Wall clock time and date at job start Tue Mar 31 2020 07:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50691 * 120.00477 * 2 1 4 4 C 1.53005 * 109.47120 * 123.41719 * 3 2 1 5 5 H 1.08993 * 109.47069 * 305.67137 * 4 3 2 6 6 C 1.50702 * 109.47163 * 65.67223 * 4 3 2 7 7 O 1.21275 * 119.99779 * 34.20305 * 6 4 3 8 8 N 1.34777 * 119.99810 * 214.20713 * 6 4 3 9 9 C 1.47582 * 134.49243 * 175.05668 * 8 6 4 10 10 C 1.53942 * 86.11845 * 155.35527 * 9 8 6 11 11 O 1.42901 * 113.74307 * 269.15470 * 10 9 8 12 12 C 1.50698 * 113.73890 * 137.95105 * 10 9 8 13 13 H 1.07994 * 120.00716 * 1.92544 * 12 10 9 14 14 C 1.37888 * 119.99649 * 181.92383 * 12 10 9 15 15 N 1.31512 * 119.99793 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99851 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46960 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.46947 * 300.00256 * 16 14 12 19 19 H 1.48499 * 109.47407 * 59.99873 * 16 14 12 20 20 C 1.47811 * 134.45899 * 354.91973 * 8 6 4 21 21 C 1.50701 * 109.47051 * 185.67252 * 4 3 2 22 22 C 1.38236 * 119.99990 * 299.72513 * 21 4 3 23 23 C 1.38233 * 120.00215 * 179.78974 * 22 21 4 24 24 C 1.38236 * 119.99560 * 0.44288 * 23 22 21 25 25 C 1.38233 * 120.00304 * 359.81086 * 24 23 22 26 26 C 1.38229 * 119.99963 * 359.97438 * 25 24 23 27 27 H 1.07992 * 120.00604 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.98972 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99587 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47555 * 3.41966 * 3 2 1 31 31 H 1.09004 * 109.47373 * 243.41132 * 3 2 1 32 32 H 1.09006 * 113.76961 * 41.05306 * 9 8 6 33 33 H 1.09000 * 113.87069 * 269.67398 * 9 8 6 34 34 H 0.96696 * 114.00263 * 178.07350 * 11 10 9 35 35 H 0.97004 * 119.99467 * 179.97438 * 15 14 12 36 36 H 1.08994 * 113.76821 * 90.37797 * 20 8 6 37 37 H 1.09005 * 113.83399 * 318.92022 * 20 8 6 38 38 H 1.07999 * 120.00084 * 359.97438 * 22 21 4 39 39 H 1.07994 * 120.00503 * 180.27301 * 23 22 21 40 40 H 1.08006 * 120.00108 * 179.83136 * 24 23 22 41 41 H 1.08001 * 120.00362 * 180.02562 * 25 24 23 42 42 H 1.08007 * 120.00300 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0066 1.3493 1.2041 5 1 2.4399 1.1641 2.1164 6 6 4.0691 0.2919 1.0492 7 8 4.4892 0.0113 -0.0533 8 7 4.5524 -0.3420 2.1360 9 6 5.4957 -1.4569 2.3490 10 6 5.7402 -0.8462 3.7408 11 8 6.8145 0.0954 3.7753 12 6 5.8183 -1.8675 4.8461 13 1 5.7365 -2.9195 4.6162 14 6 5.9943 -1.4588 6.1512 15 7 6.0935 -0.1777 6.4313 16 14 6.0919 -2.7247 7.5213 17 1 6.2813 -2.0331 8.8217 18 1 4.8332 -3.5119 7.5585 19 1 7.2381 -3.6356 7.2730 20 6 4.3519 -0.1975 3.5933 21 6 3.6565 2.7067 1.2833 22 6 4.4370 3.1615 0.2369 23 6 5.0296 4.4083 0.3077 24 6 4.8492 5.1966 1.4289 25 6 4.0731 4.7397 2.4775 26 6 3.4769 3.4947 2.4048 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5398 0.9354 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3570 2.1326 0.0613 31 1 2.6436 1.3896 -0.9190 32 1 6.3679 -1.4252 1.6959 33 1 5.0206 -2.4375 2.3766 34 1 6.9524 0.5032 4.6412 35 1 6.2169 0.1099 7.3495 36 1 3.5383 -0.8065 3.9873 37 1 4.3125 0.8378 3.9320 38 1 4.5813 2.5439 -0.6372 39 1 5.6357 4.7655 -0.5116 40 1 5.3144 6.1697 1.4855 41 1 3.9318 5.3557 3.3533 42 1 2.8708 3.1374 3.2243 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193972093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:58 Heat of formation + Delta-G solvation = -11.542262 kcal Electronic energy + Delta-G solvation = -24771.638510 eV Core-core repulsion = 21297.067377 eV Total energy + Delta-G solvation = -3474.571133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09543 -38.80029 -37.45038 -35.21582 -33.91666 -32.45762 -32.21466 -30.73787 -29.00550 -28.21654 -25.63733 -25.24586 -23.91766 -22.43910 -21.47259 -20.07199 -19.52848 -18.08079 -17.40366 -16.74868 -16.48788 -15.51286 -15.26527 -15.15039 -14.94828 -14.41399 -14.39774 -14.11994 -13.63433 -13.21687 -13.05471 -12.88825 -12.62767 -12.49884 -12.17643 -11.94614 -11.86648 -11.55966 -11.42044 -11.23806 -11.05486 -11.03466 -10.88355 -10.63254 -10.53948 -10.28745 -9.62976 -9.32253 -9.22867 -8.77215 -8.74354 -8.53504 -8.35402 -7.80432 -6.38809 -4.49370 1.46110 1.57817 2.33195 3.15795 3.19538 3.21845 3.24530 3.55368 3.96927 4.18589 4.72478 4.82426 4.89354 5.03605 5.11616 5.20085 5.23042 5.32078 5.32956 5.49868 5.60594 5.67324 5.71470 5.81126 5.97585 6.01756 6.10491 6.12045 6.18881 6.22441 6.38975 6.52232 6.60454 6.62778 6.65597 6.68561 6.69202 6.75538 6.85587 7.10363 7.15229 7.62884 7.82753 8.50238 8.53483 8.77419 9.21779 9.44010 10.67676 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.004899 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.242069 B = 5714.319579 C = 6758.276329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.073 4.073 4 C -0.058 4.058 5 H 0.093 0.907 6 C 0.540 3.460 7 O -0.562 6.562 8 N -0.629 5.629 9 C 0.110 3.890 10 C 0.241 3.759 11 O -0.571 6.571 12 C -0.538 4.538 13 H 0.070 0.930 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.907 3.093 17 H -0.285 1.285 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.078 3.922 21 C -0.071 4.071 22 C -0.103 4.103 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.106 4.106 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.391 0.609 35 H 0.273 0.727 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.970 7.200 -6.458 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.161 4.161 3 C -0.110 4.110 4 C -0.079 4.079 5 H 0.111 0.889 6 C 0.329 3.671 7 O -0.442 6.442 8 N -0.362 5.362 9 C -0.012 4.012 10 C 0.199 3.801 11 O -0.383 6.383 12 C -0.576 4.576 13 H 0.088 0.912 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.734 3.266 17 H -0.210 1.210 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.044 4.044 21 C -0.071 4.071 22 C -0.121 4.121 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.124 4.124 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.743 7.119 -7.656 13.009 hybrid contribution -0.065 -0.481 1.547 1.621 sum -7.807 6.639 -6.109 11.931 Atomic orbital electron populations 1.23781 0.95721 1.01593 1.02648 1.22996 0.95917 0.98742 0.98440 1.20666 0.97131 0.95464 0.97769 1.20206 0.95193 0.91563 1.00936 0.88866 1.19853 0.81967 0.82018 0.83235 1.90606 1.61102 1.67286 1.25191 1.50220 1.44593 1.34435 1.06910 1.23439 0.90974 0.89725 0.97013 1.19805 0.83050 0.86837 0.90413 1.86072 1.52778 1.59966 1.39478 1.21469 1.51408 0.93585 0.91173 0.91166 1.25062 0.93178 0.95742 0.98988 1.69402 1.49201 1.14149 1.20958 0.86411 0.78965 0.81029 0.80245 1.21009 1.19920 1.19863 1.24338 1.02723 1.01356 0.76010 1.19428 0.98527 0.94251 0.94924 1.21126 0.96294 0.95844 0.98866 1.21098 0.99941 0.94597 0.98318 1.21124 0.99038 0.99806 0.94072 1.21078 0.97881 0.96171 0.98606 1.21064 0.99945 0.94359 0.97028 0.88627 0.88699 0.87377 0.90777 0.89490 0.91235 0.89691 0.75446 0.91667 0.90151 0.91352 0.85548 0.86229 0.86331 0.86065 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.30 14.32 29.01 0.42 -1.89 16 2 C -0.14 -1.96 9.08 -36.03 -0.33 -2.28 16 3 C -0.07 -1.02 4.63 -27.89 -0.13 -1.15 16 4 C -0.06 -0.93 2.21 -92.92 -0.21 -1.13 16 5 H 0.09 1.44 7.52 -51.93 -0.39 1.05 16 6 C 0.54 10.81 6.00 -10.98 -0.07 10.75 16 7 O -0.56 -12.49 16.37 5.56 0.09 -12.40 16 8 N -0.63 -13.30 3.61 -178.11 -0.64 -13.94 16 9 C 0.11 2.42 8.23 -2.97 -0.02 2.40 16 10 C 0.24 5.76 1.40 -90.85 -0.13 5.63 16 11 O -0.57 -14.83 13.48 -35.23 -0.48 -15.30 16 12 C -0.54 -13.40 8.61 -34.44 -0.30 -13.70 16 13 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.07 1.80 5.39 -17.82 -0.10 1.71 16 15 N -0.90 -22.52 11.20 55.43 0.62 -21.90 16 16 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 20 C 0.08 1.68 7.76 -2.84 -0.02 1.66 16 21 C -0.07 -1.12 4.77 -104.62 -0.50 -1.62 16 22 C -0.10 -1.62 8.86 -39.58 -0.35 -1.97 16 23 C -0.12 -1.67 10.05 -39.58 -0.40 -2.06 16 24 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 25 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 26 C -0.11 -1.55 9.67 -39.58 -0.38 -1.93 16 27 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.09 0.96 7.84 -52.49 -0.41 0.54 16 29 H 0.11 1.66 7.82 -52.48 -0.41 1.25 16 30 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 31 H 0.09 1.29 7.12 -51.93 -0.37 0.92 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 34 H 0.39 10.21 6.60 45.56 0.30 10.51 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.13 2.04 7.19 -52.49 -0.38 1.66 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.63 7.95 -52.48 -0.42 1.21 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -28.12 357.24 -8.75 -36.87 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -5.40 Total: 16.55 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -3.30 Total: -9.55 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.02 Total: -35.85 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.38 Total: -27.70 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.12 -8.75 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193972093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.326 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds