Wall clock time and date at job start Tue Mar 31 2020 08:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47191 * 2 1 4 4 H 1.08998 * 109.46834 * 305.00292 * 3 2 1 5 5 C 1.50706 * 109.46856 * 185.00305 * 3 2 1 6 6 H 1.07999 * 119.99514 * 239.99941 * 5 3 2 7 7 C 1.37875 * 119.99961 * 59.99932 * 5 3 2 8 8 N 1.31517 * 120.00249 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99731 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47358 * 59.99933 * 9 7 5 11 11 H 1.48503 * 109.46908 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47169 * 299.99775 * 9 7 5 13 13 N 1.46499 * 109.46877 * 65.00230 * 3 2 1 14 14 C 1.34771 * 119.99903 * 274.99523 * 13 3 2 15 15 O 1.21654 * 120.00315 * 0.02562 * 14 13 3 16 16 C 1.46977 * 119.99868 * 180.02562 * 14 13 3 17 17 C 1.35808 * 125.13340 * 180.02562 * 16 14 13 18 18 C 1.46244 * 106.08398 * 179.97438 * 17 16 14 19 19 C 1.39697 * 134.19177 * 180.02562 * 18 17 16 20 20 C 1.36626 * 119.70967 * 179.97438 * 19 18 17 21 21 C 1.50706 * 119.77500 * 179.97438 * 20 19 18 22 22 C 1.38827 * 120.44531 * 0.25434 * 20 19 18 23 23 C 1.50700 * 119.63068 * 179.72563 * 22 20 19 24 24 C 1.37799 * 120.74288 * 359.49888 * 22 20 19 25 25 C 1.39027 * 119.85409 * 0.47899 * 24 22 20 26 26 O 1.34713 * 133.24340 * 179.77878 * 25 24 22 27 27 H 1.09003 * 109.46700 * 299.99889 * 1 2 3 28 28 H 1.09000 * 109.47352 * 59.99489 * 1 2 3 29 29 H 1.08994 * 109.47286 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46700 * 240.00111 * 2 1 3 31 31 H 1.09000 * 109.47352 * 120.00511 * 2 1 3 32 32 H 0.97000 * 120.00005 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99606 * 95.00149 * 13 3 2 34 34 H 1.08008 * 126.95999 * 359.96187 * 17 16 14 35 35 H 1.08002 * 120.14561 * 359.95324 * 19 18 17 36 36 H 1.08999 * 109.47015 * 90.00310 * 21 20 19 37 37 H 1.09000 * 109.46646 * 209.99462 * 21 20 19 38 38 H 1.09000 * 109.47248 * 330.00180 * 21 20 19 39 39 H 1.08991 * 109.47228 * 89.99776 * 23 22 20 40 40 H 1.09006 * 109.47244 * 210.00072 * 23 22 20 41 41 H 1.08998 * 109.47106 * 329.99654 * 23 22 20 42 42 H 1.08001 * 120.07618 * 180.26164 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3819 10 1 6.5975 0.1472 -0.2351 11 1 6.3976 0.2176 -2.6511 12 1 6.4995 2.2814 -1.3824 13 7 1.6525 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3419 2.6319 0.4316 16 6 0.0467 3.3219 2.6227 17 6 -1.1489 3.9238 2.8524 18 6 -1.0896 4.4333 4.2219 19 6 -1.9797 5.1335 5.0398 20 6 -1.6091 5.4708 6.3109 21 6 -2.5680 6.2267 7.1943 22 6 -0.3532 5.1269 6.7921 23 6 0.0388 5.5136 8.1949 24 6 0.5375 4.4319 6.0031 25 6 0.1829 4.0774 4.7064 26 8 0.8239 3.4183 3.7218 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8291 -0.0604 -2.9504 33 1 2.2721 2.1230 1.9977 34 1 -1.9760 4.0091 2.1631 35 1 -2.9563 5.4074 4.6689 36 1 -3.1803 5.5199 7.7543 37 1 -2.0064 6.8511 7.8892 38 1 -3.2107 6.8557 6.5783 39 1 -0.2445 4.7178 8.8837 40 1 1.1168 5.6679 8.2416 41 1 -0.4725 6.4349 8.4741 42 1 1.5103 4.1663 6.3899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183942276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:49 Heat of formation + Delta-G solvation = -40.645702 kcal Electronic energy + Delta-G solvation = -23794.225606 eV Core-core repulsion = 20318.392453 eV Total energy + Delta-G solvation = -3475.833152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56667 -40.73847 -39.58939 -37.11084 -34.55996 -34.27641 -33.33265 -32.84166 -31.93715 -29.26120 -28.00772 -27.61514 -25.23883 -24.02898 -23.01061 -22.45206 -21.73679 -21.14930 -19.64786 -18.28737 -17.95249 -17.54193 -17.28266 -16.40830 -16.23347 -16.15102 -16.00185 -15.14847 -15.08910 -14.91991 -14.64208 -14.16593 -14.05824 -13.85144 -13.55763 -13.54009 -13.27675 -13.20299 -12.98488 -12.92457 -12.68479 -12.42957 -12.23668 -12.18614 -12.12327 -11.89797 -11.65561 -11.23651 -11.15857 -11.12438 -10.57308 -9.86095 -9.42335 -9.19390 -8.19504 -6.37266 -0.48672 0.28636 0.79009 1.39960 1.44227 1.45696 1.53655 2.12210 2.26492 2.47550 2.59474 3.09816 3.41511 3.58918 3.82508 3.93542 4.02368 4.11282 4.25987 4.44912 4.45671 4.52585 4.67748 4.70179 4.74027 4.78751 4.82101 4.97641 4.99636 5.03785 5.16033 5.21645 5.22673 5.29110 5.32372 5.36858 5.39989 5.53670 5.58608 5.63798 5.73880 5.83389 6.04403 6.09745 6.65940 6.74849 7.15406 7.35964 8.85896 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.003154 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.421172 B = 8874.621579 C = 9698.563668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.009 0.991 5 C -0.555 4.555 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.690 5.690 14 C 0.583 3.417 15 O -0.554 6.554 16 C -0.039 4.039 17 C -0.116 4.116 18 C -0.162 4.162 19 C -0.065 4.065 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.045 4.045 23 C -0.116 4.116 24 C -0.124 4.124 25 C 0.043 3.957 26 O -0.196 6.196 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.267 0.733 33 H 0.404 0.596 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 10.582 22.101 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.027 0.973 5 C -0.593 4.593 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.796 3.204 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.337 5.337 14 C 0.369 3.631 15 O -0.436 6.436 16 C -0.089 4.089 17 C -0.137 4.137 18 C -0.163 4.163 19 C -0.083 4.083 20 C -0.106 4.106 21 C -0.168 4.168 22 C -0.045 4.045 23 C -0.172 4.172 24 C -0.143 4.143 25 C -0.005 4.005 26 O -0.098 6.098 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.272 10.328 21.252 25.383 hybrid contribution 1.173 -0.355 -0.722 1.422 sum -8.100 9.973 20.530 24.219 Atomic orbital electron populations 1.21706 0.96823 0.99574 1.00277 1.21807 0.93916 0.98715 1.01613 1.18565 0.94087 0.89468 0.80477 0.97318 1.21496 0.91163 1.39603 1.06997 0.91363 1.25736 1.03432 0.94122 0.94816 1.70020 1.37197 1.37964 1.09756 0.85414 0.78897 0.78465 0.77673 1.19010 1.20799 1.19742 1.46309 1.14577 1.54503 1.18265 1.16974 0.82891 0.78713 0.84568 1.90821 1.52523 1.61568 1.38640 1.21983 0.92717 1.06638 0.87546 1.22918 0.97234 0.97909 0.95627 1.20062 0.96273 1.05577 0.94349 1.20514 0.99014 0.95975 0.92825 1.19817 0.95724 1.00434 0.94622 1.20921 0.97500 0.99590 0.98754 1.20021 0.92357 0.94788 0.97377 1.21006 1.03097 1.03292 0.89815 1.20141 1.02602 1.02971 0.88546 1.20246 0.91958 0.97129 0.91182 1.83987 1.41853 1.63941 1.20063 0.94325 0.94849 0.93113 0.90304 0.94152 0.92346 0.76116 0.80601 0.83216 0.89889 0.89278 0.90624 0.89292 0.90439 0.88768 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.51 71.98 0.61 -5.18 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.59 2.24 44.25 0.10 14.69 16 4 H 0.01 0.55 7.58 -2.39 -0.02 0.53 16 5 C -0.55 -30.09 8.73 25.60 0.22 -29.87 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -52.09 11.30 21.45 0.24 -51.85 16 9 Si 0.97 42.51 29.54 68.60 2.03 44.53 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 N -0.69 -31.23 5.02 -449.80 -2.26 -33.49 16 14 C 0.58 25.61 6.36 86.53 0.55 26.16 16 15 O -0.55 -27.16 13.96 -4.20 -0.06 -27.22 16 16 C -0.04 -1.46 7.07 24.00 0.17 -1.29 16 17 C -0.12 -3.74 10.80 23.79 0.26 -3.49 16 18 C -0.16 -4.55 6.38 -20.24 -0.13 -4.68 16 19 C -0.07 -1.35 9.68 22.25 0.22 -1.14 16 20 C -0.11 -1.74 5.85 -20.10 -0.12 -1.86 16 21 C -0.11 -0.97 9.59 71.24 0.68 -0.28 16 22 C -0.05 -0.76 5.88 -19.83 -0.12 -0.88 16 23 C -0.12 -1.03 9.58 71.24 0.68 -0.35 16 24 C -0.12 -2.77 9.70 22.36 0.22 -2.55 16 25 C 0.04 1.26 7.41 23.07 0.17 1.43 16 26 O -0.20 -6.82 10.28 -13.00 -0.13 -6.96 16 27 H 0.04 1.73 5.64 -2.39 -0.01 1.72 16 28 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 4.36 5.95 -2.39 -0.01 4.34 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.40 16.62 8.25 -92.71 -0.77 15.85 16 34 H 0.18 5.13 8.06 -2.91 -0.02 5.11 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.48 5.89 -2.39 -0.01 0.47 16 38 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.61 8.08 -2.38 -0.02 0.59 16 41 H 0.09 0.50 5.90 -2.39 -0.01 0.49 16 42 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -67.24 345.92 4.23 -63.00 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.28 Total: 25.70 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 4.13 Total: -13.71 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.01 Total: -85.33 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.19 Total: -34.18 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -67.24 4.23 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183942276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.355 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds