Wall clock time and date at job start Tue Mar 31 2020 07:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50691 * 120.00477 * 2 1 4 4 C 1.53005 * 109.47120 * 123.41719 * 3 2 1 5 5 H 1.08993 * 109.47069 * 305.67137 * 4 3 2 6 6 C 1.50702 * 109.47163 * 65.67223 * 4 3 2 7 7 O 1.21275 * 119.99779 * 34.20305 * 6 4 3 8 8 N 1.34777 * 119.99810 * 214.20713 * 6 4 3 9 9 C 1.47582 * 134.49243 * 175.05668 * 8 6 4 10 10 C 1.53942 * 86.11845 * 155.35527 * 9 8 6 11 11 O 1.42901 * 113.74307 * 269.15470 * 10 9 8 12 12 C 1.50698 * 113.73890 * 137.95105 * 10 9 8 13 13 H 1.07994 * 120.00716 * 1.92544 * 12 10 9 14 14 C 1.37888 * 119.99649 * 181.92383 * 12 10 9 15 15 N 1.31512 * 119.99793 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99851 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46960 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.46947 * 300.00256 * 16 14 12 19 19 H 1.48499 * 109.47407 * 59.99873 * 16 14 12 20 20 C 1.47811 * 134.45899 * 354.91973 * 8 6 4 21 21 C 1.50701 * 109.47051 * 185.67252 * 4 3 2 22 22 C 1.38236 * 119.99990 * 299.72513 * 21 4 3 23 23 C 1.38233 * 120.00215 * 179.78974 * 22 21 4 24 24 C 1.38236 * 119.99560 * 0.44288 * 23 22 21 25 25 C 1.38233 * 120.00304 * 359.81086 * 24 23 22 26 26 C 1.38229 * 119.99963 * 359.97438 * 25 24 23 27 27 H 1.07992 * 120.00604 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.98972 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99587 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47555 * 3.41966 * 3 2 1 31 31 H 1.09004 * 109.47373 * 243.41132 * 3 2 1 32 32 H 1.09006 * 113.76961 * 41.05306 * 9 8 6 33 33 H 1.09000 * 113.87069 * 269.67398 * 9 8 6 34 34 H 0.96696 * 114.00263 * 178.07350 * 11 10 9 35 35 H 0.97004 * 119.99467 * 179.97438 * 15 14 12 36 36 H 1.08994 * 113.76821 * 90.37797 * 20 8 6 37 37 H 1.09005 * 113.83399 * 318.92022 * 20 8 6 38 38 H 1.07999 * 120.00084 * 359.97438 * 22 21 4 39 39 H 1.07994 * 120.00503 * 180.27301 * 23 22 21 40 40 H 1.08006 * 120.00108 * 179.83136 * 24 23 22 41 41 H 1.08001 * 120.00362 * 180.02562 * 25 24 23 42 42 H 1.08007 * 120.00300 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0066 1.3493 1.2041 5 1 2.4399 1.1641 2.1164 6 6 4.0691 0.2919 1.0492 7 8 4.4892 0.0113 -0.0533 8 7 4.5524 -0.3420 2.1360 9 6 5.4957 -1.4569 2.3490 10 6 5.7402 -0.8462 3.7408 11 8 6.8145 0.0954 3.7753 12 6 5.8183 -1.8675 4.8461 13 1 5.7365 -2.9195 4.6162 14 6 5.9943 -1.4588 6.1512 15 7 6.0935 -0.1777 6.4313 16 14 6.0919 -2.7247 7.5213 17 1 6.2813 -2.0331 8.8217 18 1 4.8332 -3.5119 7.5585 19 1 7.2381 -3.6356 7.2730 20 6 4.3519 -0.1975 3.5933 21 6 3.6565 2.7067 1.2833 22 6 4.4370 3.1615 0.2369 23 6 5.0296 4.4083 0.3077 24 6 4.8492 5.1966 1.4289 25 6 4.0731 4.7397 2.4775 26 6 3.4769 3.4947 2.4048 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5398 0.9354 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3570 2.1326 0.0613 31 1 2.6436 1.3896 -0.9190 32 1 6.3679 -1.4252 1.6959 33 1 5.0206 -2.4375 2.3766 34 1 6.9524 0.5032 4.6412 35 1 6.2169 0.1099 7.3495 36 1 3.5383 -0.8065 3.9873 37 1 4.3125 0.8378 3.9320 38 1 4.5813 2.5439 -0.6372 39 1 5.6357 4.7655 -0.5116 40 1 5.3144 6.1697 1.4855 41 1 3.9318 5.3557 3.3533 42 1 2.8708 3.1374 3.2243 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193972093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:57 Heat of formation + Delta-G solvation = -27.404558 kcal Electronic energy + Delta-G solvation = -24772.326351 eV Core-core repulsion = 21297.067377 eV Total energy + Delta-G solvation = -3475.258973 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57432 -40.19917 -39.00676 -36.42499 -35.80057 -34.15018 -33.57077 -31.81308 -30.56422 -29.50620 -27.35633 -27.01548 -25.17179 -23.53073 -22.80050 -21.49453 -20.82294 -19.71123 -19.18972 -18.11709 -17.83951 -17.25022 -16.65776 -16.49915 -16.33777 -15.93812 -15.78226 -15.51733 -15.01893 -14.58139 -14.36048 -14.25104 -14.18826 -13.69690 -13.66443 -13.58295 -13.41267 -13.06216 -12.85604 -12.75323 -12.53788 -12.25803 -12.23913 -12.21945 -11.97140 -11.72475 -11.35298 -10.93130 -10.63658 -10.33906 -10.26545 -9.83246 -9.66269 -9.51196 -8.25635 -6.43059 0.35681 0.48623 1.33790 1.48088 1.50226 1.57235 1.63685 1.96200 2.41122 2.84602 2.96918 3.43543 3.59168 3.78995 3.87986 4.04889 4.14429 4.16506 4.18960 4.21368 4.29040 4.40336 4.46043 4.57399 4.62679 4.65389 4.75617 4.80541 4.88652 4.93294 5.00386 5.04948 5.07589 5.14437 5.23631 5.54607 5.59677 5.64185 5.69772 5.72556 5.82865 5.93259 6.09105 6.62021 6.84937 7.14701 7.30516 7.43948 8.80085 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.004899 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.242069 B = 5714.319579 C = 6758.276329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.175 4.175 3 C -0.064 4.064 4 C -0.048 4.048 5 H 0.100 0.900 6 C 0.537 3.463 7 O -0.589 6.589 8 N -0.634 5.634 9 C 0.109 3.891 10 C 0.222 3.778 11 O -0.587 6.587 12 C -0.558 4.558 13 H 0.071 0.929 14 C 0.035 3.965 15 N -0.914 5.914 16 Si 0.967 3.033 17 H -0.282 1.282 18 H -0.267 1.267 19 H -0.276 1.276 20 C 0.096 3.904 21 C -0.089 4.089 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.118 4.118 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.387 0.613 35 H 0.276 0.724 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 8.184 -5.581 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C -0.101 4.101 4 C -0.069 4.069 5 H 0.118 0.882 6 C 0.328 3.672 7 O -0.471 6.471 8 N -0.366 5.366 9 C -0.013 4.013 10 C 0.181 3.819 11 O -0.398 6.398 12 C -0.596 4.596 13 H 0.089 0.911 14 C -0.166 4.166 15 N -0.554 5.554 16 Si 0.792 3.208 17 H -0.207 1.207 18 H -0.192 1.192 19 H -0.202 1.202 20 C -0.027 4.027 21 C -0.089 4.089 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.136 4.136 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.184 8.106 -6.791 14.006 hybrid contribution 0.393 -0.752 1.228 1.493 sum -8.790 7.354 -5.563 12.740 Atomic orbital electron populations 1.24035 0.94776 1.03216 0.98742 1.22840 0.96773 0.97594 1.02073 1.20604 0.96920 0.96543 0.96023 1.20200 0.94124 0.90393 1.02225 0.88189 1.20614 0.82159 0.82110 0.82354 1.90580 1.62231 1.68154 1.26162 1.50269 1.44701 1.34445 1.07215 1.23439 0.91122 0.90950 0.95837 1.20075 0.83661 0.86955 0.91190 1.86059 1.54006 1.60514 1.39252 1.21683 1.52205 0.93837 0.91897 0.91088 1.25724 0.92703 0.97366 1.00768 1.69466 1.49203 1.15314 1.21441 0.85468 0.78877 0.78817 0.77631 1.20708 1.19208 1.20153 1.24096 1.01517 1.01003 0.76071 1.19488 0.99461 0.94267 0.95721 1.21162 0.97565 0.96877 0.98674 1.21400 0.99683 0.93924 0.99490 1.21522 0.98302 1.00817 0.93236 1.21459 0.97091 0.95842 0.99597 1.21283 1.00504 0.95038 0.96812 0.87326 0.86594 0.89851 0.88391 0.91129 0.92710 0.87943 0.75928 0.91451 0.89066 0.91680 0.87142 0.84221 0.83239 0.83509 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 14.32 67.78 0.97 -2.57 16 2 C -0.17 -4.70 9.08 25.64 0.23 -4.47 16 3 C -0.06 -1.76 4.63 29.85 0.14 -1.62 16 4 C -0.05 -1.55 2.21 -12.28 -0.03 -1.58 16 5 H 0.10 3.03 7.52 -2.39 -0.02 3.01 16 6 C 0.54 21.99 6.00 87.66 0.53 22.51 16 7 O -0.59 -27.22 16.37 -3.02 -0.05 -27.27 16 8 N -0.63 -27.23 3.61 -839.62 -3.03 -30.26 16 9 C 0.11 4.88 8.23 86.48 0.71 5.59 16 10 C 0.22 10.75 1.40 -10.88 -0.02 10.74 16 11 O -0.59 -31.09 13.48 -148.98 -2.01 -33.10 16 12 C -0.56 -27.78 8.61 25.60 0.22 -27.56 16 13 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 14 C 0.04 1.72 5.39 84.66 0.46 2.18 16 15 N -0.91 -45.59 11.20 21.45 0.24 -45.34 16 16 Si 0.97 38.97 29.54 68.60 2.03 40.99 16 17 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 20 C 0.10 4.10 7.76 86.44 0.67 4.77 16 21 C -0.09 -2.79 4.77 -19.86 -0.09 -2.89 16 22 C -0.12 -3.93 8.86 22.27 0.20 -3.73 16 23 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 24 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 25 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 26 C -0.12 -3.32 9.67 22.27 0.22 -3.11 16 27 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.12 1.93 7.84 -2.91 -0.02 1.91 16 29 H 0.08 2.64 7.82 -2.91 -0.02 2.62 16 30 H 0.10 2.20 7.79 -2.39 -0.02 2.18 16 31 H 0.07 2.16 7.12 -2.38 -0.02 2.14 16 32 H 0.05 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.10 4.15 8.09 -2.39 -0.02 4.13 16 34 H 0.39 20.60 6.60 -74.06 -0.49 20.11 16 35 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 36 H 0.09 3.68 8.09 -2.39 -0.02 3.66 16 37 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 38 H 0.11 3.74 7.19 -2.91 -0.02 3.72 16 39 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.13 3.33 7.95 -2.91 -0.02 3.30 16 Total: -1.00 -60.47 357.24 2.57 -57.89 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: 0.52 Total: 47.26 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.87 Total: -10.17 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.79 Total: -75.61 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -2.06 Total: -60.37 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 40.99 kcal Total: -60.47 2.57 -57.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193972093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.490 kcal (2) G-P(sol) polarization free energy of solvation -60.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds