Wall clock time and date at job start Tue Mar 31 2020 07:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46884 * 293.67495 * 3 2 1 5 5 C 1.37095 * 119.99969 * 264.03037 * 4 3 2 6 6 H 1.07999 * 119.99778 * 195.97548 * 5 4 3 7 7 C 1.38944 * 120.00078 * 15.96636 * 5 4 3 8 8 N 1.31408 * 120.00072 * 16.93773 * 7 5 4 9 9 Si 1.86807 * 120.00076 * 196.92944 * 7 5 4 10 10 H 1.48501 * 109.46737 * 90.00444 * 9 7 5 11 11 H 1.48504 * 109.47121 * 210.00109 * 9 7 5 12 12 H 1.48490 * 109.47134 * 330.00799 * 9 7 5 13 13 C 1.34774 * 119.99783 * 84.03116 * 4 3 2 14 14 O 1.21298 * 119.99971 * 185.54768 * 13 4 3 15 15 C 1.50703 * 120.00201 * 5.54703 * 13 4 3 16 16 H 1.08996 * 109.70547 * 328.90185 * 15 13 4 17 17 O 1.43176 * 109.70801 * 208.31647 * 15 13 4 18 18 C 1.36108 * 116.70635 * 286.54015 * 17 15 13 19 19 C 1.38701 * 119.40085 * 162.74810 * 18 17 15 20 20 C 1.38194 * 120.07003 * 179.87139 * 19 18 17 21 21 C 1.38254 * 120.11157 * 359.95825 * 20 19 18 22 22 C 1.38193 * 120.11461 * 0.08439 * 21 20 19 23 23 C 1.38712 * 120.06526 * 359.97438 * 22 21 20 24 24 O 1.36099 * 119.39527 * 179.67190 * 23 22 21 25 25 C 1.43250 * 116.73538 * 162.95927 * 24 23 22 26 26 H 1.09006 * 109.67851 * 286.51022 * 25 24 23 27 27 C 1.53002 * 109.77947 * 165.86403 * 25 24 23 28 28 H 4.40642 * 5.51426 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.46829 * 173.67659 * 3 2 1 30 30 H 1.08997 * 109.46926 * 53.67557 * 3 2 1 31 31 H 0.97005 * 120.00036 * 179.97438 * 8 7 5 32 32 H 1.08005 * 119.96384 * 359.88309 * 19 18 17 33 33 H 1.08002 * 119.94417 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.94330 * 180.10793 * 21 20 19 35 35 H 1.07995 * 119.96874 * 180.02562 * 22 21 20 36 36 H 1.09001 * 109.46879 * 297.46053 * 27 25 24 37 37 H 1.08997 * 109.47015 * 57.45342 * 27 25 24 38 38 H 1.08992 * 109.47460 * 177.45773 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.5538 1.2650 5 6 3.4791 0.2849 2.2934 6 1 4.0720 -0.0855 3.1166 7 6 3.0657 1.6113 2.2764 8 7 2.0903 1.9853 1.4792 9 14 3.8964 2.8628 3.3869 10 1 5.0471 3.4717 2.6725 11 1 2.9232 3.9235 3.7521 12 1 4.3791 2.1884 4.6186 13 6 3.2453 -1.8882 1.4177 14 8 3.5529 -2.3519 2.4956 15 6 2.9870 -2.8044 0.2494 16 1 2.2417 -2.3588 -0.4093 17 8 2.5167 -4.0709 0.7237 18 6 3.4364 -4.8836 1.3120 19 6 3.0058 -5.9394 2.1018 20 6 3.9276 -6.7749 2.7036 21 6 5.2811 -6.5614 2.5195 22 6 5.7169 -5.5108 1.7345 23 6 4.7969 -4.6677 1.1287 24 8 5.2413 -3.6333 0.3640 25 6 4.2915 -3.0357 -0.5264 26 1 4.1064 -3.7036 -1.3678 27 6 4.8311 -1.6983 -1.0375 28 1 -1.0499 -0.0002 0.0001 29 1 3.0089 1.0222 -0.1132 30 1 3.0096 -0.6079 -0.8280 31 1 1.8014 2.9113 1.4676 32 1 1.9490 -6.1089 2.2465 33 1 3.5901 -7.5961 3.3185 34 1 5.9991 -7.2170 2.9896 35 1 6.7747 -5.3464 1.5920 36 1 4.9618 -1.0148 -0.1985 37 1 5.7908 -1.8578 -1.5290 38 1 4.1254 -1.2696 -1.7488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281529708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:19 Heat of formation + Delta-G solvation = 8.329116 kcal Electronic energy + Delta-G solvation = -25393.996871 eV Core-core repulsion = 21784.454331 eV Total energy + Delta-G solvation = -3609.542540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24995 -38.68528 -37.18497 -36.84757 -35.21485 -32.99340 -31.94069 -31.19561 -30.33436 -28.79126 -27.21631 -26.59058 -24.51647 -23.33050 -22.33929 -21.36480 -18.85898 -18.48879 -17.97048 -17.51772 -16.59511 -16.41328 -16.03128 -15.22980 -14.81073 -14.55833 -14.36548 -14.24897 -13.83751 -13.50839 -13.44457 -13.38928 -12.96003 -12.54854 -12.32388 -12.10156 -11.90862 -11.69683 -11.51166 -11.33662 -11.20976 -11.05732 -10.73581 -10.55417 -10.39083 -9.98045 -9.45658 -9.43098 -8.95045 -8.72121 -8.21754 -7.97979 -7.54474 -6.40993 -3.96379 1.64822 1.70230 3.05491 3.20011 3.23184 3.30185 3.33004 3.68410 3.78885 3.95566 4.08794 4.11809 4.51951 4.65543 4.94235 4.98443 5.03988 5.18985 5.24742 5.28650 5.40327 5.54423 5.58129 5.63300 5.73043 5.78283 5.88998 6.13710 6.20713 6.34132 6.43444 6.56787 6.69778 6.74683 6.95323 6.96095 7.27852 7.47177 7.77510 7.90153 8.31487 8.70125 9.01216 9.21372 9.73348 10.58335 Molecular weight = 301.11amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.005421 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.966905 B = 5164.278176 C = 5586.237270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.122 4.122 3 C 0.212 3.788 4 N -0.430 5.430 5 C -0.308 4.308 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.867 5.867 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.434 3.566 14 O -0.557 6.557 15 C 0.038 3.962 16 H 0.135 0.865 17 O -0.288 6.288 18 C 0.077 3.923 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.120 4.120 23 C 0.074 3.926 24 O -0.298 6.298 25 C 0.065 3.935 26 H 0.086 0.914 27 C -0.161 4.161 28 H 0.201 0.799 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.270 0.730 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -9.148 -6.805 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.124 4.124 3 C 0.090 3.910 4 N -0.150 5.150 5 C -0.435 4.435 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.506 5.506 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.221 3.779 14 O -0.439 6.439 15 C -0.023 4.023 16 H 0.152 0.848 17 O -0.201 6.201 18 C 0.032 3.968 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.139 4.139 23 C 0.028 3.972 24 O -0.213 6.213 25 C 0.008 3.992 26 H 0.103 0.897 27 C -0.218 4.218 28 H 0.218 0.782 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.141 -9.125 -6.323 11.537 hybrid contribution -0.289 1.091 0.508 1.237 sum 2.852 -8.034 -5.815 10.320 Atomic orbital electron populations 1.24352 0.95461 1.04871 1.02659 1.23248 0.94447 0.96718 0.97946 1.18864 0.84360 1.02040 0.85784 1.43697 1.55367 1.03422 1.12493 1.19743 1.30896 0.90013 1.02896 0.87715 1.25313 0.95328 0.98511 0.98181 1.70040 1.23665 1.18278 1.38574 0.85905 0.78797 0.79705 0.80255 1.20181 1.20955 1.19380 1.19982 0.85572 0.83139 0.89215 1.90587 1.51827 1.74515 1.26989 1.23319 0.98426 0.83959 0.96554 0.84761 1.86329 1.34605 1.26116 1.73095 1.18812 0.87380 0.93373 0.97239 1.20345 1.00454 0.95528 0.97216 1.20758 0.92752 0.99961 1.00728 1.20747 0.95734 0.98001 0.99819 1.20319 0.98762 0.94679 1.00139 1.18821 0.91559 0.90399 0.96387 1.86279 1.37534 1.45491 1.51961 1.23042 0.88383 0.96953 0.90815 0.89663 1.22179 1.02197 0.94462 1.02970 0.78218 0.85887 0.91463 0.91959 0.85373 0.85682 0.85695 0.85390 0.89309 0.90721 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.17 19.25 29.55 0.57 -4.60 16 2 C -0.12 -2.66 11.01 -37.12 -0.41 -3.07 16 3 C 0.21 4.45 3.94 -6.82 -0.03 4.42 16 4 N -0.43 -10.55 1.92 -117.93 -0.23 -10.78 16 5 C -0.31 -8.32 9.37 -14.94 -0.14 -8.46 16 6 H 0.11 3.02 7.38 -52.49 -0.39 2.63 16 7 C 0.03 0.77 5.01 -17.47 -0.09 0.69 16 8 N -0.87 -22.01 9.18 55.50 0.51 -21.50 16 9 Si 0.93 20.21 29.59 -169.99 -5.03 15.18 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 13 C 0.43 10.67 5.58 -10.99 -0.06 10.60 16 14 O -0.56 -15.89 14.67 -12.37 -0.18 -16.07 16 15 C 0.04 0.75 2.89 -27.61 -0.08 0.67 16 16 H 0.14 2.40 6.03 -51.93 -0.31 2.09 16 17 O -0.29 -5.99 10.09 -46.14 -0.47 -6.46 16 18 C 0.08 1.54 5.32 -39.14 -0.21 1.33 16 19 C -0.12 -2.00 9.96 -39.43 -0.39 -2.40 16 20 C -0.12 -1.79 10.04 -39.59 -0.40 -2.19 16 21 C -0.12 -1.78 10.04 -39.59 -0.40 -2.17 16 22 C -0.12 -1.98 9.96 -39.42 -0.39 -2.38 16 23 C 0.07 1.43 5.77 -39.13 -0.23 1.20 16 24 O -0.30 -5.78 9.71 -32.90 -0.32 -6.10 16 25 C 0.07 1.10 3.35 -26.46 -0.09 1.01 16 26 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 27 C -0.16 -2.34 8.04 37.16 0.30 -2.04 16 28 H 0.20 3.29 7.80 -54.10 -0.42 2.87 16 29 H 0.12 2.72 6.16 -51.93 -0.32 2.40 16 30 H 0.07 1.14 3.16 -51.93 -0.16 0.97 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.09 1.57 5.94 -51.93 -0.31 1.26 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.03 6.34 -51.93 -0.33 0.70 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -32.94 315.65 -6.91 -39.85 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -3.92 Total: 8.49 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.04 Total: -7.37 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.28 Total: -32.28 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.97 Total: -28.63 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.94 -6.91 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281529708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.176 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds