Wall clock time and date at job start Tue Mar 31 2020 08:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47191 * 2 1 4 4 H 1.08998 * 109.46834 * 305.00292 * 3 2 1 5 5 C 1.50706 * 109.46856 * 185.00305 * 3 2 1 6 6 H 1.07999 * 119.99514 * 239.99941 * 5 3 2 7 7 C 1.37875 * 119.99961 * 59.99932 * 5 3 2 8 8 N 1.31517 * 120.00249 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99731 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47358 * 59.99933 * 9 7 5 11 11 H 1.48503 * 109.46908 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47169 * 299.99775 * 9 7 5 13 13 N 1.46499 * 109.46877 * 65.00230 * 3 2 1 14 14 C 1.34771 * 119.99903 * 274.99523 * 13 3 2 15 15 O 1.21654 * 120.00315 * 0.02562 * 14 13 3 16 16 C 1.46977 * 119.99868 * 180.02562 * 14 13 3 17 17 C 1.35808 * 125.13340 * 180.02562 * 16 14 13 18 18 C 1.46244 * 106.08398 * 179.97438 * 17 16 14 19 19 C 1.39697 * 134.19177 * 180.02562 * 18 17 16 20 20 C 1.36626 * 119.70967 * 179.97438 * 19 18 17 21 21 C 1.50706 * 119.77500 * 179.97438 * 20 19 18 22 22 C 1.38827 * 120.44531 * 0.25434 * 20 19 18 23 23 C 1.50700 * 119.63068 * 179.72563 * 22 20 19 24 24 C 1.37799 * 120.74288 * 359.49888 * 22 20 19 25 25 C 1.39027 * 119.85409 * 0.47899 * 24 22 20 26 26 O 1.34713 * 133.24340 * 179.77878 * 25 24 22 27 27 H 1.09003 * 109.46700 * 299.99889 * 1 2 3 28 28 H 1.09000 * 109.47352 * 59.99489 * 1 2 3 29 29 H 1.08994 * 109.47286 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46700 * 240.00111 * 2 1 3 31 31 H 1.09000 * 109.47352 * 120.00511 * 2 1 3 32 32 H 0.97000 * 120.00005 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99606 * 95.00149 * 13 3 2 34 34 H 1.08008 * 126.95999 * 359.96187 * 17 16 14 35 35 H 1.08002 * 120.14561 * 359.95324 * 19 18 17 36 36 H 1.08999 * 109.47015 * 90.00310 * 21 20 19 37 37 H 1.09000 * 109.46646 * 209.99462 * 21 20 19 38 38 H 1.09000 * 109.47248 * 330.00180 * 21 20 19 39 39 H 1.08991 * 109.47228 * 89.99776 * 23 22 20 40 40 H 1.09006 * 109.47244 * 210.00072 * 23 22 20 41 41 H 1.08998 * 109.47106 * 329.99654 * 23 22 20 42 42 H 1.08001 * 120.07618 * 180.26164 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3819 10 1 6.5975 0.1472 -0.2351 11 1 6.3976 0.2176 -2.6511 12 1 6.4995 2.2814 -1.3824 13 7 1.6525 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3419 2.6319 0.4316 16 6 0.0467 3.3219 2.6227 17 6 -1.1489 3.9238 2.8524 18 6 -1.0896 4.4333 4.2219 19 6 -1.9797 5.1335 5.0398 20 6 -1.6091 5.4708 6.3109 21 6 -2.5680 6.2267 7.1943 22 6 -0.3532 5.1269 6.7921 23 6 0.0388 5.5136 8.1949 24 6 0.5375 4.4319 6.0031 25 6 0.1829 4.0774 4.7064 26 8 0.8239 3.4183 3.7218 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8291 -0.0604 -2.9504 33 1 2.2721 2.1230 1.9977 34 1 -1.9760 4.0091 2.1631 35 1 -2.9563 5.4074 4.6689 36 1 -3.1803 5.5199 7.7543 37 1 -2.0064 6.8511 7.8892 38 1 -3.2107 6.8557 6.5783 39 1 -0.2445 4.7178 8.8837 40 1 1.1168 5.6679 8.2416 41 1 -0.4725 6.4349 8.4741 42 1 1.5103 4.1663 6.3899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183942276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:50 Heat of formation + Delta-G solvation = -23.887254 kcal Electronic energy + Delta-G solvation = -23793.498905 eV Core-core repulsion = 20318.392453 eV Total energy + Delta-G solvation = -3475.106452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.41677 -39.17991 -38.55258 -35.22766 -33.43617 -32.58087 -32.27161 -31.25530 -30.71110 -27.52864 -27.25683 -26.39396 -23.55853 -22.68464 -21.87149 -21.36059 -20.13663 -19.45061 -18.14381 -17.17016 -16.29748 -16.18933 -15.49501 -15.28639 -15.10319 -14.55504 -14.42188 -14.26777 -14.16179 -13.47818 -13.10181 -12.98891 -12.97943 -12.70051 -12.56760 -12.30824 -12.13304 -11.63158 -11.59584 -11.53834 -11.28095 -11.05917 -11.02126 -10.85191 -10.38741 -10.24587 -10.05339 -9.71233 -9.46642 -9.11237 -8.54286 -8.51120 -8.21951 -7.91000 -6.15374 -4.25112 0.62217 1.21923 1.97507 2.61134 3.25183 3.30254 3.31706 3.49659 3.70629 3.82577 4.32158 4.48917 4.55846 4.68077 4.81083 4.89412 5.02738 5.16148 5.23212 5.28600 5.35979 5.42728 5.46167 5.54468 5.59694 5.74325 5.85800 6.07895 6.14169 6.34593 6.35667 6.38064 6.41642 6.52776 6.60642 6.98925 7.02359 7.16311 7.24702 7.32790 7.57123 7.67768 7.83690 8.11662 8.51021 8.67449 8.92188 9.41581 10.90051 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.003154 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.421172 B = 8874.621579 C = 9698.563668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.688 5.688 14 C 0.580 3.420 15 O -0.522 6.522 16 C -0.004 4.004 17 C -0.136 4.136 18 C -0.139 4.139 19 C -0.061 4.061 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.058 4.058 23 C -0.115 4.115 24 C -0.108 4.108 25 C 0.064 3.936 26 O -0.183 6.183 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.395 0.605 34 H 0.168 0.832 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 9.230 18.714 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.335 5.335 14 C 0.362 3.638 15 O -0.401 6.401 16 C -0.054 4.054 17 C -0.157 4.157 18 C -0.140 4.140 19 C -0.079 4.079 20 C -0.109 4.109 21 C -0.169 4.169 22 C -0.059 4.059 23 C -0.172 4.172 24 C -0.126 4.126 25 C 0.016 3.984 26 O -0.084 6.084 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.229 0.771 34 H 0.185 0.815 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.954 8.963 17.829 21.872 hybrid contribution 1.196 -0.070 0.131 1.205 sum -7.758 8.893 17.960 21.490 Atomic orbital electron populations 1.21861 0.98304 0.98354 1.01177 1.21956 0.92655 0.99509 1.02601 1.18941 0.94610 0.89360 0.80363 0.92852 1.21173 0.90441 1.39388 1.06507 0.91969 1.24873 0.98748 0.94660 0.95276 1.69878 1.35313 1.37418 1.09305 0.86483 0.84644 0.78377 0.77476 1.20101 1.21084 1.20131 1.46546 1.13772 1.54047 1.19099 1.16734 0.83770 0.79510 0.83737 1.90858 1.51840 1.60401 1.37011 1.22711 0.91421 1.03607 0.87638 1.22651 0.98159 1.00201 0.94698 1.19910 0.95412 1.03835 0.94803 1.20159 0.98579 0.96754 0.92457 1.19322 0.95174 1.01495 0.94887 1.20819 0.97832 0.99360 0.98851 1.19483 0.92958 0.97245 0.96169 1.20872 1.02183 1.01970 0.92155 1.19765 1.01194 1.02212 0.89432 1.19709 0.91498 0.96698 0.90534 1.84067 1.41529 1.62912 1.19883 0.94452 0.92975 0.95544 0.87968 0.94797 0.92407 0.77137 0.81474 0.85359 0.91211 0.91095 0.91581 0.90788 0.91272 0.90762 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.47 11.30 55.43 0.63 -23.84 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.69 -14.86 5.02 -56.15 -0.28 -15.14 16 14 C 0.58 12.10 6.36 -12.72 -0.08 12.02 16 15 O -0.52 -12.12 13.96 5.23 0.07 -12.05 16 16 C 0.00 -0.06 7.07 -36.91 -0.26 -0.32 16 17 C -0.14 -2.16 10.80 -37.24 -0.40 -2.56 16 18 C -0.14 -1.99 6.38 -105.20 -0.67 -2.66 16 19 C -0.06 -0.70 9.68 -39.62 -0.38 -1.09 16 20 C -0.11 -1.08 5.85 -104.98 -0.61 -1.69 16 21 C -0.11 -0.74 9.59 36.01 0.35 -0.40 16 22 C -0.06 -0.58 5.88 -104.56 -0.61 -1.20 16 23 C -0.12 -0.76 9.58 36.01 0.34 -0.42 16 24 C -0.11 -1.28 9.70 -39.45 -0.38 -1.66 16 25 C 0.06 0.95 7.41 -38.35 -0.28 0.67 16 26 O -0.18 -3.08 10.28 2.77 0.03 -3.05 16 27 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.40 7.78 8.25 -40.82 -0.34 7.44 16 34 H 0.17 2.40 8.06 -52.48 -0.42 1.98 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.38 5.89 -51.93 -0.31 0.07 16 38 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.07 0.39 5.90 -51.93 -0.31 0.09 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -29.71 345.92 -8.44 -38.15 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.69 Total: 6.70 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.38 Total: -11.53 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.34 Total: -38.98 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.10 Total: -15.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.71 -8.44 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183942276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.260 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds