Wall clock time and date at job start Tue Mar 31 2020 07:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38834 * 119.66774 * 2 1 4 4 C 1.36628 * 120.53209 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.76327 * 359.97438 * 4 3 2 6 6 C 1.46482 * 134.03481 * 179.97438 * 5 4 3 7 7 C 1.50695 * 126.50522 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47058 * 84.99511 * 7 6 5 9 9 C 1.50700 * 109.47103 * 180.02562 * 8 7 6 10 10 O 1.20823 * 120.00304 * 0.02562 * 9 8 7 11 11 O 1.34231 * 120.00339 * 180.02562 * 9 8 7 12 12 C 1.45192 * 117.00400 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47099 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47174 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99707 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00051 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00146 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47201 * 90.00063 * 18 16 14 20 20 H 1.48504 * 109.47518 * 210.00068 * 18 16 14 21 21 H 1.48497 * 109.47319 * 330.00113 * 18 16 14 22 22 C 1.34241 * 106.99890 * 180.02562 * 6 5 4 23 23 N 1.36833 * 109.93022 * 0.02562 * 22 6 5 24 24 H 0.97000 * 125.06652 * 179.97438 * 23 22 6 25 25 C 1.37688 * 109.87243 * 0.02562 * 23 22 6 26 26 C 1.37747 * 119.66772 * 180.16408 * 2 1 3 27 27 H 1.09002 * 109.46470 * 90.00378 * 1 2 3 28 28 H 1.08999 * 109.47076 * 210.00108 * 1 2 3 29 29 H 1.08992 * 109.47445 * 330.00428 * 1 2 3 30 30 H 1.07999 * 119.73036 * 359.96944 * 3 2 1 31 31 H 1.07997 * 120.11684 * 179.97438 * 4 3 2 32 32 H 1.08991 * 109.47667 * 204.99791 * 7 6 5 33 33 H 1.09003 * 109.47274 * 325.00323 * 7 6 5 34 34 H 1.09004 * 109.47560 * 300.00204 * 8 7 6 35 35 H 1.09002 * 109.47136 * 60.00475 * 8 7 6 36 36 H 1.09008 * 109.47184 * 299.99586 * 12 11 9 37 37 H 1.08997 * 109.47531 * 59.99678 * 12 11 9 38 38 H 1.08999 * 109.47045 * 299.99333 * 13 12 11 39 39 H 1.08991 * 109.47639 * 59.99703 * 13 12 11 40 40 H 0.97001 * 119.99839 * 180.02562 * 17 16 14 41 41 H 1.08002 * 125.03847 * 180.02562 * 22 6 5 42 42 H 1.08001 * 120.11380 * 359.83731 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2717 0.0254 0.0016 6 6 5.6966 -0.3142 0.0019 7 6 6.8495 0.6562 0.0016 8 6 7.1584 1.0816 1.4385 9 6 8.3110 2.0525 1.4381 10 8 8.8316 2.3719 0.3956 11 8 8.7593 2.5625 2.5960 12 6 9.8721 3.4921 2.5199 13 6 10.2408 3.9626 3.9283 14 6 11.3962 4.9270 3.8494 15 1 11.8249 5.1786 2.8906 16 6 11.9058 5.4879 5.0011 17 7 12.9145 6.3290 4.9323 18 14 11.1638 5.0531 6.6593 19 1 11.8654 3.8709 7.2210 20 1 11.3137 6.2039 7.5859 21 1 9.7224 4.7388 6.4896 22 6 5.7807 -1.6540 0.0026 23 7 4.5260 -2.2001 0.0021 24 1 4.3319 -3.1505 0.0020 25 6 3.5801 -1.1996 0.0005 26 6 2.1888 -1.1969 -0.0034 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5137 30 1 1.6444 2.1359 -0.0005 31 1 4.0881 2.1692 0.0001 32 1 7.7273 0.1775 -0.4323 33 1 6.5854 1.5340 -0.5882 34 1 6.2806 1.5604 1.8725 35 1 7.4225 0.2039 2.0284 36 1 10.7302 2.9953 2.0670 37 1 9.5872 4.3510 1.9124 38 1 9.3829 4.4593 4.3816 39 1 10.5258 3.1036 4.5355 40 1 13.2733 6.7234 5.7426 41 1 6.7021 -2.2174 0.0033 42 1 1.6453 -2.1301 -0.0034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745759708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:44 Heat of formation + Delta-G solvation = -54.714586 kcal Electronic energy + Delta-G solvation = -22633.392391 eV Core-core repulsion = 19156.949165 eV Total energy + Delta-G solvation = -3476.443225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53596 -39.95651 -37.64674 -36.31875 -34.31377 -33.28284 -32.26814 -30.83844 -30.32218 -29.31541 -26.56417 -25.63273 -24.18840 -23.01271 -21.17250 -20.77795 -20.38061 -19.45050 -18.05820 -17.34859 -16.61843 -16.50497 -16.16865 -15.73219 -15.40541 -14.78605 -14.56652 -14.30460 -14.19952 -13.97381 -13.69004 -13.27047 -13.10683 -12.68396 -12.54051 -12.50129 -12.39041 -12.04578 -11.88790 -11.48854 -11.45073 -11.23776 -11.17382 -10.86907 -10.66998 -10.52238 -9.96370 -9.90568 -9.67492 -9.65990 -9.32630 -8.60865 -8.37221 -7.84235 -6.11452 -4.12440 0.88454 1.39559 2.38148 2.58998 2.84898 3.24875 3.29112 3.36483 3.41336 3.66059 4.40053 4.44976 4.54978 4.65120 4.78549 4.93581 4.98795 5.02143 5.09192 5.21353 5.22146 5.29477 5.34001 5.42501 5.52323 5.55504 5.61618 5.69731 5.81974 5.99642 6.01065 6.02393 6.06876 6.32062 6.38564 6.48819 6.50876 6.56848 6.86170 6.93961 7.23080 7.25548 7.26157 7.64476 8.20854 8.41527 8.90391 9.48262 11.01102 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.002311 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.432530 B =12112.570096 C =12609.082553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.064 4.064 5 C -0.105 4.105 6 C -0.165 4.165 7 C -0.032 4.032 8 C -0.109 4.109 9 C 0.454 3.546 10 O -0.517 6.517 11 O -0.363 6.363 12 C 0.082 3.918 13 C -0.010 4.010 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C 0.053 3.947 23 N -0.597 5.597 24 H 0.415 0.585 25 C 0.099 3.901 26 C -0.135 4.135 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.171 0.829 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.273 -19.044 -10.338 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.068 4.068 3 C -0.165 4.165 4 C -0.083 4.083 5 C -0.110 4.110 6 C -0.172 4.172 7 C -0.070 4.070 8 C -0.146 4.146 9 C 0.297 3.703 10 O -0.407 6.407 11 O -0.280 6.280 12 C 0.009 3.991 13 C -0.047 4.047 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.708 3.292 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.073 4.073 23 N -0.199 5.199 24 H 0.251 0.749 25 C -0.008 4.008 26 C -0.156 4.156 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.188 0.812 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.949 -18.931 -10.512 32.287 hybrid contribution -0.148 -0.574 0.854 1.039 sum -24.097 -19.505 -9.658 32.471 Atomic orbital electron populations 1.20768 0.91113 1.02722 1.02228 1.19547 0.95691 0.92295 0.99309 1.20537 0.93934 0.97363 1.04698 1.20330 0.93623 0.96624 0.97710 1.19091 0.92591 0.92512 1.06785 1.20193 0.92395 0.93032 1.11562 1.19685 0.94877 0.97807 0.94651 1.21375 0.95540 0.98103 0.99628 1.23651 0.84023 0.80348 0.82232 1.90638 1.57784 1.58872 1.33368 1.86489 1.49869 1.57357 1.34263 1.23354 0.84599 0.89559 1.01552 1.19624 0.97561 0.96797 0.90754 1.20853 1.14675 1.25274 0.95664 0.90659 1.24945 0.94527 0.94395 0.99228 1.69900 1.24705 1.29962 1.28975 0.86743 0.80570 0.78178 0.83670 1.20089 1.21191 1.18734 1.21664 0.87661 0.93713 1.04275 1.41711 1.04664 1.07928 1.65623 0.74868 1.18216 0.90700 0.88042 1.03847 1.19814 0.89848 0.98088 1.07812 0.91252 0.91773 0.91379 0.86032 0.85835 0.90227 0.90187 0.87953 0.88028 0.91788 0.91738 0.95399 0.95852 0.92462 0.81177 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.99 36.01 0.36 -0.29 16 2 C -0.07 -0.58 5.88 -104.58 -0.61 -1.19 16 3 C -0.15 -1.35 9.62 -39.94 -0.38 -1.73 16 4 C -0.06 -0.67 10.05 -39.64 -0.40 -1.07 16 5 C -0.11 -1.16 6.35 -105.14 -0.67 -1.83 16 6 C -0.16 -1.68 5.57 -102.72 -0.57 -2.25 16 7 C -0.03 -0.35 5.04 -27.88 -0.14 -0.49 16 8 C -0.11 -1.27 5.79 -27.88 -0.16 -1.43 16 9 C 0.45 7.54 7.96 36.01 0.29 7.83 16 10 O -0.52 -9.91 15.73 -18.75 -0.29 -10.20 16 11 O -0.36 -6.97 10.22 -39.26 -0.40 -7.37 16 12 C 0.08 1.78 5.40 37.16 0.20 1.98 16 13 C -0.01 -0.24 4.42 -27.88 -0.12 -0.37 16 14 C -0.53 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 18 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 C 0.05 0.42 11.73 -16.73 -0.20 0.23 16 23 N -0.60 -4.47 6.07 -10.65 -0.06 -4.54 16 24 H 0.41 1.81 8.96 -40.82 -0.37 1.44 16 25 C 0.10 0.97 7.28 -83.98 -0.61 0.36 16 26 C -0.13 -1.17 9.71 -39.43 -0.38 -1.55 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.06 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.40 8.13 -51.92 -0.42 0.97 16 37 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 38 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 39 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -34.02 359.43 -9.28 -43.30 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.20 Total: -1.48 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.84 Total: -15.29 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.71 Total: -31.29 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.70 Total: -17.57 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.02 -9.28 -43.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745759708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.411 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds