Wall clock time and date at job start Tue Mar 31 2020 08:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42099 * 110.54015 * 2 1 4 4 O 1.42098 * 110.54258 * 223.25347 * 2 1 3 5 5 C 1.76193 * 104.45257 * 111.62578 * 2 1 3 6 6 C 1.38270 * 119.93934 * 115.02649 * 5 2 1 7 7 C 1.38095 * 120.09699 * 180.02562 * 6 5 2 8 8 C 1.38947 * 119.97612 * 359.97438 * 7 6 5 9 9 N 1.39670 * 120.05831 * 180.02562 * 8 7 6 10 10 C 1.46503 * 120.00053 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47437 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47432 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47389 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99763 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99963 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00056 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99969 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47102 * 90.00192 * 17 15 13 19 19 H 1.48502 * 109.46879 * 209.99785 * 17 15 13 20 20 H 1.48495 * 109.47177 * 330.00036 * 17 15 13 21 21 C 1.38846 * 119.87742 * 359.72463 * 8 7 6 22 22 C 1.38344 * 119.90021 * 0.52912 * 21 8 7 23 23 F 1.35104 * 119.98639 * 179.76651 * 22 21 8 24 24 H 1.08992 * 109.47371 * 308.37040 * 1 2 3 25 25 H 1.08999 * 109.47476 * 68.38003 * 1 2 3 26 26 H 1.09001 * 109.46982 * 188.37635 * 1 2 3 27 27 H 1.07999 * 119.95186 * 0.02562 * 6 5 2 28 28 H 1.08006 * 120.01154 * 180.02562 * 7 6 5 29 29 H 0.96997 * 120.00460 * 359.97438 * 9 8 7 30 30 H 1.09002 * 109.46920 * 300.00207 * 10 9 8 31 31 H 1.09007 * 109.47197 * 59.99737 * 10 9 8 32 32 H 1.09002 * 109.47310 * 300.00061 * 11 10 9 33 33 H 1.08999 * 109.47223 * 59.99472 * 11 10 9 34 34 H 1.09002 * 109.46848 * 300.00253 * 12 11 10 35 35 H 1.09007 * 109.47274 * 59.99785 * 12 11 10 36 36 H 0.97002 * 120.00152 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.04565 * 180.27290 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.9168 -1.8377 1.6896 7 6 3.2625 -2.3339 2.9311 8 6 2.9443 -1.6173 4.0782 9 7 3.2937 -2.1173 5.3347 10 6 2.9581 -1.3605 6.5434 11 6 3.4480 -2.1237 7.7756 12 6 3.0970 -1.3336 9.0379 13 6 3.5790 -2.0857 10.2516 14 1 4.0855 -3.0323 10.1343 15 6 3.3744 -1.5648 11.5116 16 7 3.7955 -2.2208 12.5708 17 14 2.4989 0.0729 11.7144 18 1 1.0380 -0.1595 11.8440 19 1 3.0016 0.7553 12.9338 20 1 2.7611 0.9248 10.5267 21 6 2.2841 -0.4005 3.9728 22 6 1.9354 0.0893 2.7268 23 9 1.2887 1.2709 2.6224 24 1 -0.3634 0.6379 0.8056 25 1 -0.3634 0.3786 -0.9553 26 1 -0.3633 -1.0167 0.1497 27 1 3.1647 -2.3948 0.7982 28 1 3.7808 -3.2781 3.0103 29 1 3.7585 -2.9655 5.4072 30 1 3.4395 -0.3833 6.5056 31 1 1.8773 -1.2309 6.6027 32 1 2.9662 -3.1007 7.8132 33 1 4.5286 -2.2536 7.7166 34 1 3.5785 -0.3564 9.0005 35 1 2.0162 -1.2041 9.0967 36 1 3.6518 -1.8541 13.4573 37 1 2.0393 0.1608 4.8624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:43 Heat of formation + Delta-G solvation = -96.033724 kcal Electronic energy + Delta-G solvation = -21460.793007 eV Core-core repulsion = 17858.708601 eV Total energy + Delta-G solvation = -3602.084406 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.41840 -39.65455 -37.25343 -36.47060 -36.10388 -33.83851 -31.96921 -30.93399 -30.00592 -29.51602 -26.92140 -23.90336 -23.03904 -21.97069 -20.48047 -19.38039 -18.36789 -17.64107 -17.14453 -16.71386 -16.47984 -15.92156 -15.77649 -15.58333 -15.20408 -15.09642 -14.43831 -14.18301 -13.80692 -13.58468 -13.39628 -13.31224 -13.08852 -12.77081 -12.32280 -12.23609 -12.17157 -12.07006 -11.83684 -11.36476 -11.23639 -11.10035 -10.91902 -10.54950 -10.16658 -9.98127 -9.83885 -9.35845 -9.18176 -8.66147 -7.97737 -6.16207 -4.16040 -0.15208 0.70638 0.98091 2.64105 3.09341 3.16750 3.21942 3.30537 3.32014 3.61012 3.81662 3.99468 4.34071 4.38726 4.45102 4.67118 4.83193 5.05709 5.11150 5.16972 5.30488 5.32080 5.34939 5.48251 5.64242 5.70954 5.79127 5.85287 6.19712 6.21369 6.45468 6.58743 6.94982 7.05935 7.19564 7.40111 7.64035 8.39011 8.87026 9.45172 10.96983 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.002631 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.823922 B =10641.439625 C =11257.552714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.510 3.490 3 O -0.935 6.935 4 O -0.943 6.943 5 C -0.763 4.763 6 C 0.048 3.952 7 C -0.227 4.227 8 C 0.297 3.703 9 N -0.721 5.721 10 C 0.107 3.893 11 C -0.113 4.113 12 C -0.010 4.010 13 C -0.526 4.526 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.254 4.254 22 C 0.235 3.765 23 F -0.127 7.127 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.136 0.864 29 H 0.408 0.592 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.264 0.736 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 1.971 -24.888 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.689 3.311 3 O -0.933 6.933 4 O -0.941 6.941 5 C -0.854 4.854 6 C 0.028 3.972 7 C -0.251 4.251 8 C 0.185 3.815 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.151 4.151 12 C -0.048 4.048 13 C -0.564 4.564 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.278 4.278 22 C 0.213 3.787 23 F -0.105 7.105 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.154 0.846 29 H 0.244 0.756 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.249 2.384 -25.075 25.952 hybrid contribution -0.882 0.430 1.245 1.585 sum -7.131 2.814 -23.831 25.033 Atomic orbital electron populations 1.30249 1.26119 1.12075 1.11826 1.04769 0.77678 0.74563 0.74085 1.93604 1.77071 1.36527 1.86065 1.93547 1.77617 1.61831 1.61064 1.29966 1.25754 1.10462 1.19181 1.20497 0.88017 0.90446 0.98222 1.20779 1.10295 1.03044 0.90988 1.17866 0.87188 0.90295 0.86140 1.45354 1.61106 1.24940 1.02932 1.21886 1.00326 0.95811 0.83593 1.21692 1.00999 0.99426 0.93003 1.19499 0.96430 0.96035 0.92814 1.21061 1.38419 1.07609 0.89270 0.91006 1.25035 0.95163 0.97333 0.95904 1.69905 1.46773 1.38934 0.98306 0.86766 0.80128 0.84417 0.77895 1.20219 1.21255 1.18991 1.20602 1.10839 0.99210 0.97169 1.16673 0.89251 0.79647 0.93130 1.91568 1.78079 1.43958 1.96880 0.85016 0.85084 0.84916 0.83077 0.84604 0.75629 0.91657 0.91706 0.91927 0.91881 0.96302 0.96766 0.92572 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.48 10.79 101.05 1.09 -2.39 16 2 S 2.51 23.35 5.44 -107.50 -0.59 22.76 16 3 O -0.94 -12.24 17.34 -57.54 -1.00 -13.24 16 4 O -0.94 -10.61 16.73 -57.54 -0.96 -11.58 16 5 C -0.76 -7.99 5.59 -39.47 -0.22 -8.21 16 6 C 0.05 0.47 9.49 -39.62 -0.38 0.09 16 7 C -0.23 -2.21 9.89 -39.37 -0.39 -2.60 16 8 C 0.30 3.34 6.65 -83.80 -0.56 2.79 16 9 N -0.72 -8.12 5.73 -58.64 -0.34 -8.46 16 10 C 0.11 1.43 4.91 -4.04 -0.02 1.41 16 11 C -0.11 -1.90 5.27 -26.73 -0.14 -2.04 16 12 C -0.01 -0.21 4.04 -27.88 -0.11 -0.33 16 13 C -0.53 -14.25 9.66 -34.44 -0.33 -14.58 16 14 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 17 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 21 C -0.25 -3.00 9.29 -39.32 -0.37 -3.37 16 22 C 0.23 2.72 7.18 -39.45 -0.28 2.44 16 23 F -0.13 -1.47 15.72 2.25 0.04 -1.43 16 24 H 0.13 0.66 7.58 -51.93 -0.39 0.26 16 25 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.15 1.20 7.20 -52.49 -0.38 0.82 16 28 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.41 3.94 8.49 -40.82 -0.35 3.60 16 30 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 31 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 35 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.14 1.64 6.73 -52.49 -0.35 1.28 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -34.21 328.99 -8.35 -42.57 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.76 Total: -0.55 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -1.81 Total: -24.99 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.44 Total: -34.71 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.96 Total: -24.82 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 23.35 SS G_CDS: -0.59 Total: 22.76 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.21 -8.35 -42.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.467 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds