Wall clock time and date at job start Tue Mar 31 2020 08:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48492 * 109.47639 * 239.99919 * 3 2 1 5 5 H 1.48504 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46887 * 119.99713 * 3 2 1 7 7 C 1.39933 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00065 * 162.60702 * 7 2 1 9 9 C 1.41435 * 119.99971 * 342.61101 * 7 2 1 10 10 C 1.40789 * 120.18020 * 154.91083 * 9 7 2 11 11 C 1.37713 * 120.04261 * 179.97438 * 10 9 7 12 12 C 1.38375 * 120.40933 * 359.76069 * 11 10 9 13 13 C 1.39879 * 120.35753 * 0.52137 * 12 11 10 14 14 C 1.47890 * 120.02235 * 179.73622 * 13 12 11 15 15 O 1.21548 * 119.99393 * 179.72140 * 14 13 12 16 16 N 1.34770 * 120.00191 * 359.72352 * 14 13 12 17 17 N 1.40103 * 120.00203 * 179.97438 * 16 14 13 18 18 C 1.38990 * 120.00313 * 180.02562 * 17 16 14 19 19 C 1.39070 * 119.69053 * 180.02562 * 18 17 16 20 20 C 1.38377 * 119.15363 * 180.02562 * 19 18 17 21 21 C 1.38758 * 118.54216 * 359.97438 * 20 19 18 22 22 C 1.38372 * 119.29791 * 0.02562 * 21 20 19 23 23 F 1.35099 * 119.60152 * 180.02562 * 22 21 20 24 24 N 1.32142 * 120.79598 * 359.72366 * 22 21 20 25 25 C 1.39034 * 119.95214 * 359.45634 * 13 12 11 26 26 H 0.97000 * 119.99873 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97600 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.79417 * 180.02562 * 11 10 9 29 29 H 1.07998 * 119.81675 * 180.27234 * 12 11 10 30 30 H 0.97005 * 120.00307 * 0.27920 * 16 14 13 31 31 H 0.96998 * 119.99652 * 359.97438 * 17 16 14 32 32 H 1.07995 * 120.42084 * 359.97020 * 19 18 17 33 33 H 1.08006 * 120.72870 * 180.02562 * 20 19 18 34 34 H 1.07988 * 120.35285 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.20435 * 180.25566 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2773 2.7465 0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0079 -1.2118 -0.0005 8 1 3.0509 -1.2331 -0.2801 9 6 1.3493 -2.4089 0.3650 10 6 1.8188 -3.6484 -0.1096 11 6 1.1756 -4.8123 0.2486 12 6 0.0693 -4.7742 1.0788 13 6 -0.4152 -3.5515 1.5554 14 6 -1.6016 -3.5190 2.4376 15 8 -2.0191 -2.4567 2.8555 16 7 -2.2198 -4.6671 2.7783 17 7 -3.3435 -4.6363 3.6145 18 6 -3.9807 -5.8204 3.9663 19 6 -5.0959 -5.7822 4.7963 20 6 -5.7214 -6.9677 5.1399 21 6 -5.2095 -8.1566 4.6399 22 6 -4.0963 -8.1222 3.8187 23 9 -3.5932 -9.2760 3.3280 24 7 -3.5231 -6.9740 3.5038 25 6 0.2230 -2.3674 1.2037 26 1 -0.4850 0.8401 0.0004 27 1 2.6845 -3.6866 -0.7542 28 1 1.5395 -5.7610 -0.1174 29 1 -0.4251 -5.6931 1.3572 30 1 -1.8842 -5.5152 2.4481 31 1 -3.6763 -3.7886 3.9486 32 1 -5.4684 -4.8394 5.1687 33 1 -6.5895 -6.9677 5.7825 34 1 -5.6744 -9.0987 4.8896 35 1 -0.1451 -1.4216 1.5726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804767708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:03 Heat of formation + Delta-G solvation = 18.608108 kcal Electronic energy + Delta-G solvation = -22562.266613 eV Core-core repulsion = 18862.002250 eV Total energy + Delta-G solvation = -3700.264363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.13789 -40.45273 -39.26096 -37.21792 -35.73605 -33.82727 -32.72057 -32.18018 -30.25981 -29.52466 -28.32215 -25.36560 -23.93011 -23.48341 -22.39528 -21.03027 -20.14369 -18.78835 -17.97197 -17.63167 -16.43816 -16.25506 -16.23249 -16.19605 -15.44232 -15.06022 -14.75546 -14.59463 -14.10424 -13.87954 -13.68895 -13.36088 -13.25014 -12.82379 -12.58392 -12.51325 -11.79461 -11.58995 -11.20522 -11.13276 -10.81225 -10.56697 -10.18541 -10.16790 -9.99711 -9.76887 -9.33851 -9.32549 -9.26434 -7.82344 -7.59132 -7.45128 -6.85444 -4.47308 0.84337 1.04961 2.01117 2.06848 2.76297 3.04589 3.06155 3.12427 3.22378 3.45000 3.72297 3.87923 4.20471 4.51735 4.56342 4.69026 4.90322 5.07589 5.47131 5.52069 5.52576 5.60694 5.91530 6.01802 6.21893 6.30452 6.60463 6.75239 6.89696 6.93227 7.11573 7.15798 7.29243 7.55353 7.64373 7.79531 7.85520 7.95197 8.10100 8.42533 8.72551 8.75073 8.78141 10.09394 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.003092 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.519799 B = 9053.535514 C =10011.009519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.218 4.218 13 C -0.120 4.120 14 C 0.567 3.433 15 O -0.548 6.548 16 N -0.525 5.525 17 N -0.507 5.507 18 C 0.444 3.556 19 C -0.246 4.246 20 C 0.000 4.000 21 C -0.263 4.263 22 C 0.364 3.636 23 F -0.112 7.112 24 N -0.582 5.582 25 C -0.088 4.088 26 H 0.286 0.714 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.432 0.568 31 H 0.443 0.557 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.961 -10.433 8.481 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.097 3.903 10 C -0.227 4.227 11 C -0.113 4.113 12 C -0.238 4.238 13 C -0.125 4.125 14 C 0.358 3.642 15 O -0.425 6.425 16 N -0.275 5.275 17 N -0.232 5.232 18 C 0.206 3.794 19 C -0.273 4.273 20 C -0.025 4.025 21 C -0.288 4.288 22 C 0.210 3.790 23 F -0.091 7.091 24 N -0.308 5.308 25 C -0.108 4.108 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.276 0.724 31 H 0.289 0.711 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.564 -9.492 8.072 15.707 hybrid contribution -0.241 0.333 0.248 0.480 sum -9.804 -9.159 8.320 15.787 Atomic orbital electron populations 1.69772 1.07590 1.29957 1.33482 1.25972 0.94797 1.01605 0.92249 0.86300 0.80096 0.79973 0.80026 1.18916 1.20211 1.18692 1.19567 0.98103 0.90931 1.40160 0.89965 1.17578 0.91092 0.92548 0.89110 1.21145 1.03401 0.92744 1.05432 1.20448 0.95860 0.96916 0.98047 1.20384 1.01573 0.94516 1.07316 1.19165 0.95710 0.95725 1.01866 1.19121 0.83339 0.81619 0.80149 1.90711 1.66417 1.29660 1.55678 1.45168 1.22691 1.11859 1.47748 1.43311 1.24441 1.06394 1.49082 1.17713 0.88249 0.84123 0.89310 1.21181 0.99136 1.00728 1.06230 1.21108 0.96969 0.90314 0.94154 1.21440 1.00248 1.00944 1.06196 1.17616 0.89699 0.80552 0.91178 1.91634 1.87116 1.44315 1.86037 1.66109 1.36279 0.97359 1.31015 1.21604 0.96388 0.96117 0.96689 0.90329 0.88386 0.88592 0.89027 0.72368 0.71145 0.83930 0.83589 0.83846 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.34 10.97 55.55 0.61 -19.73 16 2 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 3 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.81 9.05 -37.73 -0.34 -12.15 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.58 5.57 -106.87 -0.59 1.98 16 10 C -0.21 -4.84 9.78 -38.81 -0.38 -5.22 16 11 C -0.09 -2.00 10.01 -39.72 -0.40 -2.40 16 12 C -0.22 -4.60 9.55 -38.92 -0.37 -4.97 16 13 C -0.12 -2.80 5.87 -105.04 -0.62 -3.41 16 14 C 0.57 12.23 7.89 -12.31 -0.10 12.13 16 15 O -0.55 -13.05 16.17 5.32 0.09 -12.97 16 16 N -0.52 -9.31 6.24 30.54 0.19 -9.12 16 17 N -0.51 -7.50 6.42 31.12 0.20 -7.30 16 18 C 0.44 5.81 7.59 -155.02 -1.18 4.64 16 19 C -0.25 -2.32 9.93 -39.22 -0.39 -2.71 16 20 C 0.00 0.00 10.16 -39.34 -0.40 -0.40 16 21 C -0.26 -2.37 10.08 -39.34 -0.40 -2.76 16 22 C 0.36 4.48 8.40 -17.37 -0.15 4.34 16 23 F -0.11 -1.41 17.29 2.25 0.04 -1.37 16 24 N -0.58 -8.34 9.38 -12.78 -0.12 -8.46 16 25 C -0.09 -2.29 8.23 -38.44 -0.32 -2.60 16 26 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 27 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 28 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.09 1.67 6.38 -52.49 -0.33 1.34 16 30 H 0.43 7.37 5.97 -182.59 -1.09 6.28 16 31 H 0.44 6.05 7.99 -182.60 -1.46 4.59 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 3.78 5.77 -52.49 -0.30 3.48 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -29.57 317.23 -9.81 -39.38 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.85 Total: 13.21 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -5.71 Total: -11.82 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.88 Total: -44.62 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.57 -9.81 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804767708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.989 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds