 17 16 14 19 19 C 1.38014 * 107.62489 * 179.73507 * 18 17 16 20 20 C 1.47023 * 126.43020 * 180.02562 * 19 18 17 21 21 O 1.21554 * 119.99546 * 359.97438 * 20 19 18 22 22 O 1.34810 * 120.00402 * 180.02562 * 20 19 18 23 23 N 1.36738 * 107.14741 * 0.02562 * 19 18 17 24 24 H 0.96995 * 126.08509 * 179.97438 * 23 19 18 25 25 N 1.31345 * 125.68298 * 179.68833 * 17 16 14 26 26 C 1.39041 * 119.94283 * 359.46614 * 13 12 11 27 27 H 0.97008 * 119.99400 * 359.97438 * 1 2 3 28 28 H 1.08008 * 119.97703 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.79236 * 179.97438 * 11 10 9 30 30 H 1.08005 * 119.81675 * 180.27422 * 12 11 10 31 31 H 0.96994 * 120.00351 * 359.97438 * 16 14 13 32 32 H 1.07998 * 126.18830 * 359.70545 * 18 17 16 33 33 H 0.96700 * 117.00054 * 179.97438 * 22 20 19 34 34 H 1.08000 * 120.20134 * 180.22942 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0487 -1.2347 0.2866 9 6 1.3519 -2.4070 -0.3772 10 6 1.8260 -3.6500 0.0836 11 6 1.1855 -4.8120 -0.2852 12 6 0.0707 -4.7678 -1.1037 13 6 -0.4117 -3.5425 -1.5757 14 6 -1.6002 -3.5042 -2.4545 15 8 -2.0219 -2.4388 -2.8603 16 7 -2.2157 -4.6506 -2.8057 17 6 -3.3417 -4.6144 -3.6391 18 6 -3.9251 -3.4611 -4.1718 19 6 -5.0029 -3.8541 -4.9390 20 6 -5.9089 -2.9718 -5.6888 21 8 -5.7407 -1.7681 -5.6673 22 8 -6.9268 -3.4975 -6.3994 23 7 -5.0701 -5.2181 -4.8710 24 1 -5.7271 -5.7804 -5.3104 25 7 -4.0216 -5.6587 -4.0541 26 6 0.2238 -2.3602 -1.2129 27 1 -0.4850 0.8402 0.0004 28 1 2.6927 -3.6923 0.7267 29 1 1.5530 -5.7634 0.0702 30 1 -0.4268 -5.6847 -1.3834 31 1 -1.8789 -5.5007 -2.4823 32 1 -3.5928 -2.4460 -4.0115 33 1 -7.4959 -2.8776 -6.8757 34 1 -0.1474 -1.4116 -1.5719 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:07 Heat of formation + Delta-G solvation = -23.719837 kcal Electronic energy + Delta-G solvation = -22769.072345 eV Core-core repulsion = 19054.599715 eV Total energy + Delta-G solvation = -3714.472630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57147 -40.10007 -39.22643 -37.15787 -36.45658 -34.66835 -33.77498 -31.17923 -30.52844 -29.71654 -29.46288 -25.43246 -25.00138 -23.63224 -21.34613 -21.02650 -20.68105 -19.58346 -18.91490 -17.91576 -17.87307 -16.67460 -16.17763 -15.81824 -15.40704 -15.09265 -15.04701 -14.71371 -14.09974 -13.95108 -13.61872 -13.49973 -13.27968 -12.80323 -12.58826 -11.98194 -11.74910 -11.41721 -11.27946 -11.15135 -10.99709 -10.81914 -10.80266 -10.56172 -10.11078 -9.78878 -9.27362 -9.24020 -9.12260 -8.44116 -7.74421 -7.60886 -6.86513 -4.47929 0.69947 1.84826 2.20424 2.41354 2.49929 2.75022 2.86106 3.05580 3.07253 3.13370 3.42350 3.75498 3.88221 4.55320 4.74809 4.77841 5.22091 5.43634 5.51309 5.57216 5.97956 6.01798 6.18017 6.24238 6.60610 6.77104 6.81552 6.89850 6.91878 7.12166 7.18455 7.27554 7.48566 7.60283 7.67068 7.81990 7.92417 8.08491 8.41432 8.57235 8.73519 8.75209 10.08177 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.003599 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.177107 B = 7777.570811 C = 9267.577732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.209 4.209 11 C -0.094 4.094 12 C -0.220 4.220 13 C -0.126 4.126 14 C 0.574 3.426 15 O -0.515 6.515 16 N -0.638 5.638 17 C 0.307 3.693 18 C -0.165 4.165 19 C 0.042 3.958 20 C 0.555 3.445 21 O -0.484 6.484 22 O -0.517 6.517 23 N -0.446 5.446 24 H 0.448 0.552 25 N -0.289 5.289 26 C -0.087 4.087 27 H 0.287 0.713 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.419 0.581 32 H 0.192 0.808 33 H 0.421 0.579 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 -7.386 -8.505 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.229 4.229 11 C -0.113 4.113 12 C -0.240 4.240 13 C -0.130 4.130 14 C 0.365 3.635 15 O -0.390 6.390 16 N -0.289 5.289 17 C 0.053 3.947 18 C -0.197 4.197 19 C -0.085 4.085 20 C 0.396 3.604 21 O -0.368 6.368 22 O -0.330 6.330 23 N -0.163 5.163 24 H 0.295 0.705 25 N -0.124 5.124 26 C -0.107 4.107 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.257 0.743 32 H 0.209 0.791 33 H 0.281 0.719 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.816 -7.509 -8.487 14.992 hybrid contribution -0.275 1.066 -0.336 1.151 sum -10.091 -6.444 -8.822 14.872 Atomic orbital electron populations 1.69767 1.07596 1.30108 1.33029 1.25979 0.94798 1.01632 0.92226 0.86300 0.80123 0.79976 0.80029 1.18647 1.20153 1.18943 1.19583 0.98289 0.91019 1.39716 0.89956 1.17581 0.91105 0.92533 0.89180 1.21136 1.03489 0.92698 1.05530 1.20438 0.95788 0.96881 0.98158 1.20341 1.01451 0.94446 1.07726 1.19204 0.95957 0.95759 1.02058 1.19074 0.83202 0.81741 0.79436 1.90645 1.64926 1.29522 1.53863 1.43010 1.25994 1.12067 1.47871 1.19019 0.90275 0.91466 0.93969 1.22461 0.95072 1.02030 1.00097 1.20083 0.99563 0.84384 1.04506 1.19445 0.78552 0.85987 0.76462 1.91015 1.70888 1.15008 1.59910 1.84530 1.41183 1.45984 1.61320 1.46181 1.25587 1.04034 1.40467 0.70534 1.77311 1.01754 1.19751 1.13562 1.21649 0.96334 0.96264 0.96423 0.90198 0.88434 0.88645 0.89034 0.74309 0.79147 0.71918 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.00 10.96 55.55 0.61 -19.39 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 18.28 29.60 -169.99 -5.03 13.25 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.58 9.05 -37.73 -0.34 -11.92 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 9 C 0.10 2.50 5.57 -106.87 -0.60 1.90 16 10 C -0.21 -4.73 9.78 -38.81 -0.38 -5.11 16 11 C -0.09 -1.91 10.01 -39.73 -0.40 -2.31 16 12 C -0.22 -4.36 9.55 -38.92 -0.37 -4.73 16 13 C -0.13 -2.82 5.87 -105.05 -0.62 -3.43 16 14 C 0.57 11.92 7.74 -12.32 -0.10 11.83 16 15 O -0.52 -11.94 13.43 5.32 0.07 -11.87 16 16 N -0.64 -10.82 5.40 -12.11 -0.07 -10.89 16 17 C 0.31 5.07 8.07 -154.54 -1.25 3.83 16 18 C -0.16 -2.77 9.41 -39.08 -0.37 -3.13 16 19 C 0.04 0.57 7.16 -82.20 -0.59 -0.02 16 20 C 0.56 6.55 8.32 34.29 0.29 6.84 16 21 O -0.48 -7.33 17.68 -19.31 -0.34 -7.67 16 22 O -0.52 -3.71 13.44 -40.79 -0.55 -4.25 16 23 N -0.45 -5.18 7.44 33.40 0.25 -4.93 16 24 H 0.45 3.51 8.96 -182.65 -1.64 1.88 16 25 N -0.29 -4.16 12.68 31.33 0.40 -3.76 16 26 C -0.09 -2.20 8.24 -38.44 -0.32 -2.51 16 27 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 28 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 30 H 0.09 1.48 6.38 -52.48 -0.33 1.14 16 31 H 0.42 6.05 6.84 -40.82 -0.28 5.77 16 32 H 0.19 3.66 5.87 -52.49 -0.31 3.35 16 33 H 0.42 1.07 9.11 45.56 0.42 1.48 16 34 H 0.14 3.72 5.74 -52.49 -0.30 3.42 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -30.76 311.07 -7.93 -38.69 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -2.84 Total: 13.21 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -5.12 Total: -7.07 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 1.19 Total: -38.98 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.82 Total: -23.79 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.76 -7.93 -38.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.974 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds