Wall clock time and date at job start Tue Mar 31 2020 08:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48492 * 109.47639 * 239.99919 * 3 2 1 5 5 H 1.48504 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46887 * 119.99713 * 3 2 1 7 7 C 1.39933 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00065 * 162.60702 * 7 2 1 9 9 C 1.41435 * 119.99971 * 342.61101 * 7 2 1 10 10 C 1.40789 * 120.18020 * 154.91083 * 9 7 2 11 11 C 1.37713 * 120.04261 * 179.97438 * 10 9 7 12 12 C 1.38375 * 120.40933 * 359.76069 * 11 10 9 13 13 C 1.39879 * 120.35753 * 0.52137 * 12 11 10 14 14 C 1.47890 * 120.02235 * 179.73622 * 13 12 11 15 15 O 1.21548 * 119.99393 * 179.72140 * 14 13 12 16 16 N 1.34770 * 120.00191 * 359.72352 * 14 13 12 17 17 N 1.40103 * 120.00203 * 179.97438 * 16 14 13 18 18 C 1.38990 * 120.00313 * 180.02562 * 17 16 14 19 19 C 1.39070 * 119.69053 * 180.02562 * 18 17 16 20 20 C 1.38377 * 119.15363 * 180.02562 * 19 18 17 21 21 C 1.38758 * 118.54216 * 359.97438 * 20 19 18 22 22 C 1.38372 * 119.29791 * 0.02562 * 21 20 19 23 23 F 1.35099 * 119.60152 * 180.02562 * 22 21 20 24 24 N 1.32142 * 120.79598 * 359.72366 * 22 21 20 25 25 C 1.39034 * 119.95214 * 359.45634 * 13 12 11 26 26 H 0.97000 * 119.99873 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97600 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.79417 * 180.02562 * 11 10 9 29 29 H 1.07998 * 119.81675 * 180.27234 * 12 11 10 30 30 H 0.97005 * 120.00307 * 0.27920 * 16 14 13 31 31 H 0.96998 * 119.99652 * 359.97438 * 17 16 14 32 32 H 1.07995 * 120.42084 * 359.97020 * 19 18 17 33 33 H 1.08006 * 120.72870 * 180.02562 * 20 19 18 34 34 H 1.07988 * 120.35285 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.20435 * 180.25566 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2773 2.7465 0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0079 -1.2118 -0.0005 8 1 3.0509 -1.2331 -0.2801 9 6 1.3493 -2.4089 0.3650 10 6 1.8188 -3.6484 -0.1096 11 6 1.1756 -4.8123 0.2486 12 6 0.0693 -4.7742 1.0788 13 6 -0.4152 -3.5515 1.5554 14 6 -1.6016 -3.5190 2.4376 15 8 -2.0191 -2.4567 2.8555 16 7 -2.2198 -4.6671 2.7783 17 7 -3.3435 -4.6363 3.6145 18 6 -3.9807 -5.8204 3.9663 19 6 -5.0959 -5.7822 4.7963 20 6 -5.7214 -6.9677 5.1399 21 6 -5.2095 -8.1566 4.6399 22 6 -4.0963 -8.1222 3.8187 23 9 -3.5932 -9.2760 3.3280 24 7 -3.5231 -6.9740 3.5038 25 6 0.2230 -2.3674 1.2037 26 1 -0.4850 0.8401 0.0004 27 1 2.6845 -3.6866 -0.7542 28 1 1.5395 -5.7610 -0.1174 29 1 -0.4251 -5.6931 1.3572 30 1 -1.8842 -5.5152 2.4481 31 1 -3.6763 -3.7886 3.9486 32 1 -5.4684 -4.8394 5.1687 33 1 -6.5895 -6.9677 5.7825 34 1 -5.6744 -9.0987 4.8896 35 1 -0.1451 -1.4216 1.5726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804767708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:03 Heat of formation + Delta-G solvation = 0.842939 kcal Electronic energy + Delta-G solvation = -22563.036968 eV Core-core repulsion = 18862.002250 eV Total energy + Delta-G solvation = -3701.034718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.02965 -41.51903 -40.72174 -38.95064 -37.05725 -35.64894 -33.63714 -33.44021 -31.85180 -31.33386 -29.45594 -27.21201 -25.05010 -24.49712 -23.70781 -22.83724 -21.67008 -20.10387 -19.35508 -18.92566 -17.83921 -17.52378 -17.15572 -17.01817 -16.86336 -16.58803 -16.23401 -16.18447 -15.71536 -15.10620 -14.83553 -14.73129 -14.54275 -14.32964 -14.08480 -13.53691 -13.17905 -13.02457 -12.83957 -12.74115 -12.55341 -12.23225 -11.98796 -11.56074 -11.11848 -11.08658 -11.01998 -10.84032 -10.43598 -9.59776 -9.44252 -8.69410 -8.60772 -6.40493 0.00742 0.18687 0.37268 0.78819 0.97176 1.37322 1.47719 1.50994 1.95881 2.19015 2.25951 2.64470 2.74554 3.20035 3.64694 3.68805 3.81210 3.92903 4.22569 4.35105 4.37174 4.51741 4.75102 4.84104 4.97030 5.04471 5.11193 5.20068 5.26922 5.35680 5.46250 5.69914 5.81807 5.87086 5.97528 6.01214 6.23540 6.38364 6.56133 6.77178 6.85366 6.89689 7.22583 8.28560 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.003092 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.519799 B = 9053.535514 C =10011.009519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.030 3.970 3 Si 0.984 3.016 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.495 4.495 8 H 0.087 0.913 9 C 0.070 3.930 10 C -0.212 4.212 11 C -0.092 4.092 12 C -0.204 4.204 13 C -0.129 4.129 14 C 0.564 3.436 15 O -0.580 6.580 16 N -0.510 5.510 17 N -0.517 5.517 18 C 0.417 3.583 19 C -0.232 4.232 20 C 0.011 3.989 21 C -0.240 4.240 22 C 0.329 3.671 23 F -0.122 7.122 24 N -0.616 5.616 25 C -0.123 4.123 26 H 0.288 0.712 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.435 0.565 31 H 0.446 0.554 32 H 0.170 0.830 33 H 0.195 0.805 34 H 0.175 0.825 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 -12.388 9.699 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.524 4.524 8 H 0.105 0.895 9 C 0.067 3.933 10 C -0.232 4.232 11 C -0.110 4.110 12 C -0.223 4.223 13 C -0.133 4.133 14 C 0.354 3.646 15 O -0.460 6.460 16 N -0.257 5.257 17 N -0.247 5.247 18 C 0.181 3.819 19 C -0.258 4.258 20 C -0.014 4.014 21 C -0.264 4.264 22 C 0.176 3.824 23 F -0.102 7.102 24 N -0.342 5.342 25 C -0.144 4.144 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.156 0.844 29 H 0.143 0.857 30 H 0.280 0.720 31 H 0.291 0.709 32 H 0.188 0.812 33 H 0.212 0.788 34 H 0.192 0.808 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.039 -11.553 9.299 18.488 hybrid contribution 0.033 0.609 -0.025 0.611 sum -11.006 -10.944 9.273 18.080 Atomic orbital electron populations 1.69870 1.09223 1.30819 1.34963 1.26861 0.95437 1.04966 0.91244 0.85219 0.78692 0.75376 0.80275 1.17688 1.19619 1.18477 1.19856 0.98534 0.92004 1.41989 0.89541 1.17931 0.91648 0.93953 0.89722 1.21438 1.03848 0.92660 1.05274 1.20896 0.95138 0.97925 0.97076 1.20792 1.01064 0.94816 1.05674 1.19429 0.96204 0.95794 1.01909 1.18799 0.83363 0.82161 0.80277 1.90678 1.67325 1.30976 1.57036 1.44721 1.23272 1.10494 1.47186 1.43407 1.23969 1.07495 1.49815 1.18086 0.89625 0.83179 0.90962 1.21617 0.97178 1.02895 1.04100 1.21708 0.97525 0.88697 0.93442 1.21901 0.98083 1.02996 1.03402 1.18035 0.91367 0.79884 0.93124 1.91605 1.87501 1.44592 1.86452 1.65899 1.37740 0.98398 1.32123 1.21410 0.98102 0.96051 0.98823 0.90151 0.86947 0.84422 0.85729 0.72014 0.70869 0.81247 0.78785 0.80770 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.17 10.97 21.82 0.24 -44.93 16 2 C 0.03 1.56 5.14 85.25 0.44 2.00 16 3 Si 0.98 38.96 29.59 68.60 2.03 40.99 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.49 -26.57 9.05 23.47 0.21 -26.36 16 8 H 0.09 4.36 7.90 -2.91 -0.02 4.33 16 9 C 0.07 3.77 5.57 -21.32 -0.12 3.65 16 10 C -0.21 -9.92 9.78 22.77 0.22 -9.70 16 11 C -0.09 -3.76 10.01 22.18 0.22 -3.54 16 12 C -0.20 -8.41 9.55 22.70 0.22 -8.19 16 13 C -0.13 -6.18 5.87 -20.13 -0.12 -6.29 16 14 C 0.56 25.13 7.89 86.80 0.68 25.81 16 15 O -0.58 -29.03 16.17 -3.87 -0.06 -29.10 16 16 N -0.51 -18.20 6.24 -175.58 -1.10 -19.30 16 17 N -0.52 -15.19 6.42 -55.46 -0.36 -15.54 16 18 C 0.42 10.33 7.59 133.04 1.01 11.34 16 19 C -0.23 -3.59 9.93 22.50 0.22 -3.37 16 20 C 0.01 0.12 10.16 22.43 0.23 0.35 16 21 C -0.24 -3.37 10.08 22.43 0.23 -3.14 16 22 C 0.33 7.52 8.40 84.68 0.71 8.23 16 23 F -0.12 -2.96 17.29 44.97 0.78 -2.19 16 24 N -0.62 -17.03 9.38 -194.34 -1.82 -18.85 16 25 C -0.12 -6.78 8.23 23.01 0.19 -6.59 16 26 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 27 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 28 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 29 H 0.12 4.27 6.38 -2.91 -0.02 4.25 16 30 H 0.44 14.68 5.97 -213.31 -1.27 13.41 16 31 H 0.45 12.22 7.99 -213.32 -1.70 10.52 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.17 1.36 8.06 -2.92 -0.02 1.34 16 35 H 0.10 6.33 5.77 -2.91 -0.02 6.31 16 Total: -1.00 -69.76 317.23 2.26 -67.50 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -1.80 Total: 37.22 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.35 Total: -15.81 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -3.03 Total: -98.62 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.06 Total: -29.10 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -69.76 2.26 -67.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804767708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.346 kcal (2) G-P(sol) polarization free energy of solvation -69.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds