Wall clock time and date at job start Tue Mar 31 2020 08:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99774 * 2 1 4 4 H 1.08994 * 109.47205 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47295 * 240.00041 * 3 2 1 6 6 C 1.50706 * 109.46573 * 65.00541 * 5 3 2 7 7 O 1.21274 * 120.00042 * 359.72068 * 6 5 3 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 5 3 9 9 C 1.47067 * 136.05761 * 359.63413 * 8 6 5 10 10 C 1.53757 * 87.89162 * 152.95826 * 9 8 6 11 11 O 1.42902 * 114.39454 * 272.67707 * 10 9 8 12 12 C 1.50695 * 114.26771 * 139.78859 * 10 9 8 13 13 H 1.08001 * 120.00165 * 266.47764 * 12 10 9 14 14 C 1.37880 * 119.99951 * 86.47670 * 12 10 9 15 15 N 1.31510 * 119.99815 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 119.99981 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47017 * 60.00551 * 16 14 12 18 18 H 1.48502 * 109.46959 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47443 * 300.00400 * 16 14 12 20 20 C 1.47060 * 136.05953 * 179.97438 * 8 6 5 21 21 C 1.50707 * 109.46725 * 120.00316 * 3 2 1 22 22 C 1.38234 * 119.99747 * 59.72947 * 21 3 2 23 23 C 1.38231 * 120.00135 * 179.78907 * 22 21 3 24 24 C 1.38236 * 119.99765 * 0.43404 * 23 22 21 25 25 C 1.38237 * 120.00204 * 359.82163 * 24 23 22 26 26 C 1.38232 * 120.00110 * 239.99769 * 21 3 2 27 27 H 1.07997 * 119.99968 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00063 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00063 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47486 * 305.00606 * 5 3 2 31 31 H 1.09001 * 109.47362 * 184.99884 * 5 3 2 32 32 H 1.09000 * 113.47067 * 267.69524 * 9 8 6 33 33 H 1.09009 * 113.47132 * 38.13010 * 9 8 6 34 34 H 0.96697 * 113.99805 * 273.58029 * 11 10 9 35 35 H 0.97006 * 120.00239 * 179.97438 * 15 14 12 36 36 H 1.09004 * 113.46777 * 321.86864 * 20 8 6 37 37 H 1.09001 * 113.46844 * 92.30643 * 20 8 6 38 38 H 1.08006 * 120.00182 * 359.97438 * 22 21 3 39 39 H 1.07997 * 120.00397 * 180.27888 * 23 22 21 40 40 H 1.08001 * 120.00017 * 179.83627 * 24 23 22 41 41 H 1.07995 * 120.00653 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.00099 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 6 2.0696 1.4303 -2.4765 7 8 0.8627 1.3947 -2.3634 8 7 2.6299 1.5041 -3.7001 9 6 3.9979 1.5664 -4.2363 10 6 3.4629 0.9143 -5.5219 11 8 3.4490 -0.5144 -5.4972 12 6 4.0417 1.4826 -6.7918 13 1 3.5284 2.2789 -7.3103 14 6 5.2268 0.9859 -7.2920 15 7 5.8516 0.0159 -6.6609 16 14 5.9440 1.6899 -8.8665 17 1 6.2111 3.1392 -8.6841 18 1 7.2128 0.9890 -9.1891 19 1 4.9780 1.5007 -9.9784 20 6 2.1422 1.5638 -5.0862 21 6 2.9299 1.3849 1.2305 22 6 3.9054 0.4308 1.4519 23 6 4.7030 0.5063 2.5784 24 6 4.5193 1.5309 3.4879 25 6 3.5404 2.4821 3.2692 26 6 2.7456 2.4090 2.1405 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5906 0.5106 -1.2953 31 1 3.5540 2.2880 -1.2056 32 1 4.3603 2.5837 -4.3841 33 1 4.7062 0.9409 -3.6929 34 1 4.2823 -0.9206 -5.7722 35 1 6.6851 -0.3338 -7.0129 36 1 1.2696 0.9360 -5.2668 37 1 2.0150 2.5804 -5.4582 38 1 4.0463 -0.3721 0.7433 39 1 5.4681 -0.2366 2.7491 40 1 5.1408 1.5885 4.3693 41 1 3.3971 3.2828 3.9795 42 1 1.9809 3.1522 1.9695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193977784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:06 Heat of formation + Delta-G solvation = -21.353997 kcal Electronic energy + Delta-G solvation = -23982.463472 eV Core-core repulsion = 20507.466870 eV Total energy + Delta-G solvation = -3474.996601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37656 -40.39733 -39.12447 -36.49325 -35.82869 -34.11798 -32.45563 -31.77879 -31.28778 -29.71663 -27.26865 -26.80670 -25.20382 -23.55705 -22.32794 -21.90156 -20.44090 -19.83850 -19.21680 -18.18278 -17.45148 -17.22242 -16.76511 -16.63867 -15.96890 -15.94064 -15.87351 -15.23215 -15.09366 -14.70805 -14.44973 -14.17815 -14.13949 -13.79451 -13.75069 -13.42374 -13.38654 -12.91076 -12.77078 -12.75730 -12.59328 -12.23020 -12.19625 -12.14327 -11.83404 -11.59172 -11.35071 -10.92986 -10.64332 -10.22885 -10.12517 -9.78264 -9.58823 -9.51066 -8.26836 -6.44031 0.45095 0.53726 1.48381 1.48831 1.50932 1.58187 1.71572 2.01384 2.41371 2.91504 2.95378 3.45451 3.70514 3.77923 3.98185 4.06285 4.13577 4.18459 4.23741 4.30506 4.34500 4.42264 4.51489 4.61860 4.64304 4.66115 4.73643 4.82958 4.91294 4.93505 5.00290 5.05570 5.13271 5.21120 5.25780 5.60795 5.65974 5.73161 5.73369 5.75330 5.92030 5.96214 6.15552 6.61507 6.94051 7.21244 7.30545 7.49740 8.78965 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.003351 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.666651 B = 8354.675426 C = 9089.070499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.156 4.156 3 C 0.007 3.993 4 H 0.078 0.922 5 C -0.111 4.111 6 C 0.528 3.472 7 O -0.580 6.580 8 N -0.640 5.640 9 C 0.086 3.914 10 C 0.219 3.781 11 O -0.586 6.586 12 C -0.555 4.555 13 H 0.074 0.926 14 C 0.033 3.967 15 N -0.917 5.917 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.275 1.275 20 C 0.107 3.893 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.127 4.127 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.389 0.611 35 H 0.277 0.723 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 3.483 16.777 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C -0.012 4.012 4 H 0.096 0.904 5 C -0.151 4.151 6 C 0.319 3.681 7 O -0.461 6.461 8 N -0.373 5.373 9 C -0.037 4.037 10 C 0.178 3.822 11 O -0.399 6.399 12 C -0.593 4.593 13 H 0.092 0.908 14 C -0.167 4.167 15 N -0.558 5.558 16 Si 0.795 3.205 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.201 1.201 20 C -0.016 4.016 21 C -0.081 4.081 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.145 4.145 27 H 0.120 0.880 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.764 3.422 17.257 17.610 hybrid contribution 0.826 -0.031 -1.275 1.519 sum 0.062 3.390 15.982 16.338 Atomic orbital electron populations 1.23758 0.95996 1.01611 0.99282 1.22739 0.96183 0.97214 1.01213 1.18952 0.94979 0.96987 0.90294 0.90382 1.21585 0.98020 1.05241 0.90252 1.20749 0.88527 0.75408 0.83386 1.90621 1.16040 1.53078 1.86344 1.49808 1.11596 1.71087 1.04854 1.24016 0.83430 1.01359 0.94907 1.19846 0.91012 0.79499 0.91875 1.86031 1.43051 1.20146 1.90684 1.21650 1.07519 1.20636 1.09452 0.90829 1.25759 0.96272 0.94614 1.00102 1.69316 1.18353 1.27219 1.40886 0.85416 0.77350 0.78801 0.78930 1.19122 1.20761 1.20067 1.23270 0.98454 1.00500 0.79379 1.19742 0.96600 0.96092 0.95676 1.21175 0.95862 0.98823 0.98447 1.21426 0.99507 0.99175 0.94179 1.21487 0.98491 0.94671 0.99995 1.21427 0.95606 0.99660 0.97372 1.21269 1.00384 0.98117 0.94772 0.87970 0.89194 0.87366 0.88454 0.87708 0.88939 0.91929 0.75527 0.91332 0.93195 0.88182 0.86055 0.84312 0.83823 0.83911 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 13.21 67.78 0.90 -4.02 16 2 C -0.16 -4.49 7.40 25.65 0.19 -4.30 16 3 C 0.01 0.18 1.99 -12.28 -0.02 0.16 16 4 H 0.08 2.27 7.34 -2.39 -0.02 2.25 16 5 C -0.11 -3.36 4.74 29.85 0.14 -3.22 16 6 C 0.53 20.74 7.83 87.66 0.69 21.43 16 7 O -0.58 -25.47 14.93 -3.01 -0.04 -25.51 16 8 N -0.64 -26.67 3.69 -858.32 -3.16 -29.83 16 9 C 0.09 3.60 7.86 83.26 0.65 4.25 16 10 C 0.22 10.48 1.58 -11.12 -0.02 10.46 16 11 O -0.59 -30.68 13.55 -148.98 -2.02 -32.70 16 12 C -0.55 -27.40 8.70 25.60 0.22 -27.17 16 13 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 14 C 0.03 1.60 5.39 84.66 0.46 2.06 16 15 N -0.92 -45.72 11.01 21.45 0.24 -45.49 16 16 Si 0.97 38.77 29.54 68.60 2.03 40.79 16 17 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 20 C 0.11 4.70 8.02 83.17 0.67 5.36 16 21 C -0.08 -1.93 4.77 -19.86 -0.09 -2.02 16 22 C -0.13 -2.78 8.86 22.27 0.20 -2.58 16 23 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 25 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 26 C -0.13 -2.68 9.67 22.27 0.22 -2.47 16 27 H 0.10 2.65 8.06 -2.91 -0.02 2.62 16 28 H 0.09 2.67 7.83 -2.91 -0.02 2.64 16 29 H 0.11 2.96 8.00 -2.91 -0.02 2.93 16 30 H 0.10 2.85 7.59 -2.39 -0.02 2.83 16 31 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.09 3.62 8.10 -2.39 -0.02 3.60 16 33 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 34 H 0.39 20.56 6.32 -74.06 -0.47 20.09 16 35 H 0.28 13.08 8.31 -92.70 -0.77 12.31 16 36 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.10 3.99 8.10 -2.39 -0.02 3.97 16 38 H 0.12 2.62 7.60 -2.91 -0.02 2.59 16 39 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.13 2.40 7.95 -2.91 -0.02 2.38 16 Total: -1.00 -58.78 355.80 2.44 -56.34 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: 0.54 Total: 44.41 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.86 Total: -8.02 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -2.93 Total: -75.32 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -2.06 Total: -58.21 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.79 kcal Total: -58.78 2.44 -56.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193977784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.990 kcal (2) G-P(sol) polarization free energy of solvation -58.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds