Wall clock time and date at job start Tue Mar 31 2020 08:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 N 1.46502 * 109.47276 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00268 * 269.99661 * 4 3 2 6 6 O 1.21688 * 119.99985 * 179.97438 * 5 4 3 7 7 C 1.46377 * 119.99787 * 0.02562 * 5 4 3 8 8 H 1.07993 * 120.00356 * 359.97438 * 7 5 4 9 9 C 1.40052 * 119.99672 * 179.97438 * 7 5 4 10 10 N 1.30666 * 120.00084 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99934 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47169 * 89.99796 * 11 9 7 13 13 H 1.48492 * 109.47528 * 210.00216 * 11 9 7 14 14 H 1.48506 * 109.46914 * 330.00114 * 11 9 7 15 15 C 1.46499 * 119.99792 * 89.99779 * 4 3 2 16 16 H 1.09001 * 109.47465 * 180.02562 * 15 4 3 17 17 C 1.53001 * 109.47480 * 300.00270 * 15 4 3 18 18 C 1.50705 * 109.47420 * 60.00059 * 15 4 3 19 19 C 1.33997 * 124.92353 * 139.99782 * 18 15 4 20 20 C 1.46785 * 106.18379 * 179.97438 * 19 18 15 21 21 C 1.39402 * 134.36782 * 179.97438 * 20 19 18 22 22 C 1.36738 * 119.71519 * 179.97438 * 21 20 19 23 23 C 1.38742 * 120.41803 * 0.02562 * 22 21 20 24 24 C 1.37855 * 120.68496 * 0.02562 * 23 22 21 25 25 C 1.38938 * 119.81787 * 359.97438 * 24 23 22 26 26 O 1.34451 * 124.92103 * 319.97775 * 18 15 4 27 27 H 1.08995 * 109.47605 * 60.00239 * 1 2 3 28 28 H 1.09006 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47406 * 299.99941 * 1 2 3 30 30 H 1.08995 * 109.47588 * 239.99573 * 2 1 3 31 31 H 1.09007 * 109.47361 * 119.99467 * 2 1 3 32 32 H 1.08999 * 109.47527 * 60.00050 * 3 2 1 33 33 H 1.08999 * 109.47092 * 299.99695 * 3 2 1 34 34 H 0.97007 * 120.00033 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.47258 * 59.99888 * 17 15 4 36 36 H 1.09000 * 109.47728 * 180.02562 * 17 15 4 37 37 H 1.09002 * 109.47083 * 300.00255 * 17 15 4 38 38 H 1.07996 * 126.90761 * 0.02562 * 19 18 15 39 39 H 1.08001 * 120.14630 * 0.02892 * 21 20 19 40 40 H 1.08002 * 119.79100 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.66016 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.08968 * 179.70288 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.4428 1.1680 6 8 5.3952 1.4423 1.1685 7 6 3.4459 1.4424 2.4354 8 1 2.3660 1.4424 2.4350 9 6 4.1458 1.4422 3.6485 10 7 5.4524 1.4417 3.6490 11 14 3.2112 1.4425 5.2659 12 1 2.9630 0.0425 5.6944 13 1 4.0135 2.1422 6.3011 14 1 1.9139 2.1430 5.0878 15 6 4.2379 1.4423 -1.2678 16 1 5.3095 1.4419 -1.0683 17 6 3.8686 0.1929 -2.0701 18 6 3.8742 2.6726 -2.0585 19 6 4.7370 3.4090 -2.7718 20 6 3.9516 4.4962 -3.3682 21 6 4.2530 5.5744 -4.1987 22 6 3.2594 6.4303 -4.5858 23 6 1.9549 6.2321 -4.1568 24 6 1.6381 5.1721 -3.3345 25 6 2.6328 4.2906 -2.9295 26 8 2.6367 3.1903 -2.1507 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.9372 1.4419 4.4893 35 1 2.7971 0.1929 -2.2697 36 1 4.4143 0.1925 -3.0137 37 1 4.1317 -0.6970 -1.4983 38 1 5.7971 3.2367 -2.8857 39 1 5.2668 5.7326 -4.5357 40 1 3.4914 7.2658 -5.2296 41 1 1.1797 6.9160 -4.4698 42 1 0.6204 5.0297 -3.0024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274675704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:00 Heat of formation + Delta-G solvation = -12.594925 kcal Electronic energy + Delta-G solvation = -24804.219971 eV Core-core repulsion = 21329.603191 eV Total energy + Delta-G solvation = -3474.616779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.23598 -38.42713 -37.57028 -35.06092 -33.54775 -32.55828 -32.06700 -30.45560 -30.27328 -28.35604 -26.25690 -25.46836 -23.68965 -22.51090 -21.54819 -20.96880 -20.71295 -19.13601 -17.23445 -16.71385 -16.39861 -15.88956 -15.84745 -15.41200 -14.74014 -14.24262 -14.03991 -13.85778 -13.71616 -13.21125 -13.08486 -12.79642 -12.67963 -12.42660 -12.20447 -12.02704 -11.84180 -11.69344 -11.46696 -11.37337 -11.08687 -11.01547 -10.81200 -10.69907 -10.64555 -10.31451 -10.19341 -9.89253 -9.82418 -8.88913 -8.49465 -7.94493 -7.64409 -7.39785 -6.23670 -4.68314 1.04893 1.47329 2.60981 2.93960 3.11793 3.19139 3.22132 3.81908 4.03953 4.40117 4.47055 4.63060 4.80608 4.96741 5.24480 5.33458 5.36048 5.44529 5.50902 5.52437 5.55092 5.70025 5.80496 5.85742 5.90831 5.96775 5.99256 6.05950 6.26667 6.28248 6.32303 6.34188 6.38973 6.45545 6.48471 6.57816 6.66931 6.72949 6.81745 6.95993 7.42382 7.43209 7.56641 8.07785 8.29300 8.98610 9.33256 10.51052 10.69991 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004397 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.218992 B = 6366.881356 C = 6705.273702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.125 3.875 4 N -0.633 5.633 5 C 0.557 3.443 6 O -0.577 6.577 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.088 3.912 10 N -0.765 5.765 11 Si 0.905 3.095 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.214 3.786 16 H 0.125 0.875 17 C -0.158 4.158 18 C 0.061 3.939 19 C -0.223 4.223 20 C -0.121 4.121 21 C -0.076 4.076 22 C -0.141 4.141 23 C -0.106 4.106 24 C -0.105 4.105 25 C 0.043 3.957 26 O -0.180 6.180 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 3.914 -13.525 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.001 3.999 4 N -0.369 5.369 5 C 0.364 3.636 6 O -0.460 6.460 7 C -0.573 4.573 8 H 0.092 0.908 9 C -0.132 4.132 10 N -0.394 5.394 11 Si 0.730 3.270 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.188 1.188 15 C 0.108 3.892 16 H 0.143 0.857 17 C -0.216 4.216 18 C 0.011 3.989 19 C -0.243 4.243 20 C -0.122 4.122 21 C -0.095 4.095 22 C -0.159 4.159 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.004 4.004 26 O -0.081 6.081 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.944 3.808 -13.249 15.435 hybrid contribution -0.395 0.126 0.743 0.851 sum -7.339 3.935 -12.506 15.024 Atomic orbital electron populations 1.21695 0.96551 1.00873 1.01323 1.22137 0.94762 0.99008 1.02667 1.21376 0.81262 0.95334 1.01920 1.48173 1.05207 1.79468 1.04049 1.18322 0.86956 0.76127 0.82173 1.90592 1.14019 1.55393 1.85994 1.20970 0.93746 1.53669 0.88908 0.90807 1.25734 0.94607 0.92599 1.00308 1.70014 1.07074 1.34983 1.27332 0.86404 0.80256 0.78891 0.81475 1.19675 1.20443 1.18837 1.19492 0.99787 0.86385 0.83556 0.85747 1.22301 1.01951 0.97784 0.99575 1.23483 0.81164 0.97087 0.97145 1.22187 1.00334 0.96848 1.04914 1.19983 0.93359 0.97772 1.01106 1.20256 0.99572 0.93122 0.96502 1.20694 0.92951 1.00199 1.02084 1.20832 0.96836 0.96925 0.97778 1.19919 0.97654 0.94174 1.00577 1.19797 0.95612 0.89729 0.95295 1.84120 1.31225 1.35487 1.57267 0.93382 0.93328 0.92778 0.92246 0.90991 0.90350 0.91919 0.92069 0.91990 0.92310 0.91092 0.82658 0.85856 0.85789 0.85228 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.15 0.37 -1.63 16 2 C -0.15 -2.46 5.98 -26.74 -0.16 -2.62 16 3 C 0.13 2.39 4.44 -4.04 -0.02 2.37 16 4 N -0.63 -14.10 2.39 -169.08 -0.40 -14.51 16 5 C 0.56 15.46 7.61 -12.99 -0.10 15.36 16 6 O -0.58 -18.12 14.35 5.20 0.07 -18.04 16 7 C -0.54 -14.75 8.74 -35.63 -0.31 -15.06 16 8 H 0.07 1.87 6.00 -52.49 -0.31 1.56 16 9 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 10 N -0.77 -22.56 11.83 55.55 0.66 -21.90 16 11 Si 0.91 19.92 29.56 -169.99 -5.02 14.90 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 15 C 0.21 4.15 3.09 -69.08 -0.21 3.93 16 16 H 0.12 2.66 6.87 -51.93 -0.36 2.30 16 17 C -0.16 -2.48 8.12 37.16 0.30 -2.18 16 18 C 0.06 1.11 6.01 -35.80 -0.21 0.90 16 19 C -0.22 -3.78 10.99 -37.62 -0.41 -4.19 16 20 C -0.12 -1.95 6.40 -105.16 -0.67 -2.62 16 21 C -0.08 -1.00 10.05 -39.69 -0.40 -1.40 16 22 C -0.14 -1.59 9.98 -39.94 -0.40 -1.98 16 23 C -0.11 -1.18 10.01 -39.54 -0.40 -1.57 16 24 C -0.10 -1.39 10.07 -39.46 -0.40 -1.79 16 25 C 0.04 0.71 7.42 -38.47 -0.29 0.43 16 26 O -0.18 -3.26 7.86 3.92 0.03 -3.23 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.94 5.44 -51.93 -0.28 0.65 16 31 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 32 H 0.08 1.60 6.09 -51.93 -0.32 1.29 16 33 H 0.06 1.13 5.36 -51.93 -0.28 0.85 16 34 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 35 H 0.06 0.93 6.17 -51.93 -0.32 0.61 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -33.27 344.98 -8.53 -41.80 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.65 Total: 5.54 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.40 Total: -9.76 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.25 Total: -36.41 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.11 Total: -21.28 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.27 -8.53 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274675704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.205 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds